Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR383G0711 Trochodendron aralioides HOM05D005658 ORTHO05D006989 3.6e-106 388.3 196 100.0
Nn3g18122 Nelumbo nucifera HOM05D005658 ORTHO05D006989 1.3e-87 326.6 196 81.6
Lj5g0010105 Lotus japonicus HOM05D005658 ORTHO05D006989 1.8e-86 322.8 196 82.1
CiPaw.01G234800 Carya illinoinensis HOM05D005658 ORTHO05D006989 2.0e-85 319.3 196 81.1
Glyma.07G018600 Glycine max HOM05D005658 ORTHO05D006989 2.0e-85 319.3 196 79.6
CAN.G438.34 Capsicum annuum HOM05D005658 ORTHO05D006989 7.8e-85 317.4 191 79.1
Eucgr.J02954 Eucalyptus grandis HOM05D005658 ORTHO05D006989 7.8e-85 317.4 196 78.1
Lj5g0006747 Lotus japonicus HOM05D005658 ORTHO05D006989 7.8e-85 317.4 190 82.1
Manes.04G130900 Manihot esculenta HOM05D005658 ORTHO05D006989 2.3e-84 315.8 196 77.6
TPR.G38603 Trifolium pratense HOM05D005658 ORTHO05D006989 2.3e-84 315.8 196 79.1
Solyc03g120540.3 Solanum lycopersicum HOM05D005658 ORTHO05D006989 2.9e-84 315.5 191 79.1
PGSC0003DMG400002629 Solanum tuberosum HOM05D005658 ORTHO05D006989 1.5e-83 313.2 191 78.5
Aqoxy7G01547 Aquilegia oxysepala HOM05D005658 ORTHO05D006989 1.9e-83 312.8 195 78.5
Duzib235G1329 Durio zibethinus HOM05D005658 ORTHO05D006989 3.3e-83 312.0 196 78.1
Nitab4.5_0001315g0030 Nicotiana tabacum HOM05D005658 ORTHO05D006989 4.3e-83 311.6 190 78.4
Potri.003G051700 Populus trichocarpa HOM05D005658 ORTHO05D006989 4.3e-83 311.6 196 76.5
PGR102G0856 Punica granatum HOM05D005658 ORTHO05D006989 4.3e-83 311.6 197 78.7
Nitab4.5_0004205g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 7.3e-83 310.8 190 78.4
Glyma.08G203800 Glycine max HOM05D005658 ORTHO05D006989 1.6e-82 309.7 196 78.6
GSVIVG01017054001 Vitis vinifera HOM05D005658 ORTHO05D006989 2.8e-82 308.9 196 78.6
arahy.Tifrunner.gnm1.ann1.5XEL3K Arachis hypogaea HOM05D005658 ORTHO05D006989 3.6e-82 308.5 195 75.9
Lalb_Chr04g0262841 Lupinus albus HOM05D005658 ORTHO05D006989 3.6e-82 308.5 195 75.4
Psat5g078360 Pisum sativum HOM05D005658 ORTHO05D006989 3.6e-82 308.5 196 77.0
Prupe.3G064800 Prunus persica HOM05D005658 ORTHO05D006989 3.6e-82 308.5 193 78.2
SalBow7G0412 Salvia bowleyana HOM05D005658 ORTHO05D006989 4.7e-82 308.1 189 78.3
Thecc.06G094500 Theobroma cacao HOM05D005658 ORTHO05D006989 4.7e-82 308.1 196 78.1
Actinidia08995 Actinidia chinensis HOM05D005658 ORTHO05D006989 6.1e-82 307.8 191 79.1
Phvul.010G147700 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 8.0e-82 307.4 196 77.0
CANSAT56G4082 Cannabis sativa HOM05D005658 ORTHO05D006989 2.3e-81 305.8 196 78.6
