Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR383G0873 Trochodendron aralioides HOM05D004975 ORTHO05D005963 4.7e-106 387.9 196 100.0
TAR383G0773 Trochodendron aralioides HOM05D004975 ORTHO05D005963 8.8e-97 357.1 190 94.7
TAR625G0147 Trochodendron aralioides HOM05D004975 ORTHO05D005963 4.8e-95 351.3 190 93.7
Thecc.09G007400 Theobroma cacao HOM05D004975 ORTHO05D005963 2.9e-84 315.5 190 82.1
Duzib187G1289 Durio zibethinus HOM05D004975 ORTHO05D005963 3.8e-84 315.1 190 82.6
CSS0002597 Camellia sinensis var. sinensis HOM05D004975 ORTHO05D005963 3.3e-83 312.0 191 82.7
ClCG10G000990 Citrullus lanatus HOM05D004975 ORTHO05D005963 8.0e-82 307.4 177 84.2
Cpa.g.sc6.221 Carica papaya HOM05D004975 ORTHO05D005963 1.4e-81 306.6 191 79.1
Aqoxy7G00181 Aquilegia oxysepala HOM05D004975 ORTHO05D005963 5.2e-81 304.7 190 78.9
Gohir.A07G060900 Gossypium hirsutum HOM05D004975 ORTHO05D005963 1.5e-80 303.1 197 77.7
Dinv30242 Davidia involucrata HOM05D004975 ORTHO05D005963 2.0e-80 302.8 191 80.1
PGR044G1665 Punica granatum HOM05D004975 ORTHO05D005963 2.6e-80 302.4 189 77.8
CiPaw.08G019900 Carya illinoinensis HOM05D004975 ORTHO05D005963 3.4e-80 302.0 194 78.4
MELO3C013792.2 Cucumis melo HOM05D004975 ORTHO05D005963 3.4e-80 302.0 192 77.6
Actinidia13302 Actinidia chinensis HOM05D004975 ORTHO05D005963 4.4e-80 301.6 192 79.2
Actinidia13417 Actinidia chinensis HOM05D004975 ORTHO05D005963 4.4e-80 301.6 188 80.3
Hma1.2p1_0140F.1_g063690 Hydrangea macrophylla HOM05D004975 ORTHO05D005963 4.4e-80 301.6 191 79.1
Manes.17G086700 Manihot esculenta HOM05D004975 ORTHO05D005963 4.4e-80 301.6 178 81.5
Gorai.001G069100 Gossypium raimondii HOM05D004975 ORTHO05D005963 5.8e-80 301.2 197 77.2
CiPaw.01G062200 Carya illinoinensis HOM05D004975 ORTHO05D005963 7.5e-80 300.8 194 78.4
CsaV3_3G001030 Cucumis sativus L. HOM05D004975 ORTHO05D005963 7.5e-80 300.8 192 77.1
Hund22233 Selenicereus undatus HOM05D004975 ORTHO05D005963 1.3e-79 300.1 177 84.2
arahy.Tifrunner.gnm1.ann1.1NF0KF Arachis hypogaea HOM05D004975 ORTHO05D005963 4.9e-79 298.1 179 79.9
Ciclev10009422m.g Citrus clementina HOM05D004975 ORTHO05D005963 4.9e-79 298.1 192 76.6
GSVIVG01009932001 Vitis vinifera HOM05D004975 ORTHO05D005963 6.4e-79 297.7 190 80.5
QL12p025158 Quercus lobata HOM05D004975 ORTHO05D005963 8.3e-79 297.4 190 76.3
Sc24g0001980 Simmondsia chinensis HOM05D004975 ORTHO05D005963 8.3e-79 297.4 190 78.9
Hund06848 Selenicereus undatus HOM05D004975 ORTHO05D005963 1.9e-78 296.2 177 83.6
THA.LOC104803875 Tarenaya hassleriana HOM05D004975 ORTHO05D005963 1.9e-78 296.2 177 78.5
