Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR383G0769 Trochodendron aralioides HOM05D001798 ORTHO05D005040 1.1e-63 246.5 124 100.0
Dinv41255 Davidia involucrata HOM05D001798 ORTHO05D004054 2.6e-38 162.2 122 68.9
Hma1.2p1_1646F.1_g295510 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 1.5e-33 146.4 121 63.6
Hma1.2p1_2478F.1_g322950 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 2.0e-33 146.0 121 63.6
CiPaw.07G191500 Carya illinoinensis HOM05D001798 ORTHO05D005040 3.3e-33 145.2 127 61.4
CSS0007301 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 5.7e-33 144.4 133 63.2
Nn2g12701 Nelumbo nucifera HOM05D001798 ORTHO05D005040 5.7e-33 144.4 125 62.4
Duzib170G0014 Durio zibethinus HOM05D001798 ORTHO05D005040 2.4e-31 139.0 117 61.5
Thecc.09G171700 Theobroma cacao HOM05D001798 ORTHO05D005040 2.6e-30 135.6 123 60.2
COL.COLO4_36848 Corchorus olitorius HOM05D001798 ORTHO05D005040 3.5e-30 135.2 117 60.7
Cfa016621 Carpinus fangiana HOM05D001798 ORTHO05D005040 2.2e-29 132.5 124 58.1
Prupe.1G087800 Prunus persica HOM05D001798 ORTHO05D005040 2.2e-29 132.5 126 58.7
Atru.chr7.661 Acer truncatum HOM05D001798 ORTHO05D005040 2.9e-29 132.1 123 56.9
Aqoxy7G03082 Aquilegia oxysepala HOM05D001798 ORTHO05D005040 5.0e-29 131.3 134 56.0
SGA_v2.0_scaffold12G06063 Striga asiatica HOM05D001798 ORTHO05D005040 5.0e-29 131.3 116 60.3
MSTRG.26226 Avicennia marina HOM05D001798 ORTHO05D005040 1.1e-28 130.2 125 56.8
Duzib150G1419 Durio zibethinus HOM05D001798 ORTHO05D005040 1.1e-28 130.2 123 56.9
QL12p025154 Quercus lobata HOM05D001798 ORTHO05D005040 1.1e-28 130.2 122 57.4
SGA_v2.0_scaffold301G47805 Striga asiatica HOM05D000485 ORTHO05D005040 1.1e-28 130.2 121 56.2
Haze_19626 Corylus avellana HOM05D001798 ORTHO05D005040 1.9e-28 129.4 124 55.6
CSS0005198 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 4.2e-28 128.3 127 57.5
CSS0011185 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 4.2e-28 128.3 127 57.5
CsaV3_1G031530 Cucumis sativus L. HOM05D001798 ORTHO05D005040 4.2e-28 128.3 116 61.2
SalBow6G3226 Salvia bowleyana HOM05D001798 ORTHO05D005040 5.5e-28 127.9 125 56.0
CSS0022506 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 9.4e-28 127.1 127 57.5
ClCG06G013270 Citrullus lanatus HOM05D001798 ORTHO05D005040 9.4e-28 127.1 119 59.7
Manes.03G004000 Manihot esculenta HOM05D001798 ORTHO05D005040 9.4e-28 127.1 110 61.8
QL02p097578 Quercus lobata HOM05D001798 ORTHO05D005040 9.4e-28 127.1 126 57.9
SalBow6G3242 Salvia bowleyana HOM05D001798 ORTHO05D005040 9.4e-28 127.1 124 56.5
Cpa.g.sc95.60 Carica papaya HOM05D001798 ORTHO05D005040 1.2e-27 126.7 119 63.0
CSS0019887 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.6e-27 126.3 127 57.5
Gohir.D08G094900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.6e-27 126.3 120 56.7
