Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR383G1056 Trochodendron aralioides HOM05D004705 ORTHO05D005595 0.0e+00 1333.9 746 100.0
TAR626G1984 Trochodendron aralioides HOM05D004705 ORTHO05D005595 1.6e-308 1062.4 756 75.3
Aqoxy7G01953 Aquilegia oxysepala HOM05D004705 ORTHO05D005595 9.7e-253 877.1 771 62.4
Dinv38075 Davidia involucrata HOM05D004705 ORTHO05D005595 8.5e-249 864.0 815 60.0
Nn8g39334 Nelumbo nucifera HOM05D004705 ORTHO05D005595 2.5e-248 862.4 745 62.8
QL05p026953 Quercus lobata HOM05D004705 ORTHO05D005595 6.3e-244 847.8 757 63.7
Cfa002032 Carpinus fangiana HOM05D004705 ORTHO05D005595 1.4e-243 846.7 765 64.7
Haze_16487 Corylus avellana HOM05D004705 ORTHO05D005595 1.2e-242 843.6 767 63.6
Thecc.06G077700 Theobroma cacao HOM05D004705 ORTHO05D005595 3.9e-238 828.6 763 59.9
Prupe.3G077300 Prunus persica HOM05D004705 ORTHO05D005595 6.5e-233 811.2 762 60.4
CSS0020826 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 8.5e-233 810.8 789 60.8
CSS0001459 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 7.2e-232 807.7 789 60.7
Potri.003G058600 Populus trichocarpa HOM05D004705 ORTHO05D005595 1.0e-225 787.3 764 58.8
Duzib235G0494 Durio zibethinus HOM05D004705 ORTHO05D005595 3.8e-225 785.4 760 59.6
Ciclev10024977m.g Citrus clementina HOM05D004705 ORTHO05D005595 8.5e-225 784.3 775 57.9
CiPaw.01G242500 Carya illinoinensis HOM05D004705 ORTHO05D005595 1.6e-223 780.0 775 60.0
vmacro16932 Vaccinium macrocarpon HOM05D004705 ORTHO05D005595 2.7e-223 779.2 812 55.5
Duzib160G0698 Durio zibethinus HOM05D004705 ORTHO05D005595 3.6e-223 778.9 726 59.1
RcHm_v2.0_Chr2g0137071 Rosa chinensis HOM05D004705 ORTHO05D005595 6.1e-223 778.1 760 56.6
MD17G1201400 Malus domestica HOM05D004705 ORTHO05D005595 6.8e-222 774.6 774 57.5
TWI75G0140 Tripterygium wilfordii HOM05D004705 ORTHO05D005595 1.3e-220 770.4 771 59.9
Atru.chr1.3167 Acer truncatum HOM05D004705 ORTHO05D005595 1.7e-220 770.0 752 58.1
FvH4_6g30700 Fragaria vesca HOM05D004705 ORTHO05D005595 2.2e-220 769.6 758 57.0
GSVIVG01017208001 Vitis vinifera HOM05D004705 ORTHO05D005595 3.1e-219 765.8 756 57.9
Gohir.A02G124100 Gossypium hirsutum HOM05D004705 ORTHO05D005595 1.2e-218 763.8 759 57.4
Manes.04G119400 Manihot esculenta HOM05D004705 ORTHO05D005595 2.0e-218 763.1 766 57.7
FAN09G0848 Fragaria x ananassa HOM05D004705 ORTHO05D005595 2.7e-218 762.7 760 56.2
Dinv30551 Davidia involucrata HOM05D004705 ORTHO05D005595 6.5e-217 758.1 762 57.1
FAN02G3197 Fragaria x ananassa HOM05D004705 ORTHO05D005595 1.1e-216 757.3 757 56.3
Gohir.D03G064900 Gossypium hirsutum HOM05D004705 ORTHO05D005595 1.9e-216 756.5 796 58.3
Gorai.002G057500 Gossypium raimondii HOM05D004705 ORTHO05D005595 2.5e-216 756.1 796 58.4