Sed0019969 Sechium edule HOM05D004975 ORTHO05D005963 3.2e-78 295.4 177 78.0
arahy.Tifrunner.gnm1.ann1.KS8K1P Arachis hypogaea HOM05D004975 ORTHO05D005963 5.4e-78 294.7 179 78.8
Eucgr.H01931 Eucalyptus grandis HOM05D004975 ORTHO05D005963 9.2e-78 293.9 190 75.8
Gohir.D07G065600 Gossypium hirsutum HOM05D004975 ORTHO05D005963 1.2e-77 293.5 197 76.6
ATR0580G184 Amborella trichopoda HOM05D004975 ORTHO05D005963 1.6e-77 293.1 175 79.4
Duzib168G2230 Durio zibethinus HOM05D004975 ORTHO05D005963 1.6e-77 293.1 190 76.8
MBI16_g41808_MAGBIO Magnolia biondii HOM05D004975 ORTHO05D005963 1.6e-77 293.1 191 77.5
Atru.chr7.2646 Acer truncatum HOM05D004975 ORTHO05D005963 2.0e-77 292.7 180 78.9
COL.COLO4_19031 Corchorus olitorius HOM05D004975 ORTHO05D005963 2.0e-77 292.7 197 75.1
Psat6g036480 Pisum sativum HOM05D004975 ORTHO05D005963 7.8e-77 290.8 179 78.8
CARHR239350 Cardamine hirsuta HOM05D004975 ORTHO05D005963 1.0e-76 290.4 177 78.0
Cc08_g08560 Coffea canephora HOM05D004975 ORTHO05D005963 1.7e-76 289.7 191 75.4
Lj3g0002799 Lotus japonicus HOM05D004975 ORTHO05D005963 1.7e-76 289.7 198 72.7
TPR.G24523 Trifolium pratense HOM05D004975 ORTHO05D005963 1.7e-76 289.7 179 78.2
TWI63G0658 Tripterygium wilfordii HOM05D004975 ORTHO05D005963 2.3e-76 289.3 175 79.4
AL7G20600 Arabidopsis lyrata HOM05D004975 ORTHO05D005963 3.0e-76 288.9 184 75.5
Lj3g0015990 Lotus japonicus HOM05D004975 ORTHO05D005963 3.0e-76 288.9 179 77.7
TWI34G1428 Tripterygium wilfordii HOM05D004975 ORTHO05D005963 3.9e-76 288.5 190 74.7
EL10Ac2g04836 Beta vulgaris HOM05D004975 ORTHO05D005963 5.0e-76 288.1 177 79.7
arahy.Tifrunner.gnm1.ann1.GL41SS Arachis hypogaea HOM05D004975 ORTHO05D005963 6.6e-76 287.7 179 76.5
SGA_v2.0_scaffold229G43318 Striga asiatica HOM05D004975 ORTHO05D005963 6.6e-76 287.7 178 78.7
CANSAT25G3538 Cannabis sativa HOM05D004975 ORTHO05D005963 8.6e-76 287.3 175 80.0
Ah.06g191340 Amaranthus hybridus HOM05D004975 ORTHO05D005963 1.9e-75 286.2 177 77.4
CANSAT64G0033 Cannabis sativa HOM05D004975 ORTHO05D005963 4.3e-75 285.0 175 79.4
Lalb_Chr18g0045061 Lupinus albus HOM05D004975 ORTHO05D005963 4.3e-75 285.0 184 74.5
SGA_v2.0_scaffold27G11528 Striga asiatica HOM05D004975 ORTHO05D005963 7.3e-75 284.3 178 78.1
ECA248G0122 Erigeron canadensis HOM05D004975 ORTHO05D005963 9.5e-75 283.9 180 78.9
Lsat_1_v5_gn_1_49060 Lactuca sativa HOM05D004975 ORTHO05D005963 1.6e-74 283.1 178 78.7
MSTRG.11721 Avicennia marina HOM05D004975 ORTHO05D005963 4.7e-74 281.6 178 77.0
Medtr1g007480 Medicago truncatula HOM05D004975 ORTHO05D005963 4.7e-74 281.6 174 76.4
