Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR383G0705 Trochodendron aralioides HOM05D004383 ORTHO05D005050 3.2e-43 177.9 86 100.0
Nn1g03128 Nelumbo nucifera HOM05D004383 ORTHO05D005050 3.1e-30 134.8 69 92.8
Gohir.D06G105600 Gossypium hirsutum HOM05D004383 ORTHO05D005050 2.0e-29 132.1 67 92.5
Duzib168G1681 Durio zibethinus HOM05D004383 ORTHO05D005050 2.6e-29 131.7 69 91.3
Duzib187G0841 Durio zibethinus HOM05D004383 ORTHO05D005050 3.5e-29 131.3 69 89.9
PSO017G0706 Papaver somniferum HOM05D004383 ORTHO05D005050 3.5e-29 131.3 67 92.5
PSO170G1218 Papaver somniferum HOM05D004383 ORTHO05D005050 3.5e-29 131.3 67 92.5
RcHm_v2.0_Chr6g0299241 Rosa chinensis HOM05D004383 ORTHO05D005050 4.5e-29 131.0 69 89.9
Gorai.010G120200 Gossypium raimondii HOM05D004383 ORTHO05D005050 5.9e-29 130.6 67 91.0
Manes.03G007300 Manihot esculenta HOM05D004383 ORTHO05D005050 5.9e-29 130.6 69 88.4
Manes.16G131700 Manihot esculenta HOM05D004383 ORTHO05D005050 5.9e-29 130.6 69 88.4
Gohir.A05G061400 Gossypium hirsutum HOM05D004383 ORTHO05D005050 7.7e-29 130.2 67 91.0
Gohir.D05G063900 Gossypium hirsutum HOM05D004383 ORTHO05D005050 7.7e-29 130.2 67 91.0
Gorai.009G064600 Gossypium raimondii HOM05D004383 ORTHO05D005050 7.7e-29 130.2 67 91.0
Hma1.2p1_0355F.1_g133920 Hydrangea macrophylla HOM05D004383 ORTHO05D005050 7.7e-29 130.2 69 89.9
GSVIVG01035992001 Vitis vinifera HOM05D004383 ORTHO05D005050 7.7e-29 130.2 67 91.0
CiPaw.08G004800 Carya illinoinensis HOM05D004383 ORTHO05D005050 1.0e-28 129.8 69 88.4
FvH4_3g24420 Fragaria vesca HOM05D004383 ORTHO05D005050 1.0e-28 129.8 67 89.6
FAN05G0819 Fragaria x ananassa HOM05D004383 ORTHO05D005050 2.2e-28 128.6 67 89.6
FAN16G3501 Fragaria x ananassa HOM05D004383 ORTHO05D005050 2.2e-28 128.6 67 88.1
Lj7A737G42 Lonicera japonica HOM05D004383 ORTHO05D005050 2.2e-28 128.6 67 89.6
PGR044G2662 Punica granatum HOM05D004383 ORTHO05D005050 2.2e-28 128.6 69 88.4
FAN21G1236 Fragaria x ananassa HOM05D004383 ORTHO05D005050 2.9e-28 128.3 67 88.1
TAR625G0171 Trochodendron aralioides HOM05D004383 ORTHO05D005050 2.9e-28 128.3 69 88.4
TAR625G1552 Trochodendron aralioides HOM05D004383 ORTHO05D005050 2.9e-28 128.3 69 88.4
COL.COLO4_18979 Corchorus olitorius HOM05D002641 ORTHO05D005050 5.0e-28 127.5 69 85.5
FvH4_6g27370 Fragaria vesca HOM05D004383 ORTHO05D005050 5.0e-28 127.5 67 88.1
Atru.chr7.2584 Acer truncatum HOM05D004383 ORTHO05D005050 6.5e-28 127.1 67 89.6
CSS0047262 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 6.5e-28 127.1 69 84.1
Prupe.1G396200 Prunus persica HOM05D004383 ORTHO05D005050 6.5e-28 127.1 67 88.1
CDE02G0236 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 8.5e-28 126.7 69 85.5
Nn3g19885 Nelumbo nucifera HOM05D004383 ORTHO05D005050 8.5e-28 126.7 69 84.1
Thecc.09G012700 Theobroma cacao HOM05D004383 ORTHO05D005050 8.5e-28 126.7 67 89.6
CSS0026414 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 1.1e-27 126.3 69 85.5
MD15G1042900 Malus domestica HOM05D004383 ORTHO05D005050 1.1e-27 126.3 67 88.1
Rhsim07G0166500 Rhododendron simsii HOM05D004383 ORTHO05D005050 1.1e-27 126.3 69 87.0