Potri.001G175500 Populus trichocarpa HOM05D004705 ORTHO05D005595 1.2e-215 753.8 734 58.7
PSO170G5959 Papaver somniferum HOM05D004705 ORTHO05D005595 2.7e-215 752.7 753 59.0
FAN14G4493 Fragaria x ananassa HOM05D004705 ORTHO05D005595 3.6e-215 752.3 726 57.6
RhsimUnG0009400 Rhododendron simsii HOM05D004705 ORTHO05D005595 4.7e-215 751.9 859 54.5
Cc04_g03760 Coffea canephora HOM05D004705 ORTHO05D005595 8.0e-215 751.1 831 53.2
FAN05G0816 Fragaria x ananassa HOM05D004705 ORTHO05D005595 1.8e-214 750.0 757 55.5
Lj5A66T57 Lonicera japonica HOM05D004705 ORTHO05D005595 5.2e-214 748.4 821 55.3
PSO017G1026 Papaver somniferum HOM05D004705 ORTHO05D005595 2.0e-213 746.5 754 58.8
MBI04_g43364_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 4.4e-213 745.3 852 54.2
Rhsim12G0195000 Rhododendron simsii HOM05D004705 ORTHO05D005595 9.8e-213 744.2 859 54.0
Glyma.15G011700 Glycine max HOM05D004705 ORTHO05D005595 8.6e-209 731.1 779 54.2
PGSC0003DMG400005697 Solanum tuberosum HOM05D004705 ORTHO05D005595 2.1e-207 726.5 832 51.9
ClCG07G012910 Citrullus lanatus HOM05D004705 ORTHO05D005595 6.1e-207 724.9 753 54.2
Phvul.005G173800 Phaseolus vulgaris HOM05D004705 ORTHO05D005595 1.0e-206 724.2 764 55.9
MELO3C012944.2 Cucumis melo HOM05D004705 ORTHO05D005595 4.0e-206 722.2 756 53.7
Glyma.13G362100 Glycine max HOM05D004705 ORTHO05D005595 2.0e-205 719.9 763 56.9
Lj3g0018532 Lotus japonicus HOM05D004705 ORTHO05D005595 2.6e-205 719.5 749 56.1
CANSAT56G4120 Cannabis sativa HOM05D004705 ORTHO05D005595 3.4e-205 719.2 773 57.2
CsaV3_3G026670 Cucumis sativus L. HOM05D004705 ORTHO05D005595 3.4e-205 719.2 751 53.4
Peaxi162Scf00015g00532 Petunia axillaris HOM05D004705 ORTHO05D005595 5.7e-205 718.4 848 50.4
Sopen03g038820 Solanum pennellii HOM05D004705 ORTHO05D005595 1.7e-204 716.8 832 50.8
CAN.G438.96 Capsicum annuum HOM05D004705 ORTHO05D005595 4.9e-204 715.3 823 51.0
Solyc03g119940.3 Solanum lycopersicum HOM05D004705 ORTHO05D005595 4.9e-204 715.3 832 51.2
Sed0012410 Sechium edule HOM05D004705 ORTHO05D005595 1.8e-203 713.4 753 54.4
MSTRG.20727 Avicennia marina HOM05D004705 ORTHO05D005595 1.2e-202 710.7 842 52.5
Hund00574 Selenicereus undatus HOM05D004705 ORTHO05D005595 1.3e-201 707.2 760 53.0
DCAR_025463 Daucus carota HOM05D004705 ORTHO05D005595 1.1e-200 704.1 840 51.7
ECA247G3649 Erigeron canadensis HOM05D004705 ORTHO05D005595 5.6e-200 701.8 825 51.9
HanXRQChr02g0032571 Helianthus annuus HOM05D004705 ORTHO05D005595 3.6e-199 699.1 798 52.6
Nitab4.5_0004817g0040 Nicotiana tabacum HOM05D004705 ORTHO05D005595 3.1e-198 696.0 824 50.4
EL10Ac9g21966 Beta vulgaris HOM05D004705 ORTHO05D005595 4.0e-198 695.7 807 51.2
