Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR383G0800 Trochodendron aralioides HOM05D004757 ORTHO05D005743 1.2e-80 303.1 149 100.0
TAR626G1857 Trochodendron aralioides HOM05D004757 ORTHO05D005743 1.4e-49 199.9 126 81.0
TAR636G1688 Trochodendron aralioides HOM05D004757 ORTHO05D005743 2.1e-42 176.0 127 70.9
Nn2g12725 Nelumbo nucifera HOM05D004757 ORTHO05D005743 1.1e-35 153.7 146 61.0
Actinidia01305 Actinidia chinensis HOM05D004757 ORTHO05D005743 4.4e-32 141.7 122 61.5
Dinv19553 Davidia involucrata HOM05D004757 ORTHO05D005743 5.8e-32 141.4 134 59.7
Aqoxy7G02958 Aquilegia oxysepala HOM05D004757 ORTHO05D005743 7.6e-32 141.0 142 59.2
Atru.chr7.878 Acer truncatum HOM05D004757 ORTHO05D005743 1.3e-31 140.2 127 59.8
MELO3C017451.2 Cucumis melo HOM05D004757 ORTHO05D005743 1.7e-31 139.8 136 55.9
ClCG06G013460 Citrullus lanatus HOM05D004757 ORTHO05D005743 4.9e-31 138.3 129 58.9
CsaV3_1G031720 Cucumis sativus L. HOM05D004757 ORTHO05D005743 8.4e-31 137.5 129 58.9
PSO170G5353 Papaver somniferum HOM05D004757 ORTHO05D005743 4.1e-30 135.2 171 49.7
Haze_21940 Corylus avellana HOM05D004757 ORTHO05D005743 5.4e-30 134.8 130 58.5
PSO063G6152 Papaver somniferum HOM05D004757 ORTHO05D005743 7.1e-30 134.4 171 49.7
Actinidia19844 Actinidia chinensis HOM05D004757 ORTHO05D005743 1.2e-29 133.7 124 61.3
Cfa013398 Carpinus fangiana HOM05D004757 ORTHO05D005743 1.6e-29 133.3 127 59.1
Manes.06G022800 Manihot esculenta HOM05D004757 ORTHO05D005743 3.5e-29 132.1 119 62.2
CDE04G2108 Ceratophyllum demersum HOM05D004757 ORTHO05D005743 4.6e-29 131.7 123 59.3
Hma1.2p1_1303F.1_g274440 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 4.6e-29 131.7 144 54.2
MBI16_g31788_MAGBIO Magnolia biondii HOM05D004757 ORTHO05D005743 4.6e-29 131.7 138 53.6
Hma1.2p1_0935F.1_g238550 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 1.1e-27 127.1 126 57.9
Hma1.2p1_2317F.1_g319740 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 1.1e-27 127.1 126 57.9
Sed0015670 Sechium edule HOM05D004757 ORTHO05D005743 1.5e-27 126.7 134 53.7
C09p14310 Brassica napus HOM05D004757 ORTHO05D005743 1.9e-27 126.3 125 57.6
HanXRQChr09g0254201 Helianthus annuus HOM05D004757 ORTHO05D005743 1.9e-27 126.3 130 56.2
Potri.006G166400 Populus trichocarpa HOM05D004757 ORTHO05D005743 1.9e-27 126.3 135 54.8
GSVIVG01035530001 Vitis vinifera HOM05D004757 ORTHO05D005743 1.9e-27 126.3 130 56.2
CDE02G3269 Ceratophyllum demersum HOM05D004757 ORTHO05D005743 2.5e-27 125.9 123 57.7
TWI34G1741 Tripterygium wilfordii HOM05D004757 ORTHO05D005743 2.5e-27 125.9 128 57.8
