Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR383G0761 Trochodendron aralioides HOM05D005586 ORTHO05D007044 0.0e+00 1218.4 635 100.0
TAR626G0800 Trochodendron aralioides HOM05D005586 ORTHO05D007044 0.0e+00 1085.9 635 88.2
Nn4g25000 Nelumbo nucifera HOM05D005586 ORTHO05D007044 5.5e-289 997.3 616 84.6
Aqoxy7G02326 Aquilegia oxysepala HOM05D005586 ORTHO05D007044 6.2e-285 983.8 637 80.1
PSO170G6484 Papaver somniferum HOM05D005586 ORTHO05D007044 4.2e-281 971.1 635 78.6
Dinv41251 Davidia involucrata HOM05D005586 ORTHO05D007044 7.1e-281 970.3 626 81.3
Dinv25464 Davidia involucrata HOM05D005586 ORTHO05D007044 1.2e-280 969.5 625 80.3
CSS0030464 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 1.3e-279 966.1 625 79.4
PSO063G4043 Papaver somniferum HOM05D005586 ORTHO05D007044 1.1e-278 963.0 635 78.0
TWI60G0698 Tripterygium wilfordii HOM05D005586 ORTHO05D007044 1.7e-274 949.1 656 76.4
CSS0000496 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 1.0e-271 939.9 625 77.8
Rhsim07G0149700 Rhododendron simsii HOM05D005586 ORTHO05D007044 1.0e-271 939.9 628 76.4
Lj9P685T24 Lonicera japonica HOM05D005586 ORTHO05D007044 1.9e-270 935.6 639 76.8
ClCG06G013320 Citrullus lanatus HOM05D005586 ORTHO05D007044 2.6e-267 925.2 649 74.7
MELO3C017465.2 Cucumis melo HOM05D005586 ORTHO05D007044 3.4e-267 924.9 649 74.7
DCAR_017968 Daucus carota HOM05D005586 ORTHO05D007044 1.7e-266 922.5 635 75.0
COL.COLO4_33680 Corchorus olitorius HOM05D005586 ORTHO05D007044 2.2e-266 922.2 648 75.6
Sed0005590 Sechium edule HOM05D005586 ORTHO05D007044 5.0e-266 921.0 647 74.7
Lj4g0013239 Lotus japonicus HOM05D005586 ORTHO05D007044 6.5e-266 920.6 637 74.1
CsaV3_1G031580 Cucumis sativus L. HOM05D005586 ORTHO05D007044 3.6e-264 914.8 649 74.0
Duzib168G0896 Durio zibethinus HOM05D005586 ORTHO05D007044 3.6e-264 914.8 649 75.2
CiPaw.07G192200 Carya illinoinensis HOM05D005586 ORTHO05D007044 6.1e-264 914.1 652 74.2
Atru.chr7.639 Acer truncatum HOM05D005586 ORTHO05D007044 1.4e-263 912.9 650 73.7
RcHm_v2.0_Chr4g0402481 Rosa chinensis HOM05D005586 ORTHO05D007044 3.9e-263 911.4 649 73.5
CANSAT11G2700 Cannabis sativa HOM05D005586 ORTHO05D007044 2.6e-262 908.7 649 73.0
Sed0016049 Sechium edule HOM05D005586 ORTHO05D007044 2.6e-262 908.7 649 73.2
Glyma.17G063500 Glycine max HOM05D005586 ORTHO05D007044 4.4e-262 907.9 639 75.0
Lalb_Chr12g0199381 Lupinus albus HOM05D005586 ORTHO05D007044 7.4e-262 907.1 643 75.0
QL02p097708 Quercus lobata HOM05D005586 ORTHO05D007044 7.4e-262 907.1 652 74.2
Hma1.2p1_1025F.1_g249260 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 1.3e-261 906.4 595 79.5
arahy.Tifrunner.gnm1.ann1.F5X18S Arachis hypogaea HOM05D005586 ORTHO05D007044 4.8e-261 904.4 643 74.2
MBI03_g13495_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 8.2e-261 903.7 646 74.5
FAN18G4074 Fragaria x ananassa HOM05D005586 ORTHO05D007044 1.1e-260 903.3 651 72.8
Glyma.20G083600 Glycine max HOM05D005586 ORTHO05D007044 1.1e-260 903.3 640 75.0
FvH4_5g27790 Fragaria vesca HOM05D005586 ORTHO05D007044 2.4e-260 902.1 651 72.7