MD12G1161200 Malus domestica HOM05D001798 ORTHO05D005040 1.6e-27 126.3 126 57.9
MSTRG.19701 Avicennia marina HOM05D001798 ORTHO05D005040 6.1e-27 124.4 119 55.5
MBI16_g35924_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 6.1e-27 124.4 125 56.8
SGA_v2.0_scaffold69G23263 Striga asiatica HOM05D001798 ORTHO05D005040 6.1e-27 124.4 124 53.2
FAN22G0641 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.0e-26 123.6 126 54.8
Gorai.004G100700 Gossypium raimondii HOM05D001798 ORTHO05D005040 1.0e-26 123.6 120 55.8
Manes.16G135500 Manihot esculenta HOM05D001798 ORTHO05D005040 1.0e-26 123.6 113 59.3
Solyc11g008600.1 Solanum lycopersicum HOM05D001798 ORTHO05D005040 1.4e-26 123.2 136 52.9
Sabra18G0080900 Salix brachista HOM05D001798 ORTHO05D005040 1.8e-26 122.9 118 56.8
Sopen11g004390 Solanum pennellii HOM05D001798 ORTHO05D005040 2.3e-26 122.5 135 52.6
MELO3C017469.2 Cucumis melo HOM05D001798 ORTHO05D005040 3.0e-26 122.1 116 60.3
FvH4_3g45900 Fragaria vesca HOM05D001798 ORTHO05D005040 3.0e-26 122.1 124 55.6
QL02p097572 Quercus lobata HOM05D001798 ORTHO05D005040 4.0e-26 121.7 120 57.5
Gohir.A08G085900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 5.2e-26 121.3 120 55.0
MBI16_g35923_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 5.2e-26 121.3 125 55.2
Sed0020469 Sechium edule HOM05D001798 ORTHO05D005040 5.2e-26 121.3 115 57.4
PGR142G4397 Punica granatum HOM05D001798 ORTHO05D005040 6.7e-26 120.9 127 55.1
Potri.018G094100 Populus trichocarpa HOM05D001798 ORTHO05D005040 8.8e-26 120.6 117 56.4
Eucgr.C02286 Eucalyptus grandis HOM05D001798 ORTHO05D005040 1.1e-25 120.2 120 54.2
Migut.J01450 Erythranthe guttata HOM05D001798 ORTHO05D005040 2.0e-25 119.4 126 50.8
Migut.K00248 Erythranthe guttata HOM05D001798 ORTHO05D005040 3.3e-25 118.6 133 51.1
FvH4_4g09360 Fragaria vesca HOM05D001798 ORTHO05D005040 3.3e-25 118.6 124 54.8
MD13G1257600 Malus domestica HOM05D001798 ORTHO05D005040 3.3e-25 118.6 126 55.6
Eucgr.C02285 Eucalyptus grandis HOM05D001798 ORTHO05D005040 4.4e-25 118.2 129 50.4
CiPaw.08G019800 Carya illinoinensis HOM05D001798 ORTHO05D005040 5.7e-25 117.9 122 53.3
AT5G57510 Arabidopsis thaliana HOM05D001798 ORTHO05D005040 7.5e-25 117.5 123 57.7
Eucgr.C00167 Eucalyptus grandis HOM05D001798 ORTHO05D005040 7.5e-25 117.5 125 54.4
PGSC0003DMG400016261 Solanum tuberosum HOM05D001798 ORTHO05D005040 7.5e-25 117.5 140 50.0
TWI34G0376 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 9.7e-25 117.1 119 55.5
Gohir.D06G107900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 2.2e-24 115.9 123 50.4
Ciclev10009891m.g Citrus clementina HOM05D001798 ORTHO05D005040 2.8e-24 115.5 126 52.4
RcHm_v2.0_Chr4g0402701 Rosa chinensis HOM05D001798 ORTHO05D005040 4.8e-24 114.8 131 53.4
Thhalv10015454m.g Eutrema salsugineum HOM05D001798 ORTHO05D005040 6.3e-24 114.4 124 56.5