PGR031G3493 Punica granatum HOM05D004705 ORTHO05D005595 2.6e-197 693.0 757 54.6
Oeu051920.1 Olea europaea HOM05D004705 ORTHO05D005595 1.7e-196 690.3 842 51.0
AUR62016408 Chenopodium quinoa HOM05D004705 ORTHO05D005595 1.9e-195 686.8 803 49.3
SGA_v2.0_scaffold153G36966 Striga asiatica HOM05D004705 ORTHO05D005595 3.2e-195 686.0 779 52.6
MSTRG.17159 Avicennia marina HOM05D004705 ORTHO05D005595 7.8e-194 681.4 838 51.2
Manes.11G049500 Manihot esculenta HOM05D004705 ORTHO05D005595 2.1e-191 673.3 663 57.0
Ca_01096_v3 Cicer arietinum L. HOM05D004705 ORTHO05D005595 3.6e-191 672.5 756 52.8
Nn2g11880 Nelumbo nucifera HOM05D004705 ORTHO05D005595 5.2e-190 668.7 634 59.1
Medtr2g102680 Medicago truncatula HOM05D004705 ORTHO05D005595 6.8e-190 668.3 764 51.8
THA.LOC104818041 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 2.0e-189 666.8 755 52.1
Lsat_1_v5_gn_1_33801 Lactuca sativa HOM05D004705 ORTHO05D005595 3.7e-188 662.5 806 50.0
VMungo1080G1183 Vigna mungo HOM05D004705 ORTHO05D005595 6.4e-188 661.8 761 54.7
Sp3g13840 Schrenkiella parvula HOM05D004705 ORTHO05D005595 1.6e-186 657.1 752 52.8
Sc12g0008970 Simmondsia chinensis HOM05D004705 ORTHO05D005595 3.9e-185 652.5 785 52.6
Lalb_Chr22g0351091 Lupinus albus HOM05D004705 ORTHO05D005595 3.6e-183 646.0 717 55.1
TPR.G37249 Trifolium pratense HOM05D004705 ORTHO05D005595 1.1e-182 644.4 756 50.3
Eucgr.J03029 Eucalyptus grandis HOM05D004705 ORTHO05D005595 2.3e-182 643.3 739 52.2
Lalb_Chr24g0395661 Lupinus albus HOM05D004705 ORTHO05D005595 3.1e-182 642.9 663 54.4
Aa31LG8G2800 Aethionema arabicum HOM05D004705 ORTHO05D005595 4.0e-182 642.5 761 50.6
Cpa.g.c32383.1 Carica papaya HOM05D004705 ORTHO05D005595 2.0e-181 640.2 710 54.4
COL.COLO4_12857 Corchorus olitorius HOM05D004705 ORTHO05D005595 2.0e-181 640.2 758 50.4
Sabra01G0137000 Salix brachista HOM05D004705 ORTHO05D005595 2.9e-180 636.3 718 52.6
ATR0083G057 Amborella trichopoda HOM05D004705 ORTHO05D005595 3.7e-180 636.0 837 48.7
Oeu000022.1 Olea europaea HOM05D004705 ORTHO05D005595 3.7e-180 636.0 825 49.6
AL3G28180 Arabidopsis lyrata HOM05D004705 ORTHO05D005595 6.4e-180 635.2 761 49.5
Psat5g299960 Pisum sativum HOM05D004705 ORTHO05D005595 1.6e-178 630.6 601 57.1
Carub.0003s1530 Capsella rubella HOM05D004705 ORTHO05D005595 7.8e-178 628.2 750 50.1
AUR62011594 Chenopodium quinoa HOM05D004705 ORTHO05D005595 1.3e-177 627.5 622 55.1
SalBow5G4930 Salvia bowleyana HOM05D004705 ORTHO05D005595 3.9e-177 625.9 749 49.9
CARHR090640 Cardamine hirsuta HOM05D004705 ORTHO05D005595 5.1e-177 625.5 755 50.5
C01p48810 Brassica napus HOM05D004705 ORTHO05D005595 8.6e-177 624.8 755 49.9
AT3G15550 Arabidopsis thaliana HOM05D004705 ORTHO05D005595 1.9e-176 623.6 762 48.7