Cc04_g02920 Coffea canephora HOM05D005658 ORTHO05D006989 3.0e-81 305.4 193 77.7
CDE08G1506 Ceratophyllum demersum HOM05D005658 ORTHO05D006989 2.0e-80 302.8 190 77.4
MSTRG.9467 Avicennia marina HOM05D005658 ORTHO05D006989 2.6e-80 302.4 188 77.7
Gohir.A02G119700 Gossypium hirsutum HOM05D005658 ORTHO05D006989 3.4e-80 302.0 193 75.6
Gohir.D03G062533 Gossypium hirsutum HOM05D005658 ORTHO05D006989 3.4e-80 302.0 193 75.6
CSS0031663 Camellia sinensis var. sinensis HOM05D005658 ORTHO05D006989 5.8e-80 301.2 190 77.4
FAN14G0081 Fragaria x ananassa HOM05D005658 ORTHO05D006989 5.8e-80 301.2 196 77.6
RcHm_v2.0_Chr2g0139251 Rosa chinensis HOM05D005658 ORTHO05D006989 9.8e-80 300.4 196 74.5
THA.LOC104817977 Tarenaya hassleriana HOM05D005658 ORTHO05D006989 9.8e-80 300.4 192 74.5
MBI04_g04855_MAGBIO Magnolia biondii HOM05D005658 ORTHO05D006989 1.7e-79 299.7 188 79.3
Haze_16346 Corylus avellana HOM05D005658 ORTHO05D006989 2.9e-79 298.9 196 75.0
ECA234G0336 Erigeron canadensis HOM05D005658 ORTHO05D006989 2.9e-79 298.9 196 75.0
MD09G1208600 Malus domestica HOM05D005658 ORTHO05D006989 2.9e-79 298.9 195 75.4
VMungo0331G1814 Vigna mungo HOM05D005658 ORTHO05D006989 8.3e-79 297.4 195 74.9
Gorai.003G064300 Gossypium raimondii HOM05D005658 ORTHO05D006989 1.1e-78 297.0 193 75.1
Psat7g255000 Pisum sativum HOM05D005658 ORTHO05D006989 1.1e-78 297.0 196 74.5
EL10Ac9g22053 Beta vulgaris HOM05D005658 ORTHO05D006989 3.2e-78 295.4 196 73.5
FAN02G2498 Fragaria x ananassa HOM05D005658 ORTHO05D006989 3.2e-78 295.4 196 75.5
Thhalv10021560m.g Eutrema salsugineum HOM05D005658 ORTHO05D006989 4.1e-78 295.0 197 74.6
FvH4_6g31890 Fragaria vesca HOM05D005658 ORTHO05D006989 5.4e-78 294.7 196 76.5
HanXRQChr10g0313501 Helianthus annuus HOM05D005658 ORTHO05D006989 5.4e-78 294.7 187 77.0
SGA_v2.0_scaffold68G22977 Striga asiatica HOM05D005658 ORTHO05D006989 5.4e-78 294.7 187 75.9
CARHR091380 Cardamine hirsuta HOM05D005658 ORTHO05D006989 7.0e-78 294.3 197 74.1
ATR0736G109 Amborella trichopoda HOM05D005658 ORTHO05D006989 1.6e-77 293.1 188 73.4
Migut.D01014 Erythranthe guttata HOM05D005658 ORTHO05D006989 1.6e-77 293.1 190 74.2
Dinv38010 Davidia involucrata HOM05D005658 ORTHO05D006989 2.0e-77 292.7 169 83.4
CANSAT56G2118 Cannabis sativa HOM05D005658 ORTHO05D006989 2.7e-77 292.4 195 73.8
PSO210G2136 Papaver somniferum HOM05D005658 ORTHO05D006989 2.7e-77 292.4 196 75.5
GSVIVG01017053001 Vitis vinifera HOM05D005658 ORTHO05D006989 2.7e-77 292.4 196 73.0
AT3G16190 Arabidopsis thaliana HOM05D005658 ORTHO05D006989 3.5e-77 292.0 197 73.6
