Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR383G0969 Trochodendron aralioides HOM05D002335 ORTHO05D006282 4.1e-177 624.8 353 100.0
Nn8g38636 Nelumbo nucifera HOM05D002335 ORTHO05D006282 3.7e-154 548.5 348 87.1
MBI19_g16223_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006282 5.4e-145 518.1 346 83.5
Aqoxy7G04129 Aquilegia oxysepala HOM05D002335 ORTHO05D006282 1.5e-142 510.0 349 82.8
PSO135G0390 Papaver somniferum HOM05D002335 ORTHO05D006282 1.6e-141 506.5 349 75.9
Hma1.2p1_0169F.1_g074510 Hydrangea macrophylla HOM05D002335 ORTHO05D006282 1.8e-140 503.1 339 79.4
PSO724G0129 Papaver somniferum HOM05D002335 ORTHO05D006282 3.1e-140 502.3 349 74.8
CiPaw.04G143000 Carya illinoinensis HOM05D002335 ORTHO05D006282 4.9e-138 495.0 359 73.5
Dinv42395 Davidia involucrata HOM05D002335 ORTHO05D006282 4.1e-137 491.9 349 80.8
Dinv25558 Davidia involucrata HOM05D002335 ORTHO05D006282 5.4e-137 491.5 339 82.6
Ciclev10008755m.g Citrus clementina HOM05D002335 ORTHO05D006282 7.1e-137 491.1 352 75.3
Gohir.D13G196375 Gossypium hirsutum HOM05D002335 ORTHO05D006282 7.1e-137 491.1 361 72.9
Gorai.013G224300 Gossypium raimondii HOM05D002335 ORTHO05D006282 1.7e-135 486.5 362 72.7
Cfa002987 Carpinus fangiana HOM05D002335 ORTHO05D006282 3.0e-135 485.7 359 73.0
GSVIVG01015081001 Vitis vinifera HOM05D002335 ORTHO05D006282 3.0e-135 485.7 345 80.0
Gohir.A13G190800 Gossypium hirsutum HOM05D002335 ORTHO05D006282 1.5e-134 483.4 361 72.0
CSS0005090 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006282 4.3e-134 481.9 350 77.7
FvH4_1g08690 Fragaria vesca HOM05D002335 ORTHO05D006282 6.2e-133 478.0 349 74.2
Solyc12g009100.2 Solanum lycopersicum HOM05D002335 ORTHO05D006282 8.1e-133 477.6 348 72.1
Sopen12g004050 Solanum pennellii HOM05D002335 ORTHO05D006282 1.1e-132 477.2 348 72.4
Duzib187G0696 Durio zibethinus HOM05D002335 ORTHO05D006282 5.2e-132 474.9 359 74.9
Thecc.09G076700 Theobroma cacao HOM05D002335 ORTHO05D006282 1.5e-131 473.4 343 77.6
ClCG03G015070 Citrullus lanatus HOM05D002335 ORTHO05D006282 2.6e-131 472.6 346 72.0
Migut.J00924 Erythranthe guttata HOM05D002335 ORTHO05D006282 3.4e-131 472.2 349 72.2
Potri.018G056500 Populus trichocarpa HOM05D002335 ORTHO05D006282 1.7e-130 469.9 345 73.3
Sed0016034 Sechium edule HOM05D002335 ORTHO05D006282 6.4e-130 468.0 346 71.1
HPP92_004364 Vanilla planifolia HOM05D002335 ORTHO05D006282 1.9e-129 466.5 343 76.4
Glyma.15G177700 Glycine max HOM05D002335 ORTHO05D006282 7.1e-129 464.5 358 70.1
MD02G1091400 Malus domestica HOM05D002335 ORTHO05D006282 7.8e-128 461.1 342 77.2
Cc06_g12190 Coffea canephora HOM05D002335 ORTHO05D006282 1.0e-127 460.7 349 74.8
ATR0598G025 Amborella trichopoda HOM05D002335 ORTHO05D006282 2.3e-127 459.5 349 69.1
FAN26G1551 Fragaria x ananassa HOM05D002335 ORTHO05D006282 1.9e-126 456.4 349 76.2
VMungo1309G0226 Vigna mungo HOM05D002335 ORTHO05D006282 2.5e-126 456.1 345 70.7
Eucgr.C03328 Eucalyptus grandis HOM05D002335 ORTHO05D006282 3.3e-126 455.7 339 73.5
FAN28G1803 Fragaria x ananassa HOM05D002335 ORTHO05D006282 3.3e-126 455.7 349 76.2
COL.COLO4_18096 Corchorus olitorius HOM05D002335 ORTHO05D006282 4.3e-126 455.3 359 74.1
Glyma.09G069700 Glycine max HOM05D002335 ORTHO05D006282 1.2e-125 453.8 345 73.6