Eucgr.C02307 Eucalyptus grandis HOM05D005586 ORTHO05D007044 3.1e-260 901.7 651 72.7
Lj7P472T26 Lonicera japonica HOM05D005586 ORTHO05D007044 3.1e-260 901.7 636 73.3
Prupe.2G007900 Prunus persica HOM05D005586 ORTHO05D007044 3.1e-260 901.7 659 72.4
Haze_22099 Corylus avellana HOM05D005586 ORTHO05D007044 5.3e-260 901.0 647 73.6
FAN08G2362 Fragaria x ananassa HOM05D005586 ORTHO05D007044 5.3e-260 901.0 649 72.7
Phvul.003G146100 Phaseolus vulgaris HOM05D005586 ORTHO05D007044 5.3e-260 901.0 638 74.6
Gorai.004G099900 Gossypium raimondii HOM05D005586 ORTHO05D007044 6.9e-260 900.6 651 73.7
Potri.006G168200 Populus trichocarpa HOM05D005586 ORTHO05D007044 1.2e-259 899.8 662 71.6
Sabra06G0129800 Salix brachista HOM05D005586 ORTHO05D007044 1.5e-259 899.4 662 71.9
Ah.14g083790 Amaranthus hybridus HOM05D005586 ORTHO05D007044 2.0e-259 899.0 645 73.2
Gohir.A08G084500 Gossypium hirsutum HOM05D005586 ORTHO05D007044 5.9e-259 897.5 651 73.6
Ca_21173_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 1.3e-258 896.3 640 73.3
Ca_21222_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 1.3e-258 896.3 640 73.3
Cfa013507 Carpinus fangiana HOM05D005586 ORTHO05D007044 2.2e-258 895.6 649 73.0
ECA234G4574 Erigeron canadensis HOM05D005586 ORTHO05D007044 2.9e-258 895.2 635 74.3
PGR102G3328 Punica granatum HOM05D005586 ORTHO05D007044 1.2e-256 889.8 638 73.5
Cpa.g.sc95.50 Carica papaya HOM05D005586 ORTHO05D007044 3.6e-256 888.3 633 74.4
GSVIVG01029208001 Vitis vinifera HOM05D005586 ORTHO05D007044 3.6e-256 888.3 636 74.8
Ciclev10007551m.g Citrus clementina HOM05D005586 ORTHO05D007044 2.3e-255 885.6 653 71.4
VMungo1215G0758 Vigna mungo HOM05D005586 ORTHO05D007044 3.0e-255 885.2 624 75.5
Sc08g0005320 Simmondsia chinensis HOM05D005586 ORTHO05D007044 5.2e-255 884.4 636 73.6
EL10Ac8g18286 Beta vulgaris HOM05D005586 ORTHO05D007044 6.7e-255 884.0 651 71.4
MD13G1254800 Malus domestica HOM05D005586 ORTHO05D007044 1.3e-253 879.8 633 72.7
Psat0s509g0200 Pisum sativum HOM05D005586 ORTHO05D007044 1.3e-253 879.8 640 72.7
Thecc.09G173100 Theobroma cacao HOM05D005586 ORTHO05D007044 2.8e-253 878.6 632 74.7
Medtr4g128210 Medicago truncatula HOM05D005586 ORTHO05D007044 3.7e-253 878.2 641 72.7
Lsat_1_v5_gn_5_84680 Lactuca sativa HOM05D005586 ORTHO05D007044 8.2e-253 877.1 639 72.8
CDE04G2484 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 6.5e-250 867.5 631 72.4
Peaxi162Scf00231g00064 Petunia axillaris HOM05D005586 ORTHO05D007044 1.1e-249 866.7 647 70.9
Cc06_g13260 Coffea canephora HOM05D005586 ORTHO05D007044 1.2e-248 863.2 645 71.5
MSTRG.6212 Avicennia marina HOM05D005586 ORTHO05D007044 2.7e-248 862.1 644 70.0
PGSC0003DMG400011415 Solanum tuberosum HOM05D005586 ORTHO05D007044 2.7e-248 862.1 645 70.4
Solyc10g078790.1 Solanum lycopersicum HOM05D005586 ORTHO05D007044 4.7e-248 861.3 645 70.5
Sopen10g029410 Solanum pennellii HOM05D005586 ORTHO05D007044 6.1e-248 860.9 645 70.5
Manes.14G153700 Manihot esculenta HOM05D005586 ORTHO05D007044 8.0e-248 860.5 632 72.0