Sopen03g039400 Solanum pennellii HOM05D005658 ORTHO05D006989 3.5e-77 292.0 178 79.2
Sp3g14560 Schrenkiella parvula HOM05D005658 ORTHO05D006989 4.6e-77 291.6 197 73.6
Cfa002103 Carpinus fangiana HOM05D005658 ORTHO05D006989 1.0e-76 290.4 196 73.5
DCAR_016205 Daucus carota HOM05D005658 ORTHO05D006989 1.3e-76 290.0 189 77.8
Ciclev10026541m.g Citrus clementina HOM05D005658 ORTHO05D006989 1.7e-76 289.7 190 73.7
AL3G28880 Arabidopsis lyrata HOM05D005658 ORTHO05D006989 2.3e-76 289.3 197 72.6
RcHm_v2.0_Chr2g0139241 Rosa chinensis HOM05D005658 ORTHO05D006989 8.6e-76 287.3 190 75.3
PSO210G3060 Papaver somniferum HOM05D005658 ORTHO05D006989 1.5e-75 286.6 194 76.3
unitig_746.g26661 Utricularia gibba HOM05D005658 ORTHO05D006989 7.3e-75 284.3 187 73.3
arahy.Tifrunner.gnm1.ann1.JS39C6 Arachis hypogaea HOM05D005658 ORTHO05D006989 2.8e-74 282.3 195 73.3
BcaC09g48588 Brassica carinata HOM05D005658 ORTHO05D006989 6.2e-74 281.2 197 70.1
QL05p021437 Quercus lobata HOM05D005658 ORTHO05D006989 8.0e-74 280.8 170 81.8
Lj9A509T93 Lonicera japonica HOM05D005658 ORTHO05D006989 1.8e-73 279.6 169 82.2
A05p33310 Brassica napus HOM05D005658 ORTHO05D006989 6.8e-73 277.7 198 69.7
VMungo0331G0597 Vigna mungo HOM05D005658 ORTHO05D006989 6.8e-73 277.7 196 70.4
PSO421G0294 Papaver somniferum HOM05D005658 ORTHO05D006989 8.9e-73 277.3 189 73.0
COL.COLO4_30455 Corchorus olitorius HOM05D005658 ORTHO05D006989 1.5e-72 276.6 190 72.1
SalBow7G1899 Salvia bowleyana HOM05D005658 ORTHO05D006989 1.5e-72 276.6 193 70.5
SEGI_12338 Sequoiadendron giganteum HOM05D005658 ORTHO05D006989 2.6e-72 275.8 186 70.4
C05p50310 Brassica napus HOM05D005658 ORTHO05D006989 3.4e-72 275.4 198 69.7
Ca_20421_v3 Cicer arietinum L. HOM05D005658 ORTHO05D006989 5.8e-72 274.6 171 78.4
Migut.D01013 Erythranthe guttata HOM05D005658 ORTHO05D006989 7.5e-72 274.2 177 73.4
Medtr4g011330 Medicago truncatula HOM05D005658 ORTHO05D006989 7.5e-72 274.2 171 78.4
Phvul.010G147800 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 1.3e-71 273.5 196 69.4
PSO063G2380 Papaver somniferum HOM05D005658 ORTHO05D006989 1.7e-71 273.1 196 69.9
Sabra03G0027300 Salix brachista HOM05D005658 ORTHO05D006989 1.7e-71 273.1 170 77.6
Sc12g0009500 Simmondsia chinensis HOM05D005658 ORTHO05D006989 2.2e-71 272.7 178 74.7
vmacro16973 Vaccinium macrocarpon HOM05D005658 ORTHO05D006989 2.9e-71 272.3 178 74.7
BraA05t22156Z Brassica rapa HOM05D005658 ORTHO05D006989 4.9e-71 271.6 206 67.5
Nitab4.5_0001968g0140 Nicotiana tabacum HOM05D005658 ORTHO05D006989 1.4e-70 270.0 192 71.9