Phvul.009G227200 Phaseolus vulgaris HOM05D002335 ORTHO05D006282 1.2e-125 453.8 359 68.5
Lj6g0009960 Lotus japonicus HOM05D002335 ORTHO05D006282 2.1e-125 453.0 360 73.3
Peaxi162Scf00928g00036 Petunia axillaris HOM05D002335 ORTHO05D006282 2.8e-125 452.6 325 74.2
Manes.16G095200 Manihot esculenta HOM05D002335 ORTHO05D006282 3.6e-125 452.2 339 70.5
RcHm_v2.0_Chr2g0095141 Rosa chinensis HOM05D002335 ORTHO05D006282 4.7e-125 451.8 343 75.8
MSTRG.19458 Avicennia marina HOM05D002335 ORTHO05D006282 3.1e-124 449.1 349 74.5
TPR.G27760 Trifolium pratense HOM05D002335 ORTHO05D006282 4.0e-124 448.7 356 69.9
Actinidia29935 Actinidia chinensis HOM05D002335 ORTHO05D006282 5.2e-124 448.4 346 76.0
CANSAT56G2952 Cannabis sativa HOM05D002335 ORTHO05D006282 8.9e-124 447.6 358 74.0
Duzib168G0796 Durio zibethinus HOM05D002335 ORTHO05D006282 4.4e-123 445.3 331 75.8
AUR62028934 Chenopodium quinoa HOM05D002335 ORTHO05D006282 1.7e-122 443.4 341 68.3
THA.LOC104815334 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 2.2e-122 443.0 344 69.5
HanXRQChr04g0126011 Helianthus annuus HOM05D002335 ORTHO05D006282 1.1e-121 440.7 340 70.3
MELO3C015522.2 Cucumis melo HOM05D002335 ORTHO05D006282 1.9e-121 439.9 346 72.5
TWI34G0307 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 1.9e-121 439.9 347 68.3
EL10Ac8g19056 Beta vulgaris HOM05D002335 ORTHO05D006282 4.2e-121 438.7 384 64.1
CsaV3_1G041060 Cucumis sativus L. HOM05D002335 ORTHO05D006282 1.2e-120 437.2 346 72.3
Carub.0003s2712 Capsella rubella HOM05D002335 ORTHO05D006282 2.7e-120 436.0 345 73.0
Aa31sc133G10 Aethionema arabicum HOM05D002335 ORTHO05D006282 4.6e-120 435.3 347 68.3
Ca_02205_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006282 7.8e-120 434.5 339 74.6
MD15G1217700 Malus domestica HOM05D002335 ORTHO05D006282 3.0e-119 432.6 318 77.7
Sp3g24570 Schrenkiella parvula HOM05D002335 ORTHO05D006282 3.0e-119 432.6 345 71.9
ECA236G4601 Erigeron canadensis HOM05D002335 ORTHO05D006282 6.6e-119 431.4 332 68.4
Sabra18G0052300 Salix brachista HOM05D002335 ORTHO05D006282 1.9e-118 429.9 424 58.5
Medtr2g041690 Medicago truncatula HOM05D002335 ORTHO05D006282 4.3e-118 428.7 345 72.8
AL3G43580 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 5.6e-118 428.3 345 72.8
BcaB06g26879 Brassica carinata HOM05D002335 ORTHO05D006282 6.2e-117 424.9 334 68.6
Zm00001eb256890 Zea mays HOM05D002335 ORTHO05D006282 1.1e-116 424.1 347 66.6
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 4.0e-116 422.2 328 68.9
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 4.0e-116 422.2 328 68.9
BcaC06g35950 Brassica carinata HOM05D002335 ORTHO05D006282 6.9e-116 421.4 334 68.0
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 9.0e-116 421.0 334 67.7
Eucgr.C03263 Eucalyptus grandis HOM05D002335 ORTHO05D006282 1.2e-115 420.6 313 73.2
Lsat_1_v5_gn_8_86481 Lactuca sativa HOM05D002335 ORTHO05D006282 2.2e-114 416.4 344 65.4
Nitab4.5_0011754g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006282 2.2e-114 416.4 348 66.7
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 8.4e-114 414.5 344 66.0
Haze_26014 Corylus avellana HOM05D002335 ORTHO05D006282 1.4e-113 413.7 397 61.2
Thhalv10014003m.g Eutrema salsugineum HOM05D002335 ORTHO05D006282 3.2e-113 412.5 345 64.9