VMungo1127G2243 Vigna mungo HOM05D004975 ORTHO05D005963 6.2e-74 281.2 179 76.5
Migut.A00251 Erythranthe guttata HOM05D004975 ORTHO05D005963 8.0e-74 280.8 178 75.3
Solyc08g065760.3 Solanum lycopersicum HOM05D004975 ORTHO05D005963 1.1e-73 280.4 178 77.0
Sopen10g033590 Solanum pennellii HOM05D004975 ORTHO05D005963 1.1e-73 280.4 178 77.0
HanXRQChr11g0341541 Helianthus annuus HOM05D004975 ORTHO05D005963 1.4e-73 280.0 178 79.2
AT4G31460 Arabidopsis thaliana HOM05D004975 ORTHO05D005963 3.1e-73 278.9 174 76.4
ECA248G2823 Erigeron canadensis HOM05D004975 ORTHO05D005963 3.1e-73 278.9 180 77.8
HanXRQChr01g0029381 Helianthus annuus HOM05D004975 ORTHO05D005963 3.1e-73 278.9 178 78.7
Phvul.011G072600 Phaseolus vulgaris HOM05D004975 ORTHO05D005963 3.1e-73 278.9 179 75.4
Thhalv10026230m.g Eutrema salsugineum HOM05D004975 ORTHO05D005963 5.2e-73 278.1 169 77.5
Glyma.12G071700 Glycine max HOM05D004975 ORTHO05D005963 5.2e-73 278.1 179 74.9
Nitab4.5_0000250g0160 Nicotiana tabacum HOM05D004975 ORTHO05D005963 5.2e-73 278.1 178 75.3
Nitab4.5_0002393g0070 Nicotiana tabacum HOM05D004975 ORTHO05D005963 5.2e-73 278.1 178 75.3
PGSC0003DMG400013829 Solanum tuberosum HOM05D004975 ORTHO05D005963 5.2e-73 278.1 178 75.8
Glyma.11G153169 Glycine max HOM05D004975 ORTHO05D005963 6.8e-73 277.7 179 74.3
BraA08t33823Z Brassica rapa HOM05D004975 ORTHO05D005963 8.9e-73 277.3 169 77.5
BcaB03g12697 Brassica carinata HOM05D004975 ORTHO05D005963 1.2e-72 276.9 169 77.5
A01p06810 Brassica napus HOM05D004975 ORTHO05D005963 1.2e-72 276.9 169 76.9
A08p18600 Brassica napus HOM05D004975 ORTHO05D005963 1.2e-72 276.9 166 78.3
BraA01t00633Z Brassica rapa HOM05D004975 ORTHO05D005963 1.2e-72 276.9 169 76.9
C01p07550 Brassica napus HOM05D004975 ORTHO05D005963 1.5e-72 276.6 169 77.5
BolC1t00736H Brassica oleracea HOM05D004975 ORTHO05D005963 1.5e-72 276.6 169 77.5
Sopen08g019440 Solanum pennellii HOM05D004975 ORTHO05D005963 1.5e-72 276.6 178 75.8
Potri.018G006900 Populus trichocarpa HOM05D004975 ORTHO05D005963 2.0e-72 276.2 178 74.7
BcaNung04586 Brassica carinata HOM05D004975 ORTHO05D005963 2.6e-72 275.8 166 77.7
Sp7g29320 Schrenkiella parvula HOM05D004975 ORTHO05D005963 2.6e-72 275.8 169 76.9
BcaC09g51928 Brassica carinata HOM05D004975 ORTHO05D005963 3.4e-72 275.4 169 76.9
Peaxi162Scf00105g00510 Petunia axillaris HOM05D004975 ORTHO05D005963 3.4e-72 275.4 178 74.7
Ca_12771_v3 Cicer arietinum L. HOM05D004975 ORTHO05D005963 4.4e-72 275.0 176 75.6
Carub.0007s0909 Capsella rubella HOM05D004975 ORTHO05D005963 7.5e-72 274.2 169 75.7