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 3.2e-70 268.9 208 66.3
Oeu029646.1 Olea europaea HOM05D005658 ORTHO05D006989 5.4e-70 268.1 172 75.0
Gohir.D03G066800 Gossypium hirsutum HOM05D005658 ORTHO05D006989 1.2e-69 266.9 170 77.1
Rhsim12G0201100 Rhododendron simsii HOM05D005658 ORTHO05D006989 1.2e-69 266.9 171 76.0
Os02g0276400 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 1.6e-69 266.5 189 70.9
HPP92_003927 Vanilla planifolia HOM05D005658 ORTHO05D006989 1.6e-69 266.5 186 72.0
arahy.Tifrunner.gnm1.ann1.17ZCGM Arachis hypogaea HOM05D005658 ORTHO05D006989 3.5e-69 265.4 172 75.0
FAN05G4480 Fragaria x ananassa HOM05D005658 ORTHO05D006989 7.8e-69 264.2 169 78.1
Lsat_1_v5_gn_5_131001 Lactuca sativa HOM05D000012 ORTHO05D000804 1.7e-68 263.1 166 76.5
ClCG09G001890 Citrullus lanatus HOM05D005658 ORTHO05D006989 1.5e-67 260.0 195 64.1
COL.COLO4_30457 Corchorus olitorius HOM05D005658 ORTHO05D006989 3.3e-67 258.8 167 76.6
CsaV3_7G033450 Cucumis sativus L. HOM05D005658 ORTHO05D006989 3.3e-67 258.8 192 66.7
Sed0023183 Sechium edule HOM05D005658 ORTHO05D006989 5.6e-67 258.1 190 64.2
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 2.1e-66 256.1 189 68.8
Sed0000814 Sechium edule HOM05D005658 ORTHO05D006989 2.1e-66 256.1 196 64.8
AUR62011683 Chenopodium quinoa HOM05D005658 ORTHO05D006989 3.1e-65 252.3 170 72.9
MELO3C027085.2 Cucumis melo HOM05D005658 ORTHO05D006989 4.0e-65 251.9 195 66.2
Carub.0003s1594 Capsella rubella HOM05D005658 ORTHO05D006989 5.2e-65 251.5 169 73.4
SGA_v2.0_scaffold4G02011 Striga asiatica HOM05D005658 ORTHO05D006989 8.9e-65 250.8 170 71.8
Peaxi162Scf00015g00132 Petunia axillaris HOM05D005658 ORTHO05D006989 4.9e-63 245.0 188 66.5
Ah.01g021740 Amaranthus hybridus HOM05D005658 ORTHO05D006989 1.1e-62 243.8 170 71.2
Os02g0276200 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 3.2e-62 242.3 177 68.4
COL.COLO4_18473 Corchorus olitorius HOM05D005658 ORTHO05D006989 5.4e-62 241.5 190 66.3
Ciclev10026617m.g Citrus clementina HOM05D005658 ORTHO05D006989 1.6e-61 240.0 161 71.4
Psat7g255080 Pisum sativum HOM05D005658 ORTHO05D006989 4.6e-61 238.4 142 79.6
TPR.G40810 Trifolium pratense HOM05D005658 ORTHO05D006989 7.8e-61 237.7 142 80.3
AUR62016508 Chenopodium quinoa HOM05D005658 ORTHO05D006989 1.0e-60 237.3 189 65.1
AUR62016509 Chenopodium quinoa HOM05D005658 ORTHO05D006989 9.5e-59 230.7 170 66.5
SMO147G0229 Selaginella moellendorffii HOM05D005658 ORTHO05D006989 9.5e-59 230.7 192 60.4
Mapoly0052s0007 Marchantia polymorpha HOM05D005658 ORTHO05D006989 2.8e-58 229.2 188 59.6