TWI34G1338 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 8.2e-24 114.0 119 54.6
Duzib187G0913 Durio zibethinus HOM05D001798 ORTHO05D005040 1.8e-23 112.8 120 52.5
BcaB08g36104 Brassica carinata HOM05D001798 ORTHO05D005040 3.1e-23 112.1 123 55.3
THA.LOC104811795 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 5.3e-23 111.3 127 55.9
AL8G33450 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 7.0e-23 110.9 123 56.9
AL8G33510 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 7.0e-23 110.9 123 56.9
Sp6g19210 Schrenkiella parvula HOM05D001798 ORTHO05D005040 7.0e-23 110.9 124 54.8
Manes.14G151300 Manihot esculenta HOM05D001798 ORTHO05D005040 9.1e-23 110.5 122 53.3
Gorai.010G122600 Gossypium raimondii HOM05D001798 ORTHO05D005040 1.6e-22 109.8 126 47.6
RcHm_v2.0_Chr4g0402691 Rosa chinensis HOM05D001798 ORTHO05D005040 2.7e-22 109.0 126 54.0
MBI16_g35927_MAGBIO Magnolia biondii HOM05D000772 ORTHO05D005040 7.7e-22 107.5 108 55.6
Duzib168G0008 Durio zibethinus HOM05D001798 ORTHO05D005040 1.0e-21 107.1 112 53.6
Gohir.A06G105500 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.0e-21 107.1 125 47.2
CAN.G321.14 Capsicum annuum HOM05D001798 ORTHO05D005040 1.7e-21 106.3 147 44.2
Potri.006G273500 Populus trichocarpa HOM05D001798 ORTHO05D005040 2.2e-21 105.9 123 52.0
Potri.006G273566 Populus trichocarpa HOM05D001798 ORTHO05D005040 2.2e-21 105.9 123 52.0
Carub.0008s1801 Capsella rubella HOM05D001798 ORTHO05D005040 5.0e-21 104.8 123 52.8
Haze_21741 Corylus avellana HOM05D001798 ORTHO05D005040 6.5e-21 104.4 123 52.0
Haze_21742 Corylus avellana HOM05D001798 ORTHO05D005040 6.5e-21 104.4 123 52.0
Peaxi162Scf00296g00124 Petunia axillaris HOM05D001798 ORTHO05D005040 6.5e-21 104.4 141 47.5
THA.LOC104817796 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 6.5e-21 104.4 112 56.2
C02p14230 Brassica napus HOM05D001798 ORTHO05D005040 1.1e-20 103.6 124 54.8
BcaC03g14152 Brassica carinata HOM05D001798 ORTHO05D005040 1.5e-20 103.2 124 54.8
Haze_21745 Corylus avellana HOM05D001798 ORTHO05D005040 1.9e-20 102.8 124 50.8
CARHR271290 Cardamine hirsuta HOM05D001798 ORTHO05D005040 2.5e-20 102.4 124 54.0
BolC2t07547H Brassica oleracea HOM05D001798 ORTHO05D005040 3.2e-20 102.1 110 58.2
SalBow1G2776 Salvia bowleyana HOM05D001798 ORTHO05D005040 3.2e-20 102.1 107 51.4
Aa31LG3G13380 Aethionema arabicum HOM05D001798 ORTHO05D005040 4.2e-20 101.7 114 57.0
COL.COLO4_19032 Corchorus olitorius HOM05D001798 ORTHO05D005040 5.5e-20 101.3 114 49.1
Sabra06G0212200 Salix brachista HOM05D001798 ORTHO05D005040 5.5e-20 101.3 116 51.7
Ciclev10010207m.g Citrus clementina HOM05D001798 ORTHO05D005040 1.2e-19 100.1 116 51.7
Glyma.13G095700 Glycine max HOM05D001798 ORTHO05D005040 1.6e-19 99.8 117 51.3
A02p08470 Brassica napus HOM05D001798 ORTHO05D005040 2.1e-19 99.4 124 53.2
BraA02t05918Z Brassica rapa HOM05D001798 ORTHO05D005040 2.1e-19 99.4 124 53.2