Nitab4.5_0000730g0080 Nicotiana tabacum HOM05D005586 ORTHO05D007044 8.8e-247 857.1 647 69.7
Aa31LG3G13340 Aethionema arabicum HOM05D005586 ORTHO05D007044 2.0e-246 855.9 653 69.5
CAN.G1161.32 Capsicum annuum HOM05D005586 ORTHO05D007044 3.7e-245 851.7 651 69.4
THA.LOC104811789 Tarenaya hassleriana HOM05D005586 ORTHO05D007044 4.8e-245 851.3 653 69.2
PSO541G5977 Papaver somniferum HOM05D005586 ORTHO05D007044 1.8e-244 849.4 650 69.2
Oeu025223.1 Olea europaea HOM05D005586 ORTHO05D007044 6.5e-242 840.9 644 69.4
Nitab4.5_0000455g0040 Nicotiana tabacum HOM05D005586 ORTHO05D007044 4.2e-241 838.2 636 69.7
Nitab4.5_0004134g0010 Nicotiana tabacum HOM05D005586 ORTHO05D007044 7.2e-241 837.4 636 69.7
Carub.0008s1797 Capsella rubella HOM05D005586 ORTHO05D007044 2.7e-240 835.5 659 68.0
AL8G33420 Arabidopsis lyrata HOM05D005586 ORTHO05D007044 4.7e-240 834.7 657 68.0
CARHR271250 Cardamine hirsuta HOM05D005586 ORTHO05D007044 8.0e-240 833.9 664 67.0
BcaB01g04458 Brassica carinata HOM05D005586 ORTHO05D007044 1.0e-239 833.6 655 67.9
AT5G57460 Arabidopsis thaliana HOM05D005586 ORTHO05D007044 2.3e-239 832.4 661 67.3
Sp6g19170 Schrenkiella parvula HOM05D005586 ORTHO05D007044 4.0e-239 831.6 655 67.5
BraA10t43568Z Brassica rapa HOM05D005586 ORTHO05D007044 2.0e-238 829.3 652 68.6
MBI14_g17367_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 2.0e-238 829.3 640 68.4
BcaB08g36100 Brassica carinata HOM05D005586 ORTHO05D007044 2.6e-238 828.9 654 67.9
SGA_v2.0_scaffold17G07909 Striga asiatica HOM05D005586 ORTHO05D007044 7.5e-238 827.4 638 68.8
Thhalv10015707m.g Eutrema salsugineum HOM05D005586 ORTHO05D007044 1.3e-237 826.6 656 67.2
A03p12820 Brassica napus HOM05D005586 ORTHO05D007044 1.7e-237 826.2 656 67.5
BolC3t13940H Brassica oleracea HOM05D005586 ORTHO05D007044 2.8e-237 825.5 657 67.4
BraA03t10590Z Brassica rapa HOM05D005586 ORTHO05D007044 2.8e-237 825.5 655 67.5
ATR0618G120 Amborella trichopoda HOM05D005586 ORTHO05D007044 3.7e-237 825.1 637 68.1
BcaC01g06487 Brassica carinata HOM05D005586 ORTHO05D007044 3.7e-237 825.1 655 67.8
Migut.J01477 Erythranthe guttata HOM05D005586 ORTHO05D007044 4.8e-237 824.7 645 66.7
C09p49310 Brassica napus HOM05D005586 ORTHO05D007044 1.1e-236 823.5 658 67.0
BcaC04g19966 Brassica carinata HOM05D005586 ORTHO05D007044 1.4e-236 823.2 660 66.8
C03p14980 Brassica napus HOM05D005586 ORTHO05D007044 1.4e-236 823.2 658 67.2
A10p14890 Brassica napus HOM05D005586 ORTHO05D007044 1.8e-236 822.8 655 67.0
Oeu009835.1 Olea europaea HOM05D005586 ORTHO05D007044 7.0e-236 820.8 650 67.8
Gohir.D08G094100 Gossypium hirsutum HOM05D005586 ORTHO05D007044 7.7e-235 817.4 651 68.5
TPR.G5407 Trifolium pratense HOM05D005586 ORTHO05D007044 6.5e-234 814.3 580 73.3
Aa31LG3G220 Aethionema arabicum HOM05D005586 ORTHO05D007044 1.5e-233 813.1 651 67.3
AUR62021301 Chenopodium quinoa HOM05D005586 ORTHO05D007044 4.7e-232 808.1 647 67.1
AUR62033219 Chenopodium quinoa HOM05D005586 ORTHO05D007044 1.8e-231 806.2 647 66.9