DCAR_007697 Daucus carota HOM05D004975 ORTHO05D005963 7.5e-72 274.2 191 72.8
Aa31LG2G18860 Aethionema arabicum HOM05D004975 ORTHO05D005963 9.8e-72 273.9 195 69.7
unitig_46.g18530 Utricularia gibba HOM05D004975 ORTHO05D005963 3.7e-71 271.9 178 75.3
EL10Ac4g08846 Beta vulgaris HOM05D004975 ORTHO05D005963 4.9e-71 271.6 168 78.0
arahy.Tifrunner.gnm1.ann1.57HDZK Arachis hypogaea HOM05D004975 ORTHO05D005963 6.4e-71 271.2 179 74.9
BcaC01g01087 Brassica carinata HOM05D004975 ORTHO05D005963 6.4e-71 271.2 169 76.3
C03p87960 Brassica napus HOM05D004975 ORTHO05D005963 6.4e-71 271.2 169 76.3
BolC3t21107H Brassica oleracea HOM05D004975 ORTHO05D005963 6.4e-71 271.2 169 76.3
CDE02G4585 Ceratophyllum demersum HOM05D004975 ORTHO05D005963 2.4e-70 269.2 173 74.6
Os07g0544900 Oryza sativa ssp. japonica HOM05D004975 ORTHO05D005963 7.0e-70 267.7 175 75.4
CDE05G0021 Ceratophyllum demersum HOM05D004975 ORTHO05D005963 2.1e-69 266.2 181 72.9
Zm00001eb323470 Zea mays HOM05D004975 ORTHO05D005963 1.1e-67 260.4 175 72.0
Rhsim04G0150100 Rhododendron simsii HOM05D004975 ORTHO05D005963 4.3e-67 258.5 148 84.5
HPP92_011116 Vanilla planifolia HOM05D004975 ORTHO05D005963 1.6e-66 256.5 174 71.8
SHI04272 Sapria himalayana HOM05D004975 ORTHO05D005963 6.2e-66 254.6 195 64.6
RcHm_v2.0_Chr6g0305011 Rosa chinensis HOM05D004975 ORTHO05D005963 1.5e-64 250.0 179 70.9
FvH4_2g36661 Fragaria vesca HOM05D004975 ORTHO05D005963 3.4e-64 248.8 179 70.4
Zm00001eb106440 Zea mays HOM05D004975 ORTHO05D005963 1.7e-63 246.5 189 65.1
FAN20G1154 Fragaria x ananassa HOM05D007251 ORTHO05D009266 2.9e-63 245.7 179 69.3
MD08G1128100 Malus domestica HOM05D004975 ORTHO05D005963 2.3e-60 236.1 196 61.7
Sabra18G0014600 Salix brachista HOM05D004975 ORTHO05D005963 5.1e-60 235.0 264 49.2
MD15G1107600 Malus domestica HOM05D004975 ORTHO05D005963 6.6e-60 234.6 196 61.2
Haze_21744 Corylus avellana HOM05D004975 ORTHO05D005963 4.3e-59 231.9 286 47.2
Prupe.1G459900 Prunus persica HOM05D004975 ORTHO05D005963 4.3e-59 231.9 191 62.8
PSO063G2087 Papaver somniferum HOM05D004975 ORTHO05D005963 5.6e-59 231.5 181 64.1
PSO170G1562 Papaver somniferum HOM05D004975 ORTHO05D005963 5.6e-59 231.5 181 64.1
PSO063G4606 Papaver somniferum HOM05D004975 ORTHO05D005963 1.6e-58 229.9 181 63.5
SEGI_29047 Sequoiadendron giganteum HOM05D004975 ORTHO05D005963 1.7e-55 219.9 166 63.3
Manes.15G137600 Manihot esculenta HOM05D004975 ORTHO05D005963 3.8e-55 218.8 179 63.1
FvH4_7g03740 Fragaria vesca HOM05D004975 ORTHO05D005963 1.2e-53 213.8 147 73.5
FAN06G0478 Fragaria x ananassa HOM05D004975 ORTHO05D005963 1.2e-53 213.8 154 71.4