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 4.0e-57 225.3 189 59.3
Pp3c13_4590 Physcomitrium patens HOM05D005658 ORTHO05D006989 7.6e-56 221.1 190 55.8
Psat5g078240 Pisum sativum HOM05D005658 ORTHO05D006989 3.2e-54 215.7 196 57.7
Nitab4.5_0003039g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 2.7e-53 212.6 192 59.4
Cpa.g.sc1241.2 Carica papaya HOM05D005658 ORTHO05D006989 4.6e-53 211.8 133 75.9
Haze_16345 Corylus avellana HOM05D003600 ORTHO05D004129 1.1e-51 207.2 125 80.8
CBR_g48432 Chara braunii HOM05D005658 ORTHO05D006989 8.1e-50 201.1 193 51.8
Atru.chr1.3413 Acer truncatum HOM05D005658 ORTHO05D006989 1.8e-49 199.9 120 82.5
Peaxi162Scf00015g00131 Petunia axillaris HOM05D005658 ORTHO05D006989 2.0e-48 196.4 190 55.8
Glyma.08G203700 Glycine max HOM05D005658 ORTHO05D006989 7.8e-45 184.5 118 77.1
Sed0018991 Sechium edule HOM05D005658 ORTHO05D006989 2.3e-44 183.0 133 62.4
Cre16.g674650 Chlamydomonas reinhardtii HOM05D005658 ORTHO05D006989 1.5e-40 170.2 187 47.6
AUR62011684 Chenopodium quinoa HOM05D005658 ORTHO05D006989 9.9e-40 167.5 170 53.5
Manes.11G037100 Manihot esculenta HOM05D005658 ORTHO05D006989 4.2e-38 162.2 171 52.0
CAN.G214.3 Capsicum annuum HOM05D005658 ORTHO05D006989 6.2e-26 121.7 117 55.6
QL02p037511 Quercus lobata HOM05D005658 ORTHO05D006989 9.0e-17 91.3 60 71.7
Atru.chr1.3414 Acer truncatum HOM05D005658 ORTHO05D006989 2.3e-12 76.6 52 67.3
TPR.G1351 Trifolium pratense HOM05D005658 ORTHO05D006989 8.8e-12 74.7 58 62.1
Zm00001eb237290 Zea mays HOM05D005658 ORTHO05D006989 1.8e-09 67.0 56 60.7
Sopen12g022580 Solanum pennellii HOM05D005658 ORTHO05D006989 2.4e-09 66.6 168 34.5
DCAR_026894 Daucus carota HOM05D006499 ORTHO05D007874 1.5e-08 63.9 170 30.0
HPP92_005057 Vanilla planifolia HOM05D006499 ORTHO05D007874 7.7e-08 61.6 178 29.8
Prupe.1G348500 Prunus persica HOM05D006499 ORTHO05D007874 6.5e-07 58.5 172 31.4
arahy.Tifrunner.gnm1.ann1.2JVF5K Arachis hypogaea HOM05D001175 ORTHO05D021501 1.1e-06 57.8 61 45.9
Lsat_1_v5_gn_8_80081 Lactuca sativa HOM05D006499 ORTHO05D007874 5.5e-06 55.5 178 30.3
Cpa.g.sc92.93 Carica papaya HOM05D006499 ORTHO05D007874 7.2e-06 55.1 173 30.1
COL.COLO4_33044 Corchorus olitorius HOM05D006499 ORTHO05D007874 7.2e-06 55.1 188 30.3
MBI06_g20294_MAGBIO Magnolia biondii HOM05D006499 ORTHO05D007874 7.2e-06 55.1 175 29.7
unitig_578.g16567 Utricularia gibba HOM05D006499 ORTHO05D007874 9.4e-06 54.7 173 29.5


User provided reference genes

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