Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR383G0714 Trochodendron aralioides HOM05D007609 ORTHO05D009539 2.2e-47 191.8 89 100.0
TAR626G0143 Trochodendron aralioides HOM05D007609 ORTHO05D025968 5.0e-23 110.9 86 60.5
CSS0012617 Camellia sinensis var. sinensis HOM05D007609 ORTHO05D009539 1.0e-20 103.2 83 61.4
Haze_25706 Corylus avellana HOM05D007609 ORTHO05D009539 8.8e-20 100.1 85 58.8
Aqoxy7G01699 Aquilegia oxysepala HOM05D007609 ORTHO05D009539 4.8e-18 94.4 88 52.3
Nn8g39210 Nelumbo nucifera HOM05D007609 ORTHO05D009539 8.3e-18 93.6 77 58.4
Nn2g11764 Nelumbo nucifera HOM05D007609 ORTHO05D009539 1.8e-17 92.4 91 49.5
Thecc.09G111700 Theobroma cacao HOM05D007609 ORTHO05D009539 1.8e-17 92.4 85 49.4
Hma1.2p1_0018F.1_g013450 Hydrangea macrophylla HOM05D007609 ORTHO05D009539 2.0e-16 89.0 83 50.6
Sabra18G0066900 Salix brachista HOM05D007609 ORTHO05D009539 5.9e-16 87.4 82 52.4
Dinv38045 Davidia involucrata HOM05D007609 ORTHO05D009539 7.7e-16 87.0 86 51.2
Hma1.2p1_0092F.1_g046650 Hydrangea macrophylla HOM05D007609 ORTHO05D009539 1.3e-15 86.3 85 50.6
Manes.16G116800 Manihot esculenta HOM05D007609 ORTHO05D009539 8.6e-15 83.6 82 46.3
Potri.018G078900 Populus trichocarpa HOM05D007609 ORTHO05D009539 1.5e-14 82.8 82 48.8
Gohir.A07G006801 Gossypium hirsutum HOM05D007609 ORTHO05D009539 7.2e-14 80.5 77 54.5
Cfa003264 Carpinus fangiana HOM05D007609 ORTHO05D009539 9.5e-14 80.1 85 51.8
Gohir.A06G061700 Gossypium hirsutum HOM05D007609 ORTHO05D009539 9.5e-14 80.1 85 44.7
Rhsim08G0221700 Rhododendron simsii HOM05D007609 ORTHO05D009539 1.2e-13 79.7 54 63.0
Gohir.D07G005100 Gossypium hirsutum HOM05D007609 ORTHO05D009539 2.1e-13 79.0 70 55.7
Manes.03G019500 Manihot esculenta HOM05D007609 ORTHO05D009539 2.1e-13 79.0 71 50.7
Gorai.001G004700 Gossypium raimondii HOM05D007609 ORTHO05D009539 2.8e-13 78.6 73 52.1
Cpa.g.sc451.1 Carica papaya HOM05D007609 ORTHO05D009539 3.6e-13 78.2 92 43.5
Gohir.D06G060000 Gossypium hirsutum HOM05D007609 ORTHO05D009539 3.6e-13 78.2 81 45.7
Gohir.D08G261700 Gossypium hirsutum HOM05D007609 ORTHO05D009539 3.6e-13 78.2 81 45.7
Gorai.004G279800 Gossypium raimondii HOM05D007609 ORTHO05D009539 3.6e-13 78.2 81 45.7
Gorai.010G069800 Gossypium raimondii HOM05D007609 ORTHO05D009539 3.6e-13 78.2 85 44.7
Potri.006G159300 Populus trichocarpa HOM05D007609 ORTHO05D009539 1.0e-12 76.6 87 42.5
Gohir.A08G241000 Gossypium hirsutum HOM05D007609 ORTHO05D009539 2.3e-12 75.5 81 44.4
Glyma.07G087100 Glycine max HOM05D007609 ORTHO05D009539 4.0e-12 74.7 87 44.8
Medtr8g083460 Medicago truncatula HOM05D007609 ORTHO05D009539 5.2e-12 74.3 86 48.8
TPR.G35275 Trifolium pratense HOM05D007609 ORTHO05D009539 5.2e-12 74.3 83 44.6
vmacro18908 Vaccinium macrocarpon HOM05D007609 ORTHO05D009539 6.8e-12 73.9 60 56.7
Atru.chr7.1339 Acer truncatum HOM05D007609 ORTHO05D009539 8.9e-12 73.6 77 50.6