arahy.Tifrunner.gnm1.ann1.1G4SNU Arachis hypogaea HOM05D004705 ORTHO05D005595 1.9e-176 623.6 751 49.5
BraA01t03898Z Brassica rapa HOM05D004705 ORTHO05D005595 1.9e-176 623.6 753 49.5
Thhalv10020202m.g Eutrema salsugineum HOM05D004705 ORTHO05D005595 5.6e-176 622.1 741 52.4
A01p38480 Brassica napus HOM05D004705 ORTHO05D005595 8.1e-175 618.2 753 49.1
A05p33830 Brassica napus HOM05D004705 ORTHO05D005595 1.4e-174 617.5 760 48.9
arahy.Tifrunner.gnm1.ann1.WXP04W Arachis hypogaea HOM05D004705 ORTHO05D005595 8.9e-174 614.8 744 49.5
arahy.Tifrunner.gnm1.ann1.HFN88V Arachis hypogaea HOM05D004705 ORTHO05D005595 3.4e-173 612.8 723 53.5
BcaC09g48528 Brassica carinata HOM05D004705 ORTHO05D005595 9.9e-173 611.3 753 49.1
C05p51460 Brassica napus HOM05D004705 ORTHO05D005595 1.3e-172 610.9 755 49.0
BolC1t04836H Brassica oleracea HOM05D004705 ORTHO05D005595 1.1e-171 607.8 755 49.4
BcaC05g28954 Brassica carinata HOM05D004705 ORTHO05D005595 3.2e-171 606.3 756 48.9
BcaB06g29595 Brassica carinata HOM05D004705 ORTHO05D005595 7.1e-171 605.1 756 48.9
BcaB04g20914 Brassica carinata HOM05D004705 ORTHO05D005595 2.1e-170 603.6 753 51.4
Os01g0176500 Oryza sativa ssp. japonica HOM05D004705 ORTHO05D005595 7.3e-168 595.1 856 44.0
BraA05t22205Z Brassica rapa HOM05D004705 ORTHO05D005595 3.6e-167 592.8 756 47.6
BolC5t33833H Brassica oleracea HOM05D004705 ORTHO05D005595 2.0e-165 587.0 754 48.4
CDE01G0719 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 1.4e-163 580.9 734 48.6
Zm00001eb122560 Zea mays HOM05D004705 ORTHO05D005595 5.6e-160 568.9 846 43.7
arahy.Tifrunner.gnm1.ann1.AD4PBH Arachis hypogaea HOM05D004705 ORTHO05D005595 2.2e-156 557.0 723 50.8
Nitab4.5_0000410g0340 Nicotiana tabacum HOM05D004705 ORTHO05D005595 9.3e-155 551.6 460 61.5
Lalb_Chr25g0279551 Lupinus albus HOM05D004705 ORTHO05D005595 6.7e-153 545.4 724 46.8
unitig_26.g8885 Utricularia gibba HOM05D004705 ORTHO05D005595 5.3e-150 535.8 639 48.8
Migut.B01589 Erythranthe guttata HOM05D004705 ORTHO05D005595 8.7e-137 491.9 767 42.4
Ah.01g021140 Amaranthus hybridus HOM05D004705 ORTHO05D005595 6.7e-129 465.7 766 42.0
THA.LOC104812485 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 1.3e-127 461.5 456 54.6
MBI01_g15493_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 1.8e-121 441.0 770 41.2
unitig_61.g26415 Utricularia gibba HOM05D004705 ORTHO05D005595 8.2e-119 432.2 512 49.2
SEGI_27484 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 9.1e-118 428.7 765 39.7
SEGI_13982 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 8.8e-113 412.1 482 47.1
AagrBONN_evm.TU.Sc2ySwM_228.3613 Anthoceros agrestis HOM05D004705 ORTHO05D005595 2.3e-97 360.9 480 43.3