Peaxi162Scf01558g00012 Petunia axillaris HOM05D004757 ORTHO05D005743 3.3e-27 125.6 141 53.9
THA.LOC104803943 Tarenaya hassleriana HOM05D004757 ORTHO05D005743 7.3e-27 124.4 126 55.6
CiPaw.07G193700 Carya illinoinensis HOM05D004757 ORTHO05D005743 9.6e-27 124.0 127 56.7
Manes.14G157383 Manihot esculenta HOM05D004757 ORTHO05D005743 1.2e-26 123.6 126 57.1
BcaB07g31638 Brassica carinata HOM05D004757 ORTHO05D005743 1.6e-26 123.2 119 58.0
BcaC04g22879 Brassica carinata HOM05D004757 ORTHO05D005743 1.6e-26 123.2 119 58.0
A09p12120 Brassica napus HOM05D004757 ORTHO05D005743 1.6e-26 123.2 119 58.0
BolC9t54334H Brassica oleracea HOM05D004757 ORTHO05D005743 1.6e-26 123.2 122 57.4
Nn8g40409 Nelumbo nucifera HOM05D004757 ORTHO05D005743 3.6e-26 122.1 148 50.0
AT2G18910 Arabidopsis thaliana HOM05D004757 ORTHO05D005743 6.2e-26 121.3 125 55.2
HanXRQChr09g0244371 Helianthus annuus HOM05D004757 ORTHO05D005743 6.2e-26 121.3 131 54.2
TWI63G0987 Tripterygium wilfordii HOM05D004757 ORTHO05D005743 6.2e-26 121.3 128 54.7
C03p59380 Brassica napus HOM05D004757 ORTHO05D005743 8.1e-26 120.9 126 56.3
Carub.0003s3315 Capsella rubella HOM05D004757 ORTHO05D005743 8.1e-26 120.9 126 54.8
Aa31LG8G16000 Aethionema arabicum HOM05D004757 ORTHO05D005743 1.1e-25 120.6 119 56.3
ECA234G2687 Erigeron canadensis HOM05D004757 ORTHO05D005743 1.1e-25 120.6 129 55.0
Lj4g0011233 Lotus japonicus HOM05D004757 ORTHO05D005743 1.1e-25 120.6 128 54.7
AL3G53010 Arabidopsis lyrata HOM05D004757 ORTHO05D005743 1.4e-25 120.2 118 55.9
Duzib150G0244 Durio zibethinus HOM05D004757 ORTHO05D005743 1.8e-25 119.8 136 53.7
Sed0003925 Sechium edule HOM05D004757 ORTHO05D005743 2.4e-25 119.4 129 53.5
A07p01750 Brassica napus HOM05D004757 ORTHO05D005743 4.0e-25 118.6 126 54.8
C07p03670 Brassica napus HOM05D004757 ORTHO05D005743 4.0e-25 118.6 126 55.6
BolC3t18202H Brassica oleracea HOM05D004757 ORTHO05D005743 4.0e-25 118.6 126 54.8
BolC7t40764H Brassica oleracea HOM05D004757 ORTHO05D005743 4.0e-25 118.6 126 55.6
QL02p098330 Quercus lobata HOM05D004757 ORTHO05D005743 4.0e-25 118.6 129 54.3
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 5.2e-25 118.2 126 54.8
BraA09t36856Z Brassica rapa HOM05D004757 ORTHO05D005743 5.2e-25 118.2 119 57.1
BraA06t26238Z Brassica rapa HOM05D004757 ORTHO05D005743 6.9e-25 117.9 128 55.5
CARHR109470 Cardamine hirsuta HOM05D004757 ORTHO05D005743 9.0e-25 117.5 125 53.6
CiPaw.08G035200 Carya illinoinensis HOM05D004757 ORTHO05D005743 9.0e-25 117.5 157 47.8
Lsat_1_v5_gn_7_54961 Lactuca sativa HOM05D004757 ORTHO05D005743 9.0e-25 117.5 144 51.4
Ca_21237_v3 Cicer arietinum L. HOM05D004757 ORTHO05D005743 1.2e-24 117.1 127 54.3