Nn2g12690 Nelumbo nucifera HOM05D004975 ORTHO05D005963 6.6e-52 208.0 113 90.3
PSO782G1312 Papaver somniferum HOM05D004975 ORTHO05D005963 8.7e-52 207.6 140 69.3
Lj7C709T7 Lonicera japonica HOM05D004975 ORTHO05D005963 1.1e-51 207.2 120 85.0
CAN.G886.9 Capsicum annuum HOM05D004975 ORTHO05D005963 1.6e-45 186.8 113 79.6
Ca_29761_v3 Cicer arietinum L. HOM05D004975 ORTHO05D005963 6.0e-45 184.9 114 78.9
AUR62027460 Chenopodium quinoa HOM05D004975 ORTHO05D005963 7.8e-45 184.5 112 80.4
Oeu031567.1 Olea europaea HOM05D004975 ORTHO05D005963 6.6e-44 181.4 118 75.4
vmacro05353 Vaccinium macrocarpon HOM05D004975 ORTHO05D005963 3.6e-42 175.6 93 90.3
Cfa013273 Carpinus fangiana HOM05D004975 ORTHO05D005963 1.8e-41 173.3 105 77.1
HPP92_011121 Vanilla planifolia HOM05D004975 ORTHO05D005963 2.4e-41 172.9 119 73.1
Pp3c2_35700 Physcomitrium patens HOM05D004975 ORTHO05D005963 1.3e-36 157.1 109 67.0
Mapoly0026s0002 Marchantia polymorpha HOM05D004975 ORTHO05D005963 3.0e-36 156.0 106 66.0
AagrBONN_evm.TU.Sc2ySwM_117.1642 Anthoceros agrestis HOM05D004975 ORTHO05D005963 5.1e-36 155.2 131 58.8
SMO367G1088 Selaginella moellendorffii HOM05D004975 ORTHO05D005963 9.6e-35 151.0 113 62.8
Solyc10g038060.2 Solanum lycopersicum HOM05D004975 ORTHO05D005963 8.1e-34 147.9 85 80.0
BcaC01g01097 Brassica carinata HOM05D004975 ORTHO05D005963 1.2e-32 144.1 93 71.0
C03p88060 Brassica napus HOM05D004975 ORTHO05D005963 1.5e-32 143.7 91 71.4
BcaNung01521 Brassica carinata HOM05D004975 ORTHO05D005963 3.7e-26 122.5 119 56.3
BcaNung04139 Brassica carinata HOM05D004975 ORTHO05D005963 3.7e-26 122.5 119 56.3
Aqoxy3G03669 Aquilegia oxysepala HOM05D004975 ORTHO05D005963 2.5e-22 109.8 61 83.6
BcaB03g12699 Brassica carinata HOM05D004975 ORTHO05D005963 4.6e-21 105.5 87 60.9
AUR62027459 Chenopodium quinoa HOM05D004975 ORTHO05D005963 1.3e-20 104.0 66 72.7
PRCOL_00000323 Prasinoderma coloniale HOM05D004975 ORTHO05D005963 3.4e-16 89.4 88 51.1
Oeu033208.1 Olea europaea HOM05D004975 ORTHO05D005963 4.5e-16 89.0 59 72.9
Sopen10g011390 Solanum pennellii HOM05D004975 ORTHO05D005963 2.1e-13 80.1 59 61.0
Cfa025056 Carpinus fangiana HOM05D004975 ORTHO05D005963 2.7e-13 79.7 78 50.0
CBR_g8145 Chara braunii HOM05D004975 ORTHO05D005963 3.0e-12 76.3 54 63.0
CiPaw.07G212300 Carya illinoinensis HOM05D004975 ORTHO05D005963 3.7e-10 69.3 50 66.0
AagrBONN_evm.TU.Sc2ySwM_368.1480 Anthoceros agrestis HOM05D001654 ORTHO05D002773 1.1e-09 67.8 61 54.1


User provided reference genes

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