CDE02G1329 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 4.3e-91 340.1 493 43.6
Pp3c13_19170 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.1e-90 337.8 488 41.6
Pp3c23_2990 Physcomitrium patens HOM05D004705 ORTHO05D005595 6.8e-89 332.8 489 41.1
Pp3c8_15560 Physcomitrium patens HOM05D004705 ORTHO05D005595 6.4e-87 326.2 489 40.5
Actinidia16007 Actinidia chinensis HOM05D004705 ORTHO05D005595 8.6e-84 315.8 313 53.7
MBI04_g47892_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 3.1e-81 307.4 521 45.9
Pp3c20_1400 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.0e-80 304.7 484 37.2
Pp3c20_1403 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.0e-80 304.7 484 37.2
Pp3c23_18290 Physcomitrium patens HOM05D004705 ORTHO05D005595 9.8e-80 302.4 442 38.9
Pp3c8_22450 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.7e-79 301.6 483 37.5
Pp3c24_17130 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.9e-78 298.1 471 40.6
Lj8C335T16 Lonicera japonica HOM05D004705 ORTHO05D005595 6.0e-61 240.0 399 43.6
SMO147G0411 Selaginella moellendorffii HOM05D004705 ORTHO05D005595 6.6e-60 236.5 196 55.6
SHI09686 Sapria himalayana HOM05D004705 ORTHO05D005595 1.3e-52 212.2 621 34.6
Actinidia16006 Actinidia chinensis HOM05D004705 ORTHO05D005595 1.5e-40 172.2 396 38.9
Actinidia08822 Actinidia chinensis HOM05D004705 ORTHO05D005595 1.1e-27 129.4 183 44.3
BcaC09g48527 Brassica carinata HOM05D004705 ORTHO05D005595 3.3e-27 127.9 92 60.9
Nitab4.5_0000410g0350 Nicotiana tabacum HOM05D004705 ORTHO05D005595 9.7e-27 126.3 416 33.2
MBI04_g47893_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 2.2e-18 98.6 208 35.6
Medtr1g107505 Medicago truncatula HOM05D004705 ORTHO05D005595 3.1e-17 94.7 71 63.4
GSVIVG01017207001 Vitis vinifera HOM05D029100 ORTHO05D016439 5.9e-16 90.5 78 56.4
unitig_26.g8886 Utricularia gibba HOM05D004705 ORTHO05D005595 4.4e-11 74.3 76 53.9
FAN08G3635 Fragaria x ananassa HOM05D004705 ORTHO05D000113 2.2e-10 72.0 66 51.5
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 2.2e-10 72.0 66 51.5
FAN21G1601 Fragaria x ananassa HOM05D000031 ORTHO05D000030 5.3e-09 67.4 53 54.7
Cpa.g.c42332 Carica papaya HOM05D004705 ORTHO05D005595 1.5e-08 65.9 53 54.7
FAN07G2703 Fragaria x ananassa HOM05D004705 ORTHO05D005595 2.0e-08 65.5 53 52.8
Medtr1g041460 Medicago truncatula HOM05D004705 ORTHO05D005595 1.7e-07 62.4 49 59.2
Cre17.g717400 Chlamydomonas reinhardtii HOM05D004705 ORTHO05D005595 1.1e-06 59.7 83 41.0
Actinidia08821 Actinidia chinensis HOM05D004705 ORTHO05D005595 2.5e-06 58.5 330 27.3


User provided reference genes

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