Lj2g0010717 Lotus japonicus HOM05D007609 ORTHO05D009539 8.9e-12 73.6 81 44.4
Ciclev10010038m.g Citrus clementina HOM05D007609 ORTHO05D009539 4.4e-11 71.2 87 50.6
Eucgr.C03849 Eucalyptus grandis HOM05D007609 ORTHO05D009539 4.4e-11 71.2 98 42.9
QL05p023464 Quercus lobata HOM05D007609 ORTHO05D009539 4.4e-11 71.2 86 41.9
Lalb_Chr22g0352851 Lupinus albus HOM05D007609 ORTHO05D009539 5.7e-11 70.9 83 43.4
QL02p085521 Quercus lobata HOM05D007609 ORTHO05D009539 2.8e-10 68.6 80 47.5
Phvul.004G162600 Phaseolus vulgaris HOM05D007609 ORTHO05D009539 3.7e-10 68.2 84 42.9
Ca_25525_v3 Cicer arietinum L. HOM05D007609 ORTHO05D009539 6.3e-10 67.4 81 40.7
Glyma.09G189800 Glycine max HOM05D007609 ORTHO05D009539 6.3e-10 67.4 81 40.7
unitig_899.g14776 Utricularia gibba HOM05D007609 ORTHO05D009539 8.3e-10 67.0 49 55.1
Sc18g0001160 Simmondsia chinensis HOM05D007609 ORTHO05D009539 1.1e-09 66.6 42 64.3
Solyc03g120155.1 Solanum lycopersicum HOM05D007609 ORTHO05D009539 2.4e-09 65.5 42 69.0
COL.COLO4_34908 Corchorus olitorius HOM05D007609 ORTHO05D009539 3.1e-09 65.1 30 80.0
HanXRQChr10g0317871 Helianthus annuus HOM05D007609 ORTHO05D009539 4.1e-09 64.7 49 57.1
Psat1g041120 Pisum sativum HOM05D007609 ORTHO05D009539 4.1e-09 64.7 75 46.7
QL10p054851 Quercus lobata HOM05D007609 ORTHO05D009539 4.1e-09 64.7 69 44.9
Migut.D01028 Erythranthe guttata HOM05D007609 ORTHO05D009539 7.0e-09 63.9 34 73.5
AUR62011005 Chenopodium quinoa HOM05D007609 ORTHO05D009539 9.2e-09 63.5 81 42.0
Lalb_Chr05g0222821 Lupinus albus HOM05D007609 ORTHO05D009539 9.2e-09 63.5 91 45.1
PGSC0003DMG400016536 Solanum tuberosum HOM05D007609 ORTHO05D009539 9.2e-09 63.5 49 55.1
Nitab4.5_0005851g0050 Nicotiana tabacum HOM05D007609 ORTHO05D009539 1.2e-08 63.2 58 55.2
PGSC0003DMG400005604 Solanum tuberosum HOM05D007609 ORTHO05D009539 1.6e-08 62.8 78 39.7
Lj4g0003308 Lotus japonicus HOM05D007609 ORTHO05D009539 2.0e-08 62.4 41 63.4
Nitab4.5_0000351g0200 Nicotiana tabacum HOM05D007609 ORTHO05D009539 2.0e-08 62.4 36 63.9
Solyc06g066700.1 Solanum lycopersicum HOM05D007609 ORTHO05D009539 2.0e-08 62.4 45 57.8
SGA_v2.0_scaffold5G02584 Striga asiatica HOM05D007609 ORTHO05D009539 2.0e-08 62.4 91 39.6
CiPaw.01G239000 Carya illinoinensis HOM05D007609 ORTHO05D009539 2.7e-08 62.0 87 40.2
Peaxi162Scf00015g00416 Petunia axillaris HOM05D007609 ORTHO05D009539 2.7e-08 62.0 85 40.0
Sopen03g039030 Solanum pennellii HOM05D007609 ORTHO05D009539 2.7e-08 62.0 41 68.3
AUR62016446 Chenopodium quinoa HOM05D007609 ORTHO05D009539 3.5e-08 61.6 64 48.4
Peaxi162Scf00207g00095 Petunia axillaris HOM05D007609 ORTHO05D009539 3.5e-08 61.6 35 65.7
DCAR_028717 Daucus carota HOM05D007609 ORTHO05D009539 4.5e-08 61.2 67 46.3
Eucgr.F03018 Eucalyptus grandis HOM05D007609 ORTHO05D009539 4.5e-08 61.2 76 40.8
FvH4_1g05030 Fragaria vesca HOM05D007609 ORTHO05D009539 4.5e-08 61.2 90 40.0