AUR62025250 Chenopodium quinoa HOM05D002335 ORTHO05D006282 1.2e-112 410.6 326 67.2
Sp6g23900 Schrenkiella parvula HOM05D002335 ORTHO05D006282 4.6e-112 408.7 343 65.0
THA.LOC104799620 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 6.0e-112 408.3 331 67.1
AL6G32120 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 1.0e-111 407.5 346 64.7
Prupe.7G198700 Prunus persica HOM05D002335 ORTHO05D006282 1.0e-111 407.5 342 71.1
PGR044G1875 Punica granatum HOM05D002335 ORTHO05D006282 1.8e-111 406.8 301 78.7
SalBow6G4624 Salvia bowleyana HOM05D002335 ORTHO05D006282 1.8e-111 406.8 360 64.7
Atru.chr7.1708 Acer truncatum HOM05D002335 ORTHO05D006282 2.3e-111 406.4 278 75.5
SGA_v2.0_scaffold308G48076 Striga asiatica HOM05D002335 ORTHO05D006282 3.0e-111 406.0 369 66.4
AT5G20580 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 6.7e-111 404.8 346 64.5
Hund26035 Selenicereus undatus HOM05D002335 ORTHO05D006282 6.7e-111 404.8 302 70.2
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 1.9e-110 403.3 343 63.8
BraA03t10325Z Brassica rapa HOM05D002335 ORTHO05D006282 1.9e-110 403.3 343 63.8
Manes.03G040500 Manihot esculenta HOM05D002335 ORTHO05D006282 1.9e-110 403.3 340 65.3
Carub.0006s1891 Capsella rubella HOM05D002335 ORTHO05D006282 4.3e-110 402.1 346 63.6
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 1.3e-109 400.6 321 71.0
HPP92_004366 Vanilla planifolia HOM05D002335 ORTHO05D006282 1.3e-109 400.6 343 68.8
Sopen07g021360 Solanum pennellii HOM05D002335 ORTHO05D006282 4.5e-107 392.1 338 68.3
QL11p000781 Quercus lobata HOM05D002335 ORTHO05D006282 7.6e-107 391.3 381 66.1
CAN.G1661.12 Capsicum annuum HOM05D002335 ORTHO05D006282 1.3e-106 390.6 348 64.1
vmacro06343 Vaccinium macrocarpon HOM05D002335 ORTHO05D006282 3.3e-102 375.9 408 58.3
TWI63G1279 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 2.1e-101 373.2 345 66.4
CARHR103630 Cardamine hirsuta HOM05D002335 ORTHO05D006282 9.0e-100 367.9 290 75.2
Rhsim03G0227400 Rhododendron simsii HOM05D002335 ORTHO05D005129 4.5e-99 365.5 393 62.6
arahy.Tifrunner.gnm1.ann1.UHGN3W Arachis hypogaea HOM05D002335 ORTHO05D006282 5.8e-99 365.2 339 65.8
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 4.9e-98 362.1 297 66.7
SEGI_06962 Sequoiadendron giganteum HOM05D002335 ORTHO05D006282 4.9e-98 362.1 348 56.9
Psat1g134320 Pisum sativum HOM05D002335 ORTHO05D006282 2.5e-97 359.8 265 78.5
AT2G06005 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 7.1e-97 358.2 285 74.7
CARHR192220 Cardamine hirsuta HOM05D002335 ORTHO05D006282 1.2e-96 357.5 296 66.6
Nitab4.5_0000073g0170 Nicotiana tabacum HOM05D002335 ORTHO05D006282 4.6e-96 355.5 402 54.0
Cpa.g.sc28.33 Carica papaya HOM05D002335 ORTHO05D006282 1.3e-87 327.4 229 72.9
Psat3g025000 Pisum sativum HOM05D002335 ORTHO05D006282 1.8e-87 327.0 248 69.4
Aa31LG1G14100 Aethionema arabicum HOM05D002335 ORTHO05D006282 1.5e-86 323.9 440 47.5
Nitab4.5_0009436g0040 Nicotiana tabacum HOM05D002335 ORTHO05D006282 5.0e-82 308.9 409 49.9
Sc18g0002560 Simmondsia chinensis HOM05D002335 ORTHO05D006282 5.0e-82 308.9 244 75.0
FAN23G1616 Fragaria x ananassa HOM05D002335 ORTHO05D006282 9.7e-78 294.7 246 69.1
SHI23809 Sapria himalayana HOM05D002335 ORTHO05D006282 9.7e-78 294.7 235 67.2
