Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR394G0003 Trochodendron aralioides HOM05D000101 ORTHO05D021212 2.1e-39 165.2 83 100.0
TAR365G0433 Trochodendron aralioides HOM05D000101 ORTHO05D000089 4.8e-28 127.5 72 84.7
TAR394G0004 Trochodendron aralioides HOM05D000101 ORTHO05D021212 3.1e-27 124.8 72 83.3
TAR365G0346 Trochodendron aralioides HOM05D000101 ORTHO05D000089 4.1e-27 124.4 72 83.3
TAR365G0739 Trochodendron aralioides HOM05D000101 ORTHO05D000089 9.1e-27 123.2 72 81.9
TAR365G0335 Trochodendron aralioides HOM05D000101 ORTHO05D000089 4.0e-22 107.8 72 73.6
TAR636G0957 Trochodendron aralioides HOM05D000101 ORTHO05D000089 9.1e-19 96.7 72 59.7
TAR365G0070 Trochodendron aralioides HOM05D000101 ORTHO05D000089 3.8e-17 91.3 73 61.6
TAR365G0707 Trochodendron aralioides HOM05D000101 ORTHO05D000089 4.7e-15 84.3 73 54.8
TAR376G0496 Trochodendron aralioides HOM05D000101 ORTHO05D000089 4.7e-15 84.3 73 56.2
TAR636G3094 Trochodendron aralioides HOM05D000101 ORTHO05D000089 8.0e-15 83.6 71 56.3
TAR365G1237 Trochodendron aralioides HOM05D000101 ORTHO05D000089 1.4e-14 82.8 73 54.8
TAR636G1033 Trochodendron aralioides HOM05D000101 ORTHO05D000089 1.2e-13 79.7 72 47.2
TAR636G2001 Trochodendron aralioides HOM05D000101 ORTHO05D000089 2.0e-13 79.0 72 51.4
TAR362G1067 Trochodendron aralioides HOM05D000101 ORTHO05D000089 1.3e-12 76.3 74 55.4
GSVIVG01017017001 Vitis vinifera HOM05D000101 ORTHO05D000089 8.3e-12 73.6 71 47.9
PSO675G3792 Papaver somniferum HOM05D000101 ORTHO05D000089 1.4e-11 72.8 75 50.7
TAR362G1071 Trochodendron aralioides HOM05D000101 ORTHO05D000089 3.1e-11 71.6 74 50.0
TAR636G2872 Trochodendron aralioides HOM05D000101 ORTHO05D000089 3.1e-11 71.6 72 45.8
MBI04_g21506_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D000089 9.1e-11 70.1 78 42.3
GSVIVG01020267001 Vitis vinifera HOM05D000101 ORTHO05D000089 1.2e-10 69.7 72 48.6
Thecc.06G028100 Theobroma cacao HOM05D000101 ORTHO05D000089 3.5e-10 68.2 63 49.2
PSO832G4434 Papaver somniferum HOM05D000101 ORTHO05D000089 5.9e-10 67.4 75 41.3
Ah.02g121690 Amaranthus hybridus HOM05D000101 ORTHO05D021212 7.7e-10 67.0 71 42.3
PSO135G0152 Papaver somniferum HOM05D000101 ORTHO05D000089 7.7e-10 67.0 75 44.0
Thecc.06G005700 Theobroma cacao HOM05D000101 ORTHO05D000089 7.7e-10 67.0 63 49.2
PSO717G0087 Papaver somniferum HOM05D000101 ORTHO05D000089 1.0e-09 66.6 75 48.0
PSO675G8281 Papaver somniferum HOM05D000101 ORTHO05D000089 1.3e-09 66.2 75 45.3
Ciclev10024873m.g Citrus clementina HOM05D000101 ORTHO05D000089 2.2e-09 65.5 57 49.1
Dinv30527 Davidia involucrata HOM05D000101 ORTHO05D000089 2.2e-09 65.5 72 47.2
PSO566G0271 Papaver somniferum HOM05D000101 ORTHO05D000089 2.9e-09 65.1 72 47.2
MBI04_g12645_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D000089 5.0e-09 64.3 72 41.7
Thecc.06G006000 Theobroma cacao HOM05D000101 ORTHO05D000089 6.5e-09 63.9 60 48.3
Thecc.09G083300 Theobroma cacao HOM05D000101 ORTHO05D002249 8.5e-09 63.5 73 45.2
PSO832G2189 Papaver somniferum HOM05D000101 ORTHO05D000089 1.1e-08 63.2 74 39.2
Thecc.06G026000 Theobroma cacao HOM05D000101 ORTHO05D000089 1.1e-08 63.2 63 46.0
Ciclev10027782m.g Citrus clementina HOM05D000101 ORTHO05D000089 2.5e-08 62.0 62 48.4
Thecc.06G028000 Theobroma cacao HOM05D000101 ORTHO05D000089 2.5e-08 62.0 57 50.9
Thecc.06G028300 Theobroma cacao HOM05D000101 ORTHO05D000089 2.5e-08 62.0 63 46.0
GSVIVG01016962001 Vitis vinifera HOM05D000101 ORTHO05D000089 2.5e-08 62.0 74 44.6
Ciclev10024882m.g Citrus clementina HOM05D000101 ORTHO05D000089 4.2e-08 61.2 71 43.7
MBI04_g34190_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D000089 5.5e-08 60.8 73 43.8
Duzib235G0825 Durio zibethinus HOM05D000101 ORTHO05D000089 7.2e-08 60.5 66 43.9
Duzib235G1014 Durio zibethinus HOM05D000101 ORTHO05D000089 7.2e-08 60.5 64 48.4