Sed0012000 Sechium edule HOM05D004383 ORTHO05D005050 1.1e-27 126.3 69 85.5
CDE05G2494 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 1.5e-27 125.9 69 85.5
MELO3C016948.2 Cucumis melo HOM05D004383 ORTHO05D005050 2.5e-27 125.2 69 85.5
TWI32G1179 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 2.5e-27 125.2 69 84.1
AUR62024788 Chenopodium quinoa HOM05D004383 ORTHO05D005050 3.2e-27 124.8 67 83.6
AUR62032433 Chenopodium quinoa HOM05D004383 ORTHO05D005050 3.2e-27 124.8 67 83.6
CsaV3_4G036420 Cucumis sativus L. HOM05D004383 ORTHO05D005050 3.2e-27 124.8 69 85.5
Eucgr.C04036 Eucalyptus grandis HOM05D004383 ORTHO05D005050 3.2e-27 124.8 69 85.5
Oeu010290.1 Olea europaea HOM05D004383 ORTHO05D005050 5.5e-27 124.0 70 78.6
Potri.018G016800 Populus trichocarpa HOM05D004383 ORTHO05D005050 5.5e-27 124.0 69 82.6
TWI34G1410 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 7.2e-27 123.6 69 85.5
Potri.006G266300 Populus trichocarpa HOM05D004383 ORTHO05D005050 9.4e-27 123.2 67 85.1
ClCG05G016150 Citrullus lanatus HOM05D004383 ORTHO05D005050 1.2e-26 122.9 69 84.1
MSTRG.13961 Avicennia marina HOM05D004383 ORTHO05D005050 1.6e-26 122.5 69 81.2
Cc00_g24580 Coffea canephora HOM05D004383 ORTHO05D005050 1.6e-26 122.5 67 85.1
FAN14G2933 Fragaria x ananassa HOM05D004383 ORTHO05D005050 1.6e-26 122.5 67 85.1
ATR0580G398 Amborella trichopoda HOM05D004383 ORTHO05D005050 2.1e-26 122.1 66 84.8
arahy.Tifrunner.gnm1.ann1.S5PPFL Arachis hypogaea HOM05D004383 ORTHO05D005050 2.1e-26 122.1 69 82.6
MD08G1052600 Malus domestica HOM05D004383 ORTHO05D005050 2.1e-26 122.1 65 87.7
Sed0009310 Sechium edule HOM05D004383 ORTHO05D005050 2.1e-26 122.1 69 84.1
Solyc08g006650.3 Solanum lycopersicum HOM05D004383 ORTHO05D005050 2.1e-26 122.1 64 89.1
Sopen08g002600 Solanum pennellii HOM05D004383 ORTHO05D005050 2.1e-26 122.1 64 89.1
PGSC0003DMG400026285 Solanum tuberosum HOM05D004383 ORTHO05D005050 2.1e-26 122.1 64 89.1
Actinidia14139 Actinidia chinensis HOM05D004383 ORTHO05D005050 2.7e-26 121.7 69 82.6
arahy.Tifrunner.gnm1.ann1.W5C21C Arachis hypogaea HOM05D004383 ORTHO05D005050 2.7e-26 121.7 69 82.6
CAN.G285.20 Capsicum annuum HOM05D004383 ORTHO05D005050 2.7e-26 121.7 64 87.5
Migut.E01443 Erythranthe guttata HOM05D004383 ORTHO05D005050 2.7e-26 121.7 69 81.2
CANSAT64G0435 Cannabis sativa HOM05D004383 ORTHO05D005050 3.6e-26 121.3 69 84.1
Peaxi162Scf00045g01943 Petunia axillaris HOM05D004383 ORTHO05D005050 3.6e-26 121.3 64 87.5
Nitab4.5_0000264g0060 Nicotiana tabacum HOM05D004383 ORTHO05D005050 4.7e-26 120.9 64 89.1
Psat6g025120 Pisum sativum HOM05D004383 ORTHO05D005050 6.1e-26 120.6 65 84.6
Hund25610 Selenicereus undatus HOM05D004383 ORTHO05D005050 6.1e-26 120.6 69 79.7
TPR.G38877 Trifolium pratense HOM05D004383 ORTHO05D005050 6.1e-26 120.6 65 84.6
Lj6g0009294 Lotus japonicus HOM05D004383 ORTHO05D005050 8.0e-26 120.2 69 78.3
SGA_v2.0_scaffold169G38599 Striga asiatica HOM05D004383 ORTHO05D005050 1.0e-25 119.8 67 80.6
Glyma.14G103800 Glycine max HOM05D004383 ORTHO05D005050 1.4e-25 119.4 67 82.1