CDE02G0868 Ceratophyllum demersum HOM05D002335 ORTHO05D006282 1.1e-76 291.2 229 68.1
Lj7C687T14 Lonicera japonica HOM05D002335 ORTHO05D006282 3.1e-76 289.7 258 65.1
Peaxi162Scf00127g01814 Petunia axillaris HOM05D002335 ORTHO05D006282 2.3e-71 273.5 240 66.7
CAN.G404.48 Capsicum annuum HOM05D002335 ORTHO05D006282 3.3e-70 269.6 302 53.6
Pp3c22_13730 Physcomitrium patens HOM05D002335 ORTHO05D006282 1.3e-69 267.7 340 48.2
Mapoly0011s0025 Marchantia polymorpha HOM05D002335 ORTHO05D006282 4.8e-69 265.8 342 46.2
DCAR_028335 Daucus carota HOM05D002335 ORTHO05D006282 5.3e-68 262.3 195 78.5
Lalb_Chr07g0181191 Lupinus albus HOM05D002335 ORTHO05D006282 4.0e-63 246.1 238 56.3
Lalb_Chr23g0276371 Lupinus albus HOM05D002335 ORTHO05D006282 5.2e-63 245.7 204 62.7
Pp3c2_6470 Physcomitrium patens HOM05D002335 ORTHO05D006282 5.7e-62 242.3 345 43.5
arahy.Tifrunner.gnm1.ann1.3UYF95 Arachis hypogaea HOM05D002335 ORTHO05D006282 7.5e-62 241.9 223 58.3
Actinidia38482 Actinidia chinensis HOM05D002335 ORTHO05D006282 4.2e-49 199.5 148 68.2
SMO358G0254 Selaginella moellendorffii HOM05D002335 ORTHO05D006282 6.8e-47 192.2 205 55.1
Lalb_Chr07g0181181 Lupinus albus HOM05D002335 ORTHO05D006282 1.2e-46 191.4 167 75.4
Lalb_Chr23g0276381 Lupinus albus HOM05D002335 ORTHO05D006282 1.3e-45 188.0 135 77.8
MD02G1091600 Malus domestica HOM05D002335 ORTHO05D006282 3.7e-45 186.4 145 64.1
Nitab4.5_0000343g0220 Nicotiana tabacum HOM05D002335 ORTHO05D006282 2.8e-40 170.2 129 66.7
Actinidia38481 Actinidia chinensis HOM05D002335 ORTHO05D006282 1.8e-36 157.5 122 86.1
AagrBONN_evm.TU.Sc2ySwM_344.5493 Anthoceros agrestis HOM05D002335 ORTHO05D006282 3.5e-35 153.3 309 34.0
Cpa.g.sc28.37 Carica papaya HOM05D002335 ORTHO05D006282 5.0e-26 122.9 105 67.6
Nitab4.5_0000343g0210 Nicotiana tabacum HOM05D002335 ORTHO05D006282 8.6e-26 122.1 98 70.4
CBR_g26318 Chara braunii HOM05D002335 ORTHO05D006282 8.1e-24 115.5 217 36.4
Solyc07g041890.1 Solanum lycopersicum HOM05D002335 ORTHO05D006282 1.2e-22 111.7 182 46.7
Medtr2g041390 Medicago truncatula HOM05D002335 ORTHO05D006282 4.9e-21 106.3 101 78.2
Oeu011491.2 Olea europaea HOM05D002335 ORTHO05D006282 8.6e-18 95.5 78 65.4
arahy.Tifrunner.gnm1.ann1.HK8DFN Arachis hypogaea HOM05D002335 ORTHO05D006282 2.8e-16 90.5 97 47.4
Ah.14g084930 Amaranthus hybridus HOM05D002335 ORTHO05D006282 3.4e-14 83.6 77 59.7
Psat6g064600 Pisum sativum HOM05D004726 ORTHO05D005986 3.8e-13 80.1 53 77.4
Oeu031390.1 Olea europaea HOM05D002335 ORTHO05D006282 5.4e-12 76.3 50 76.0
PGSC0003DMG400019032 Solanum tuberosum HOM05D002335 ORTHO05D006282 5.1e-10 69.7 48 77.1
arahy.Tifrunner.gnm1.ann1.S4WZ34 Arachis hypogaea HOM05D000237 ORTHO05D017465 9.6e-09 65.5 54 53.7
arahy.Tifrunner.gnm1.ann1.WCUD5S Arachis hypogaea HOM05D000237 ORTHO05D017465 2.8e-08 63.9 53 54.7
arahy.Tifrunner.gnm1.ann1.Y6L4BT Arachis hypogaea HOM05D000237 ORTHO05D017465 5.2e-07 59.7 69 43.5
PSO210G7126 Papaver somniferum HOM05D002335 ORTHO05D006282 2.0e-06 57.8 68 48.5
arahy.Tifrunner.gnm1.ann1.9B3XF4 Arachis hypogaea HOM05D000237 ORTHO05D017465 9.9e-06 55.5 48 54.2
Cpa.g.c47777 Carica papaya HOM05D002335 ORTHO05D006282 9.9e-06 55.5 52 59.6


User provided reference genes

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