ATR0580G064 Amborella trichopoda HOM05D004757 ORTHO05D005743 1.5e-24 116.7 117 55.6
A06p33080 Brassica napus HOM05D004757 ORTHO05D005743 2.0e-24 116.3 126 54.8
VMungo1215G0044 Vigna mungo HOM05D004757 ORTHO05D005743 2.0e-24 116.3 126 53.2
Gohir.A08G083700 Gossypium hirsutum HOM05D004757 ORTHO05D005743 5.8e-24 114.8 126 54.0
Potri.018G090900 Populus trichocarpa HOM05D004757 ORTHO05D005743 5.8e-24 114.8 133 51.9
HPP92_015369 Vanilla planifolia HOM05D004757 ORTHO05D005743 7.6e-24 114.4 145 48.3
DCAR_020127 Daucus carota HOM05D004757 ORTHO05D005743 9.9e-24 114.0 154 48.7
Glyma.13G097500 Glycine max HOM05D004757 ORTHO05D005743 9.9e-24 114.0 126 52.4
Glyma.17G062100 Glycine max HOM05D004757 ORTHO05D005743 9.9e-24 114.0 126 54.0
Lalb_Chr13g0300141 Lupinus albus HOM05D004757 ORTHO05D005743 9.9e-24 114.0 129 52.7
Gorai.004G099000 Gossypium raimondii HOM05D004757 ORTHO05D005743 1.3e-23 113.6 132 52.3
BcaC06g36489 Brassica carinata HOM05D004757 ORTHO05D005743 1.7e-23 113.2 125 54.4
CSS0012735 Camellia sinensis var. sinensis HOM05D004757 ORTHO05D005743 1.7e-23 113.2 136 51.5
Cpa.g.sc95.44 Carica papaya HOM05D004757 ORTHO05D005743 2.2e-23 112.8 128 53.9
Phvul.003G144000 Phaseolus vulgaris HOM05D004757 ORTHO05D005743 2.2e-23 112.8 126 51.6
Duzib170G0153 Durio zibethinus HOM05D004757 ORTHO05D005743 2.9e-23 112.5 134 52.2
Nitab4.5_0010128g0010 Nicotiana tabacum HOM05D004757 ORTHO05D005743 2.9e-23 112.5 145 50.3
EL10Ac8g18296 Beta vulgaris HOM05D004757 ORTHO05D005743 3.8e-23 112.1 122 50.8
Gohir.D08G093400 Gossypium hirsutum HOM05D004757 ORTHO05D005743 3.8e-23 112.1 126 53.2
Lsat_1_v5_gn_8_68041 Lactuca sativa HOM05D004757 ORTHO05D005743 3.8e-23 112.1 131 49.6
Medtr4g127810 Medicago truncatula HOM05D004757 ORTHO05D005743 3.8e-23 112.1 128 53.1
Oeu025209.1 Olea europaea HOM05D004757 ORTHO05D005743 3.8e-23 112.1 144 47.9
Eucgr.C00145 Eucalyptus grandis HOM05D004757 ORTHO05D005743 4.9e-23 111.7 128 51.6
Oeu025694.3 Olea europaea HOM05D004757 ORTHO05D005743 4.9e-23 111.7 152 44.7
Solyc07g006960.3 Solanum lycopersicum HOM05D004757 ORTHO05D005743 4.9e-23 111.7 129 53.5
Duzib168G0914 Durio zibethinus HOM05D004757 ORTHO05D005743 6.4e-23 111.3 132 52.3
BcaB03g16684 Brassica carinata HOM05D004757 ORTHO05D005743 8.4e-23 110.9 126 52.4
Prupe.1G082700 Prunus persica HOM05D004757 ORTHO05D005743 8.4e-23 110.9 126 49.2
Rhsim01G0003200 Rhododendron simsii HOM05D004757 ORTHO05D005743 8.4e-23 110.9 137 50.4
ATR0030G045 Amborella trichopoda HOM05D004757 ORTHO05D005743 1.9e-22 109.8 121 54.5