Glyma.17G222100 Glycine max HOM05D004383 ORTHO05D005050 1.4e-25 119.4 67 82.1
Phvul.001G042400 Phaseolus vulgaris HOM05D004383 ORTHO05D005050 1.4e-25 119.4 67 82.1
SGA_v2.0_scaffold4G02162 Striga asiatica HOM05D004383 ORTHO05D005050 1.4e-25 119.4 67 80.6
VMungo0647G1739 Vigna mungo HOM05D004383 ORTHO05D005050 1.4e-25 119.4 67 82.1
CiPaw.07G231900 Carya illinoinensis HOM05D004383 ORTHO05D005050 1.8e-25 119.0 69 82.6
ECA238G1890 Erigeron canadensis HOM05D004383 ORTHO05D005050 4.0e-25 117.9 69 78.3
Lalb_Chr24g0401921 Lupinus albus HOM05D004383 ORTHO05D005050 4.0e-25 117.9 67 80.6
MBI14_g31383_MAGBIO Magnolia biondii HOM05D004383 ORTHO05D005050 5.2e-25 117.5 66 84.8
Medtr1g013660 Medicago truncatula HOM05D004383 ORTHO05D005050 5.2e-25 117.5 65 81.5
ECA233G1452 Erigeron canadensis HOM05D004383 ORTHO05D005050 6.7e-25 117.1 69 79.7
HanXRQChr12g0370101 Helianthus annuus HOM05D004383 ORTHO05D005050 6.7e-25 117.1 69 79.7
Zm00001eb394360 Zea mays HOM05D004383 ORTHO05D005050 6.7e-25 117.1 67 77.6
EL10Ac2g02480 Beta vulgaris HOM05D004383 ORTHO05D005050 8.8e-25 116.7 64 81.2
HanXRQChr07g0201211 Helianthus annuus HOM05D004383 ORTHO05D005050 8.8e-25 116.7 67 80.6
Os03g0360500 Oryza sativa ssp. japonica HOM05D004383 ORTHO05D005050 8.8e-25 116.7 69 76.8
Ca_13075_v3 Cicer arietinum L. HOM05D004383 ORTHO05D005050 1.5e-24 115.9 65 81.5
Ah.12g060630 Amaranthus hybridus HOM05D004383 ORTHO05D005050 2.0e-24 115.5 63 84.1
Aqoxy7G03322 Aquilegia oxysepala HOM05D004383 ORTHO05D005050 2.0e-24 115.5 67 83.6
CARHR202520 Cardamine hirsuta HOM05D004383 ORTHO05D005050 7.5e-24 113.6 64 79.7
THA.LOC104799028 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 7.5e-24 113.6 65 78.5
THA.LOC104824960 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 7.5e-24 113.6 65 78.5
Thhalv10014802m.g Eutrema salsugineum HOM05D004383 ORTHO05D005050 1.3e-23 112.8 64 79.7
Lsat_1_v5_gn_8_16540 Lactuca sativa HOM05D004383 ORTHO05D005050 1.3e-23 112.8 63 84.1
AL6G21360 Arabidopsis lyrata HOM05D004383 ORTHO05D005050 2.2e-23 112.1 64 79.7
AT5G10780 Arabidopsis thaliana HOM05D004383 ORTHO05D005050 2.2e-23 112.1 64 79.7
BcaB01g05499 Brassica carinata HOM05D004383 ORTHO05D005050 2.2e-23 112.1 64 79.7
C03p05470 Brassica napus HOM05D004383 ORTHO05D005050 2.2e-23 112.1 64 79.7
Carub.0006s0928 Capsella rubella HOM05D004383 ORTHO05D005050 2.2e-23 112.1 64 79.7
BcaB01g06278 Brassica carinata HOM05D004383 ORTHO05D005050 2.8e-23 111.7 64 78.1
BcaC03g13332 Brassica carinata HOM05D004383 ORTHO05D005050 2.8e-23 111.7 64 78.1
A02p00660 Brassica napus HOM05D004383 ORTHO05D005050 2.8e-23 111.7 64 78.1
A03p04760 Brassica napus HOM05D004383 ORTHO05D005050 2.8e-23 111.7 64 78.1
C02p04660 Brassica napus HOM05D004383 ORTHO05D005050 2.8e-23 111.7 64 78.1
BraA02t05050Z Brassica rapa HOM05D004383 ORTHO05D005050 2.8e-23 111.7 64 78.1
Sp6g32680 Schrenkiella parvula HOM05D004383 ORTHO05D005050 2.8e-23 111.7 64 78.1
SEGI_36915 Sequoiadendron giganteum HOM05D004383 ORTHO05D005050 2.8e-23 111.7 66 71.2