Lsat_1_v5_gn_5_101501 Lactuca sativa HOM05D007609 ORTHO05D009539 4.5e-08 61.2 41 58.5
Sopen06g024990 Solanum pennellii HOM05D007609 ORTHO05D009539 4.5e-08 61.2 45 57.8
TAR624G1182 Trochodendron aralioides HOM05D007609 ORTHO05D009539 4.5e-08 61.2 75 48.0
Eucgr.C01049 Eucalyptus grandis HOM05D007609 ORTHO05D009539 5.9e-08 60.8 84 39.3
FAN26G1953 Fragaria x ananassa HOM05D007609 ORTHO05D009539 7.8e-08 60.5 90 40.0
FAN26G2876 Fragaria x ananassa HOM05D007609 ORTHO05D009539 7.8e-08 60.5 90 40.0
FAN28G0995 Fragaria x ananassa HOM05D007609 ORTHO05D009539 7.8e-08 60.5 91 42.9
Lsat_1_v5_gn_4_103641 Lactuca sativa HOM05D007609 ORTHO05D009539 7.8e-08 60.5 33 69.7
Migut.I00869 Erythranthe guttata HOM05D007609 ORTHO05D009539 1.0e-07 60.1 36 61.1
Ah.14g081870 Amaranthus hybridus HOM05D007609 ORTHO05D009539 1.7e-07 59.3 72 43.1
Medtr6g086445 Medicago truncatula HOM05D007609 ORTHO05D009539 1.7e-07 59.3 81 34.6
PGSC0003DMG400005605 Solanum tuberosum HOM05D007609 ORTHO05D009539 1.7e-07 59.3 31 74.2
VMungo0464G1934 Vigna mungo HOM05D007609 ORTHO05D009539 1.7e-07 59.3 84 36.9
AUR62021516 Chenopodium quinoa HOM05D007609 ORTHO05D009539 2.3e-07 58.9 81 39.5
RcHm_v2.0_Chr2g0090641 Rosa chinensis HOM05D007609 ORTHO05D009539 2.3e-07 58.9 90 40.0
Nitab4.5_0003351g0110 Nicotiana tabacum HOM05D007609 ORTHO05D009539 2.9e-07 58.5 32 65.6
CsaV3_1G030560 Cucumis sativus L. HOM05D007609 ORTHO05D009539 3.9e-07 58.2 83 39.8
DCAR_023052 Daucus carota HOM05D007609 ORTHO05D009539 3.9e-07 58.2 59 47.5
Prupe.7G229700 Prunus persica HOM05D007609 ORTHO05D009539 5.0e-07 57.8 97 39.2
BcaB04g17155 Brassica carinata HOM05D010933 ORTHO05D013136 6.6e-07 57.4 39 56.4
Zm00001eb369910 Zea mays HOM05D026810 ORTHO05D025968 6.6e-07 57.4 81 40.7
AL4G13500 Arabidopsis lyrata HOM05D010933 ORTHO05D013136 8.6e-07 57.0 41 53.7
CARHR042480 Cardamine hirsuta HOM05D010933 ORTHO05D013136 8.6e-07 57.0 40 57.5
Peaxi162Scf00560g00120 Petunia axillaris HOM05D007609 ORTHO05D009539 8.6e-07 57.0 76 39.5
Solyc03g120160.1 Solanum lycopersicum HOM05D007609 ORTHO05D009539 8.6e-07 57.0 25 80.0
Sopen03g039040 Solanum pennellii HOM05D007609 ORTHO05D009539 8.6e-07 57.0 25 80.0
AT1G52342 Arabidopsis thaliana HOM05D010933 ORTHO05D013136 1.1e-06 56.6 41 53.7
AL1G60560 Arabidopsis lyrata HOM05D010933 ORTHO05D013136 2.5e-06 55.5 43 51.2
ATR0559G294 Amborella trichopoda HOM05D007609 ORTHO05D009539 4.3e-06 54.7 32 59.4
MELO3C024233.2 Cucumis melo HOM05D010933 ORTHO05D013136 4.3e-06 54.7 48 50.0
A08p02170 Brassica napus HOM05D010933 ORTHO05D013136 7.3e-06 53.9 38 57.9
C03p90620 Brassica napus HOM05D010933 ORTHO05D013136 7.3e-06 53.9 38 57.9
BolC3t21384H Brassica oleracea HOM05D010933 ORTHO05D013136 7.3e-06 53.9 38 57.9
Sp1g38930 Schrenkiella parvula HOM05D010933 ORTHO05D013136 7.3e-06 53.9 57 42.1


User provided reference genes

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