BolC9t57782H Brassica oleracea HOM05D005586 ORTHO05D007044 1.4e-228 796.6 658 65.7
SHI41749 Sapria himalayana HOM05D005586 ORTHO05D007044 5.4e-228 794.7 653 65.4
Actinidia15717 Actinidia chinensis HOM05D005586 ORTHO05D007044 7.8e-227 790.8 616 68.0
SEGI_38070 Sequoiadendron giganteum HOM05D005586 ORTHO05D007044 2.8e-224 782.3 640 63.9
MD13G1254300 Malus domestica HOM05D005586 ORTHO05D007044 1.2e-216 756.9 647 65.2
MBI18_g04576_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 8.9e-215 750.7 636 66.4
Actinidia14649 Actinidia chinensis HOM05D005586 ORTHO05D007044 9.2e-212 740.7 532 73.1
SalBow6G0691 Salvia bowleyana HOM05D005586 ORTHO05D007044 2.1e-208 729.6 638 61.6
Hma1.2p1_3184F.1_g333760 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 3.6e-208 728.8 631 65.6
SalBow1G5715 Salvia bowleyana HOM05D005586 ORTHO05D007044 1.2e-206 723.8 639 61.5
Zm00001eb414690 Zea mays HOM05D005586 ORTHO05D007044 1.2e-206 723.8 648 60.6
Os08g0243900 Oryza sativa ssp. japonica HOM05D005586 ORTHO05D007044 4.9e-205 718.4 653 60.6
CDE02G2425 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 1.5e-190 670.2 639 59.3
MBI16_g35931_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 2.1e-176 623.2 547 64.5
BcaC01g06491 Brassica carinata HOM05D005586 ORTHO05D007044 5.6e-169 598.6 616 56.7
Mapoly0111s0055 Marchantia polymorpha HOM05D005586 ORTHO05D007044 9.0e-159 564.7 659 50.7
Pp3c25_4850 Physcomitrium patens HOM05D005586 ORTHO05D007044 1.1e-151 541.2 657 46.1
BcaC01g06494 Brassica carinata HOM05D005586 ORTHO05D007044 5.9e-150 535.4 616 52.9
AagrBONN_evm.TU.Sc2ySwM_368.670 Anthoceros agrestis HOM05D005586 ORTHO05D007044 2.7e-139 500.0 666 45.2
COL.COLO4_04392 Corchorus olitorius HOM05D005586 ORTHO05D007044 2.7e-123 446.8 350 68.3
unitig_899.g14852 Utricularia gibba HOM05D005586 ORTHO05D007044 1.0e-109 401.7 322 68.3
SMO228G0090 Selaginella moellendorffii HOM05D005586 ORTHO05D007044 2.4e-103 380.6 392 53.8
unitig_899.g14851 Utricularia gibba HOM05D005586 ORTHO05D007044 2.3e-90 337.4 243 67.9
HPP92_000781 Vanilla planifolia HOM05D005586 ORTHO05D007044 2.7e-70 270.8 297 52.9
CBR_g26159 Chara braunii HOM05D005586 ORTHO05D000002 4.6e-46 190.3 567 29.8
QL11p053068 Quercus lobata HOM05D005586 ORTHO05D007044 5.0e-40 170.2 118 77.1
MD16G1258000 Malus domestica HOM05D005586 ORTHO05D007044 3.0e-37 161.0 118 66.9
MD16G1258100 Malus domestica HOM05D005586 ORTHO05D007044 2.2e-24 118.2 116 56.9
Oeu013635.1 Olea europaea HOM05D006172 ORTHO05D005515 1.7e-16 92.0 89 56.2
CBR_g26157 Chara braunii HOM05D005586 ORTHO05D007044 1.8e-13 82.0 77 53.2
MBI16_g35934_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 2.3e-13 81.6 51 68.6
MBI16_g35933_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009834 1.7e-11 75.5 44 84.1
CDE04G1231 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 2.2e-08 65.1 198 29.8
SalBow4G0612 Salvia bowleyana HOM05D005586 ORTHO05D360416 2.5e-07 61.6 46 56.5


User provided reference genes

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