BcaB05g21506 Brassica carinata HOM05D004383 ORTHO05D005050 3.7e-23 111.3 64 76.6
BcaNung06638 Brassica carinata HOM05D004383 ORTHO05D005050 3.7e-23 111.3 63 81.0
AagrBONN_evm.TU.Sc2ySwM_368.2778 Anthoceros agrestis HOM05D004383 ORTHO05D005050 4.8e-23 110.9 67 74.6
Migut.A00383 Erythranthe guttata HOM05D004383 ORTHO05D005050 4.8e-23 110.9 66 77.3
Aa31LG3G16320 Aethionema arabicum HOM05D004383 ORTHO05D005050 8.3e-23 110.2 65 75.4
Mapoly0039s0015 Marchantia polymorpha HOM05D004383 ORTHO05D005050 1.1e-22 109.8 70 70.0
BraA03t09816Z Brassica rapa HOM05D004383 ORTHO05D005050 2.4e-22 108.6 64 76.6
Haze_21384 Corylus avellana HOM05D004383 ORTHO05D005050 3.1e-22 108.2 62 83.9
Cpa.g.sc148.37 Carica papaya HOM05D004383 ORTHO05D005050 7.0e-22 107.1 65 81.5
CSS0025027 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 9.1e-22 106.7 58 86.2
FAN02G2967 Fragaria x ananassa HOM05D004383 ORTHO05D005050 1.2e-21 106.3 56 89.3
QL02p018464 Quercus lobata HOM05D004383 ORTHO05D005050 1.2e-21 106.3 56 89.3
CSS0013447 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 1.6e-21 105.9 57 86.0
Ciclev10009603m.g Citrus clementina HOM05D004383 ORTHO05D005050 1.6e-21 105.9 55 90.9
Nitab4.5_0001362g0040 Nicotiana tabacum HOM05D004383 ORTHO05D005050 2.7e-21 105.1 57 86.0
DCAR_003054 Daucus carota HOM05D004383 ORTHO05D005050 5.9e-21 104.0 56 87.5
vmacro11269 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 1.0e-20 103.2 60 80.0
SMO367G0045 Selaginella moellendorffii HOM05D004383 ORTHO05D005050 1.3e-20 102.8 65 72.3
Sabra06G0208900 Salix brachista HOM05D004383 ORTHO05D005050 1.7e-20 102.4 57 82.5
Sabra18G0020200 Salix brachista HOM05D004383 ORTHO05D005050 2.9e-20 101.7 58 79.3
HPP92_021971 Vanilla planifolia HOM05D004383 ORTHO05D005050 5.0e-20 100.9 55 85.5
Oeu021906.1 Olea europaea HOM05D004383 ORTHO05D005050 1.9e-19 99.0 56 82.1
unitig_32.g11121 Utricularia gibba HOM05D004383 ORTHO05D005050 1.9e-19 99.0 56 82.1
vmacro05117 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 3.2e-19 98.2 56 83.9
DCAR_030622 Daucus carota HOM05D001936 ORTHO05D005050 5.5e-19 97.4 57 82.5
BolC3t13057H Brassica oleracea HOM05D004383 ORTHO05D005050 7.2e-19 97.1 56 78.6
BolC2t06425H Brassica oleracea HOM05D004383 ORTHO05D003478 9.4e-19 96.7 56 76.8
Pp3c18_15950 Physcomitrium patens HOM05D004383 ORTHO05D005050 2.1e-18 95.5 64 65.6
SalBow8G1520 Salvia bowleyana HOM05D004383 ORTHO05D005050 2.1e-18 95.5 56 76.8
MCO09G762 Micromonas commoda HOM05D004383 ORTHO05D005050 1.3e-15 86.3 67 55.2
CBR_g29297 Chara braunii HOM05D004383 ORTHO05D005050 1.1e-14 83.2 64 59.4
Actinidia10531 Actinidia chinensis HOM05D004383 ORTHO05D005050 1.6e-13 79.3 37 94.6
PRCOL_00000905 Prasinoderma coloniale HOM05D004383 ORTHO05D005050 1.0e-12 76.6 68 50.0
Dinv10290 Davidia involucrata HOM05D004383 ORTHO05D005050 1.4e-09 66.2 38 78.9
Sc23g0006160 Simmondsia chinensis HOM05D004383 ORTHO05D005050 2.0e-08 62.4 36 77.8
RcHm_v2.0_Chr3g0494951 Rosa chinensis HOM05D004383 ORTHO05D005050 1.3e-07 59.7 42 71.4


User provided reference genes

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