Haze_21738 Corylus avellana HOM05D001798 ORTHO05D005040 2.7e-19 99.0 107 55.1
Cfa013270 Carpinus fangiana HOM05D001798 ORTHO05D005040 3.6e-19 98.6 107 54.2
Rhsim01G0006100 Rhododendron simsii HOM05D001798 ORTHO05D005040 3.6e-19 98.6 89 59.6
FvH4_2g36750 Fragaria vesca HOM05D001798 ORTHO05D005040 4.7e-19 98.2 121 46.3
FAN27G0855 Fragaria x ananassa HOM05D001798 ORTHO05D005040 4.7e-19 98.2 121 46.3
Sabra06G0211900 Salix brachista HOM05D001798 ORTHO05D005040 4.7e-19 98.2 130 45.4
VMungo1215G0796 Vigna mungo HOM05D001798 ORTHO05D005040 6.1e-19 97.8 121 50.4
Cfa013271 Carpinus fangiana HOM05D001798 ORTHO05D005040 8.0e-19 97.4 109 56.0
Lalb_Chr12g0199341 Lupinus albus HOM05D001798 ORTHO05D005040 8.0e-19 97.4 124 47.6
RcHm_v2.0_Chr6g0305001 Rosa chinensis HOM05D001798 ORTHO05D005040 8.0e-19 97.4 116 48.3
CiPaw.07G212400 Carya illinoinensis HOM05D001798 ORTHO05D005040 1.0e-18 97.1 115 50.4
PSO349G0296 Papaver somniferum HOM05D001798 ORTHO05D005040 1.0e-18 97.1 134 44.8
Prupe.1G460000 Prunus persica HOM05D001798 ORTHO05D005040 1.4e-18 96.7 116 48.3
BcaB05g22348 Brassica carinata HOM05D001798 ORTHO05D005040 1.8e-18 96.3 112 53.6
Ciclev10010310m.g Citrus clementina HOM05D001798 ORTHO05D005040 1.8e-18 96.3 116 50.0
FAN11G1762 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.8e-18 96.3 101 55.4
FAN20G2332 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.8e-18 96.3 116 47.4
Glyma.17G064300 Glycine max HOM05D001798 ORTHO05D005040 2.3e-18 95.9 121 51.2
Potri.018G006800 Populus trichocarpa HOM05D001798 ORTHO05D005040 4.0e-18 95.1 126 50.0
Phvul.003G146800 Phaseolus vulgaris HOM05D001798 ORTHO05D005040 5.2e-18 94.7 121 52.9
RcHm_v2.0_Chr1g0336341 Rosa chinensis HOM05D001798 ORTHO05D005040 5.2e-18 94.7 117 48.7
Lj4g0012331 Lotus japonicus HOM05D001798 ORTHO05D005040 6.8e-18 94.4 120 50.0
Sabra18G0014500 Salix brachista HOM05D000280 ORTHO05D006100 1.2e-17 93.6 126 50.0
Ca_21215_v3 Cicer arietinum L. HOM05D001798 ORTHO05D005040 2.0e-17 92.8 115 47.0
MD15G1107700 Malus domestica HOM05D001798 ORTHO05D005040 4.4e-17 91.7 124 45.2
Haze_21740 Corylus avellana HOM05D001798 ORTHO05D005040 2.2e-16 89.4 99 54.5
CiPaw.08G037100 Carya illinoinensis HOM05D001798 ORTHO05D005040 3.7e-16 88.6 127 42.5
HanXRQChr05g0137241 Helianthus annuus HOM05D001798 ORTHO05D005040 4.8e-16 88.2 140 42.1
FAN21G0239 Fragaria x ananassa HOM05D001798 ORTHO05D005040 6.3e-16 87.8 101 52.5
Medtr4g128470 Medicago truncatula HOM05D001798 ORTHO05D005040 6.3e-16 87.8 115 49.6
TPR.G5377 Trifolium pratense HOM05D001798 ORTHO05D005040 1.1e-15 87.0 114 49.1
BcaC04g19961 Brassica carinata HOM05D001798 ORTHO05D005040 1.8e-15 86.3 80 61.2
BolC9t57787H Brassica oleracea HOM05D001798 ORTHO05D005040 1.8e-15 86.3 80 61.2
MD08G1128200 Malus domestica HOM05D001798 ORTHO05D005040 1.8e-15 86.3 126 45.2