Gorai.002G018800 Gossypium raimondii HOM05D000101 ORTHO05D000089 1.2e-07 59.7 64 46.9
MBI18_g24147_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D000089 1.6e-07 59.3 72 43.1
PSO832G1686 Papaver somniferum HOM05D000101 ORTHO05D000089 1.6e-07 59.3 75 42.7
Ciclev10027596m.g Citrus clementina HOM05D000101 ORTHO05D000089 2.1e-07 58.9 62 48.4
Gorai.010G225700 Gossypium raimondii HOM05D000101 ORTHO05D000089 2.1e-07 58.9 63 44.4
CANSAT56G2886 Cannabis sativa HOM05D000101 ORTHO05D000089 3.6e-07 58.2 67 40.3
Dinv11894 Davidia involucrata HOM05D000101 ORTHO05D000089 4.7e-07 57.8 72 40.3
Gohir.A06G185942 Gossypium hirsutum HOM05D000101 ORTHO05D000089 4.7e-07 57.8 59 47.5
Ciclev10024868m.g Citrus clementina HOM05D000101 ORTHO05D000089 6.1e-07 57.4 63 39.7
Duzib268G0022 Durio zibethinus HOM05D000101 ORTHO05D000089 6.1e-07 57.4 62 45.2
Gohir.A06G185350 Gossypium hirsutum HOM05D000101 ORTHO05D000089 6.1e-07 57.4 59 45.8
MSTRG.9448 Avicennia marina HOM05D000101 ORTHO05D000089 8.0e-07 57.0 72 38.9
Dinv11884 Davidia involucrata HOM05D000101 ORTHO05D000089 8.0e-07 57.0 72 41.7
Duzib235G0358 Durio zibethinus HOM05D000101 ORTHO05D000089 8.0e-07 57.0 62 43.5
Thecc.06G071900 Theobroma cacao HOM05D000101 ORTHO05D000089 8.0e-07 57.0 62 46.8
Gohir.A01G017150 Gossypium hirsutum HOM05D000101 ORTHO05D000089 1.0e-06 56.6 64 43.8
Phvul.008G061300 Phaseolus vulgaris HOM05D000101 ORTHO05D000089 1.0e-06 56.6 71 39.4
Ah.02g121720 Amaranthus hybridus HOM05D000101 ORTHO05D000089 1.4e-06 56.2 69 37.7
Ciclev10024848m.g Citrus clementina HOM05D000101 ORTHO05D000089 1.4e-06 56.2 62 45.2
QL02p074840 Quercus lobata HOM05D000101 ORTHO05D048423 1.4e-06 56.2 64 45.3
Glyma.09G258200 Glycine max HOM05D000101 ORTHO05D000089 1.8e-06 55.8 71 38.0
MBI04_g40087_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D000089 1.8e-06 55.8 72 41.7
Ah.02g121730 Amaranthus hybridus HOM05D000101 ORTHO05D000089 2.3e-06 55.5 69 34.8
Gohir.A06G185200 Gossypium hirsutum HOM05D000101 ORTHO05D000089 2.3e-06 55.5 59 42.4
Thecc.06G023300 Theobroma cacao HOM05D000101 ORTHO05D000089 2.3e-06 55.5 61 49.2
Ciclev10027582m.g Citrus clementina HOM05D000101 ORTHO05D000089 3.0e-06 55.1 62 45.2
Dinv24079 Davidia involucrata HOM05D000101 ORTHO05D000089 3.0e-06 55.1 72 38.9
Gohir.A01G018000 Gossypium hirsutum HOM05D000101 ORTHO05D000089 3.0e-06 55.1 64 45.3
Gohir.D01G016800 Gossypium hirsutum HOM05D000101 ORTHO05D000089 3.0e-06 55.1 64 43.8
MBI04_g12648_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D000089 3.0e-06 55.1 63 44.4
Gohir.A01G017900 Gossypium hirsutum HOM05D000101 ORTHO05D000089 4.0e-06 54.7 64 43.8
Thecc.06G023700 Theobroma cacao HOM05D000101 ORTHO05D000089 4.0e-06 54.7 64 46.9
Thecc.06G026800 Theobroma cacao HOM05D000101 ORTHO05D000089 4.0e-06 54.7 56 46.4
Ciclev10024831m.g Citrus clementina HOM05D000101 ORTHO05D000089 5.2e-06 54.3 61 45.9
Ciclev10027172m.g Citrus clementina HOM05D000101 ORTHO05D000089 5.2e-06 54.3 62 43.5
Duzib168G0797 Durio zibethinus HOM05D000101 ORTHO05D000089 5.2e-06 54.3 72 41.7
Gohir.A06G186226 Gossypium hirsutum HOM05D000101 ORTHO05D000089 5.2e-06 54.3 59 44.1
Gorai.010G226300 Gossypium raimondii HOM05D000101 ORTHO05D000089 5.2e-06 54.3 59 44.1
VMungo1383G2833 Vigna mungo HOM05D000101 ORTHO05D000089 5.2e-06 54.3 71 39.4
GSVIVG01017148001 Vitis vinifera HOM05D000101 ORTHO05D000089 5.2e-06 54.3 67 43.3
TAR636G3125 Trochodendron aralioides HOM05D000101 ORTHO05D000089 6.8e-06 53.9 72 38.9
PGR044G0704 Punica granatum HOM05D000101 ORTHO05D000089 8.8e-06 53.5 74 33.8
PGR102G3083 Punica granatum HOM05D000101 ORTHO05D000089 8.8e-06 53.5 72 40.3
Thecc.06G071500 Theobroma cacao HOM05D000101 ORTHO05D000089 8.8e-06 53.5 62 43.5
TWI18G0762 Tripterygium wilfordii HOM05D000101 ORTHO05D000089 8.8e-06 53.5 62 43.5


User provided reference genes

Program Settings