PGSC0003DMG400018757 Solanum tuberosum HOM05D004757 ORTHO05D005743 4.2e-22 108.6 138 52.2
Sabra06G0128000 Salix brachista HOM05D004757 ORTHO05D005743 5.4e-22 108.2 179 43.0
MD16G1255800 Malus domestica HOM05D004757 ORTHO05D005743 7.1e-22 107.8 134 48.5
TPR.G5446 Trifolium pratense HOM05D004757 ORTHO05D005743 7.1e-22 107.8 135 52.6
PGR044G0017 Punica granatum HOM05D004757 ORTHO05D005743 9.3e-22 107.5 124 50.0
SGA_v2.0_scaffold66G22433 Striga asiatica HOM05D004757 ORTHO05D005743 1.2e-21 107.1 121 53.7
HanXRQChr05g0142021 Helianthus annuus HOM05D004757 ORTHO05D005743 1.6e-21 106.7 128 47.7
Sp3g32380 Schrenkiella parvula HOM05D004757 ORTHO05D005743 2.1e-21 106.3 126 51.6
unitig_21.g20652 Utricularia gibba HOM05D004757 ORTHO05D005743 2.1e-21 106.3 128 47.7
Ah.14g083740 Amaranthus hybridus HOM05D004757 ORTHO05D005743 3.5e-21 105.5 130 49.2
Lalb_Chr12g0199461 Lupinus albus HOM05D004757 ORTHO05D005743 3.5e-21 105.5 122 50.0
ECA236G5014 Erigeron canadensis HOM05D004757 ORTHO05D005743 4.6e-21 105.1 118 49.2
Thecc.09G175100 Theobroma cacao HOM05D004757 ORTHO05D005743 4.6e-21 105.1 128 49.2
ECA240G0762 Erigeron canadensis HOM05D004757 ORTHO05D005743 6.0e-21 104.8 118 50.8
Migut.J01503 Erythranthe guttata HOM05D004757 ORTHO05D005743 6.0e-21 104.8 131 49.6
CSS0015413 Camellia sinensis var. sinensis HOM05D004757 ORTHO05D005743 1.0e-20 104.0 123 50.4
MSTRG.19719 Avicennia marina HOM05D004757 ORTHO05D005743 1.3e-20 103.6 133 48.1
Hund09034 Selenicereus undatus HOM05D004757 ORTHO05D005743 1.3e-20 103.6 130 50.0
Peaxi162Scf00200g00183 Petunia axillaris HOM05D004757 ORTHO05D005743 1.7e-20 103.2 111 53.2
Migut.K00229 Erythranthe guttata HOM05D004757 ORTHO05D005743 2.3e-20 102.8 120 50.8
Ciclev10009829m.g Citrus clementina HOM05D004757 ORTHO05D005743 3.0e-20 102.4 151 46.4
THA.LOC104803488 Tarenaya hassleriana HOM05D004757 ORTHO05D005743 8.7e-20 100.9 126 47.6
Eucgr.L02640 Eucalyptus grandis HOM05D004757 ORTHO05D005743 1.1e-19 100.5 143 43.4
Gorai.004G027500 Gossypium raimondii HOM05D004757 ORTHO05D005743 1.1e-19 100.5 138 47.8
Sc08g0005260 Simmondsia chinensis HOM05D004757 ORTHO05D005743 1.1e-19 100.5 123 51.2
Sc14g0001290 Simmondsia chinensis HOM05D004757 ORTHO05D005743 1.1e-19 100.5 119 50.4
FAN17G1906 Fragaria x ananassa HOM05D004757 ORTHO05D005743 1.5e-19 100.1 127 48.8
Lsat_1_v5_gn_5_85101 Lactuca sativa HOM05D004757 ORTHO05D005743 1.5e-19 100.1 130 47.7
FAN12G2780 Fragaria x ananassa HOM05D004757 ORTHO05D005743 2.5e-19 99.4 148 43.9
Psat4g012760 Pisum sativum HOM05D004757 ORTHO05D005743 2.5e-19 99.4 130 50.0
Ah.09g229970 Amaranthus hybridus HOM05D004757 ORTHO05D005743 4.3e-19 98.6 153 41.8