Thecc.09G007300 Theobroma cacao HOM05D001798 ORTHO05D005040 1.8e-15 86.3 77 59.7
CANSAT11G0905 Cannabis sativa HOM05D001798 ORTHO05D005040 4.1e-15 85.1 147 37.4
Atru.chr7.2645 Acer truncatum HOM05D001798 ORTHO05D005040 5.4e-15 84.7 127 48.0
AUR62022665 Chenopodium quinoa HOM05D001798 ORTHO05D005040 5.4e-15 84.7 129 44.2
FAN15G2712 Fragaria x ananassa HOM05D001798 ORTHO05D005040 5.4e-15 84.7 109 45.9
Sc01g0002270 Simmondsia chinensis HOM05D001798 ORTHO05D005040 1.2e-14 83.6 135 44.4
Lsat_1_v5_gn_8_67120 Lactuca sativa HOM05D001798 ORTHO05D005040 2.0e-14 82.8 134 44.0
Psat4g011600 Pisum sativum HOM05D001798 ORTHO05D005040 2.0e-14 82.8 112 50.9
Cpa.g.sc23.17 Carica papaya HOM05D001798 ORTHO05D005040 1.3e-13 80.1 117 44.4
ECA240G2061 Erigeron canadensis HOM05D001798 ORTHO05D005040 2.2e-13 79.3 144 38.9
PGSC0003DMG400026318 Solanum tuberosum HOM05D001798 ORTHO05D005040 8.5e-13 77.4 125 40.8
Ah.11g043870 Amaranthus hybridus HOM05D001798 ORTHO05D005040 1.9e-12 76.3 127 40.9
AUR62020597 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.9e-12 76.3 128 39.8
HanXRQChr09g0254491 Helianthus annuus HOM05D001798 ORTHO05D005040 2.5e-12 75.9 141 36.2
ATR0580G067 Amborella trichopoda HOM05D001798 ORTHO05D005040 4.2e-12 75.1 117 41.0
Lsat_1_v5_gn_7_54461 Lactuca sativa HOM05D001798 ORTHO05D005040 4.2e-12 75.1 120 43.3
Nn2g12703 Nelumbo nucifera HOM05D001798 ORTHO05D005040 9.4e-12 73.9 112 40.2
HPP92_017412 Vanilla planifolia HOM05D001798 ORTHO05D005040 1.6e-11 73.2 163 33.7
AUR62009071 Chenopodium quinoa HOM05D001798 ORTHO05D005040 2.7e-11 72.4 136 39.7
MBI16_g35928_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 1.0e-10 70.5 87 50.6
Os08g0448100 Oryza sativa ssp. japonica HOM05D001798 ORTHO05D005040 1.4e-10 70.1 142 37.3
HPP92_010486 Vanilla planifolia HOM05D001798 ORTHO05D005040 3.0e-10 68.9 155 32.9
Nitab4.5_0004131g0070 Nicotiana tabacum HOM05D001798 ORTHO05D005040 5.2e-10 68.2 130 37.7
EL10Ac2g03758 Beta vulgaris HOM05D001798 ORTHO05D005040 1.5e-09 66.6 145 35.9
Ah.05g179040 Amaranthus hybridus HOM05D001798 ORTHO05D005040 3.4e-09 65.5 156 33.3
Nitab4.5_0004131g0060 Nicotiana tabacum HOM05D001798 ORTHO05D005040 4.9e-08 61.6 117 36.8
Ciclev10010429m.g Citrus clementina HOM05D001798 ORTHO05D005040 6.3e-08 61.2 98 41.8
SHI04313 Sapria himalayana HOM05D001798 ORTHO05D005040 9.2e-07 57.4 86 43.0
Haze_21743 Corylus avellana HOM05D001798 ORTHO05D005040 4.5e-06 55.1 103 38.8
MELO3C013791.2 Cucumis melo HOM05D001798 ORTHO05D022392 4.5e-06 55.1 114 36.0
Sed0003670 Sechium edule HOM05D001798 ORTHO05D022392 4.5e-06 55.1 117 41.0
ClCG10G000980 Citrullus lanatus HOM05D001798 ORTHO05D022392 5.9e-06 54.7 111 39.6
Cfa013272 Carpinus fangiana HOM05D001798 ORTHO05D005040 7.7e-06 54.3 100 38.0


User provided reference genes

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