Gohir.A08G019400 Gossypium hirsutum HOM05D004757 ORTHO05D005743 4.3e-19 98.6 136 47.8
RcHm_v2.0_Chr4g0401201 Rosa chinensis HOM05D004757 ORTHO05D005743 4.3e-19 98.6 127 46.5
Thhalv10022848m.g Eutrema salsugineum HOM05D004757 ORTHO05D005743 5.6e-19 98.2 126 49.2
FvH4_4g07900 Fragaria vesca HOM05D004757 ORTHO05D005743 5.6e-19 98.2 132 47.0
SalBow6G1691 Salvia bowleyana HOM05D004757 ORTHO05D005743 5.6e-19 98.2 137 47.4
Cc06_g12990 Coffea canephora HOM05D004757 ORTHO05D005743 7.3e-19 97.8 150 44.7
Sopen07g003050 Solanum pennellii HOM05D004757 ORTHO05D005743 7.3e-19 97.8 127 50.4
FAN07G0988 Fragaria x ananassa HOM05D004757 ORTHO05D005743 9.6e-19 97.4 148 43.2
FAN22G2108 Fragaria x ananassa HOM05D004757 ORTHO05D005743 9.6e-19 97.4 148 43.2
Sabra18G0078100 Salix brachista HOM05D004757 ORTHO05D005743 1.6e-18 96.7 157 43.3
vmacro13132 Vaccinium macrocarpon HOM05D004757 ORTHO05D005743 3.6e-18 95.5 141 46.8
Gohir.D08G030000 Gossypium hirsutum HOM05D004757 ORTHO05D005743 4.8e-18 95.1 138 46.4
HanXRQChr10g0308501 Helianthus annuus HOM05D004757 ORTHO05D005743 6.2e-18 94.7 127 45.7
PGR142G2781 Punica granatum HOM05D004757 ORTHO05D005743 8.1e-18 94.4 128 46.9
CAN.G1464.4 Capsicum annuum HOM05D004757 ORTHO05D005743 1.8e-17 93.2 122 47.5
MD13G1249500 Malus domestica HOM05D004757 ORTHO05D005743 6.9e-17 91.3 139 43.2
Peaxi162Scf00200g01819 Petunia axillaris HOM05D004757 ORTHO05D005743 6.9e-17 91.3 115 46.1
MSTRG.6239 Avicennia marina HOM05D004757 ORTHO05D005743 2.0e-16 89.7 147 43.5
AUR62043442 Chenopodium quinoa HOM05D000216 ORTHO05D003518 7.6e-16 87.8 110 44.5
Zm00001eb236700 Zea mays HOM05D004757 ORTHO05D005743 7.6e-16 87.8 161 36.6
Os02g0461900 Oryza sativa ssp. japonica HOM05D004757 ORTHO05D005743 1.3e-15 87.0 99 46.5
Zm00001eb180540 Zea mays HOM05D004757 ORTHO05D005743 1.1e-14 84.0 87 49.4
Dinv41223 Davidia involucrata HOM05D004757 ORTHO05D005743 3.2e-14 82.4 113 49.6
CANSAT11G1025 Cannabis sativa HOM05D004757 ORTHO05D005743 7.9e-13 77.8 132 40.9
Zm00001eb420280 Zea mays HOM05D004757 ORTHO05D005743 7.9e-13 77.8 155 36.8
Zm00001eb087060 Zea mays HOM05D004757 ORTHO05D005743 1.1e-11 73.9 74 50.0
Peaxi162Scf00200g00182 Petunia axillaris HOM05D004757 ORTHO05D005743 1.9e-11 73.2 110 46.4
Peaxi162Scf00627g00011 Petunia axillaris HOM05D004757 ORTHO05D005743 4.8e-10 68.6 117 38.5
AUR62021312 Chenopodium quinoa HOM05D004757 ORTHO05D005743 2.9e-07 59.3 97 42.3
AUR62033229 Chenopodium quinoa HOM05D004757 ORTHO05D005743 3.8e-07 58.9 83 47.0


User provided reference genes

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