Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR383G0651 Trochodendron aralioides HOM05D005019 ORTHO05D006625 4.1e-179 631.3 328 100.0
TAR633G0331 Trochodendron aralioides HOM05D005019 ORTHO05D006625 1.6e-103 380.2 558 47.0
GSVIVG01003806001 Vitis vinifera HOM05D005019 ORTHO05D006625 1.8e-78 297.0 529 40.3
GSVIVG01000726001 Vitis vinifera HOM05D005019 ORTHO05D006625 3.1e-78 296.2 558 39.6
Dinv22477 Davidia involucrata HOM05D005019 ORTHO05D006625 1.7e-76 290.4 575 39.0
CSS0021329 Camellia sinensis var. sinensis HOM05D005019 ORTHO05D006625 3.2e-75 286.2 537 40.0
Cfa002330 Carpinus fangiana HOM05D005019 ORTHO05D006625 5.5e-75 285.4 575 37.6
Actinidia21157 Actinidia chinensis HOM05D005019 ORTHO05D006625 7.9e-74 281.6 574 37.3
Manes.16G024300 Manihot esculenta HOM05D005019 ORTHO05D006625 1.3e-73 280.8 572 38.1
Cc02_g22310 Coffea canephora HOM05D005019 ORTHO05D006625 7.4e-72 275.0 562 36.5
Lj1C59T1 Lonicera japonica HOM05D005019 ORTHO05D006625 1.6e-71 273.9 570 37.0
Prupe.8G231800 Prunus persica HOM05D005019 ORTHO05D006625 1.1e-70 271.2 570 37.0
Prupe.5G054300 Prunus persica HOM05D005019 ORTHO05D006625 3.4e-69 266.2 570 36.0
Dinv34572 Davidia involucrata HOM05D005019 ORTHO05D006625 7.6e-69 265.0 574 35.9
MBI12_g17287_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D006625 1.0e-68 264.6 538 37.2
PSO210G0391 Papaver somniferum HOM05D005019 ORTHO05D006625 1.0e-68 264.6 560 36.1
Haze_24536 Corylus avellana HOM05D005019 ORTHO05D006625 1.3e-68 264.2 551 37.0
CiPaw.03G257900 Carya illinoinensis HOM05D005019 ORTHO05D006625 1.9e-67 260.4 575 35.3
QL02p075842 Quercus lobata HOM05D005019 ORTHO05D006625 3.2e-67 259.6 408 44.1
FAN20G1740 Fragaria x ananassa HOM05D005019 ORTHO05D006625 1.2e-66 257.7 569 35.3
FAN27G0650 Fragaria x ananassa HOM05D005019 ORTHO05D006625 2.1e-66 256.9 569 35.1
FvH4_5g20520 Fragaria vesca HOM05D005019 ORTHO05D006625 2.7e-66 256.5 570 35.3
Ciclev10019516m.g Citrus clementina HOM05D005019 ORTHO05D006625 6.1e-66 255.4 574 35.4
FAN18G2643 Fragaria x ananassa HOM05D005019 ORTHO05D006625 7.9e-66 255.0 570 35.3
RcHm_v2.0_Chr6g0289431 Rosa chinensis HOM05D005019 ORTHO05D006625 7.9e-66 255.0 571 35.4
TWI31G0602 Tripterygium wilfordii HOM05D005019 ORTHO05D006625 1.0e-65 254.6 570 35.1
PSO210G5187 Papaver somniferum HOM05D005019 ORTHO05D006625 3.0e-65 253.1 560 35.2
Nn7g37931 Nelumbo nucifera HOM05D005019 ORTHO05D006625 3.9e-65 252.7 561 36.0
FAN04G2884 Fragaria x ananassa HOM05D005019 ORTHO05D006625 8.7e-65 251.5 565 35.0
Ca_00175_v3 Cicer arietinum L. HOM05D005019 ORTHO05D006625 4.3e-64 249.2 576 35.8
FAN24G1214 Fragaria x ananassa HOM05D005019 ORTHO05D006625 5.7e-64 248.8 566 35.5
Rhsim07G0080400 Rhododendron simsii HOM05D005019 ORTHO05D006625 6.3e-63 245.4 575 35.0
FAN15G0975 Fragaria x ananassa HOM05D005019 ORTHO05D006625 8.2e-63 245.0 565 34.7
Lalb_Chr19g0134621 Lupinus albus HOM05D005019 ORTHO05D006625 8.2e-63 245.0 561 35.8
Glyma.13G255400 Glycine max HOM05D005019 ORTHO05D006625 1.4e-62 244.2 576 34.9
FvH4_2g22480 Fragaria vesca HOM05D005019 ORTHO05D006625 2.4e-62 243.4 552 35.7
Potri.005G218600 Populus trichocarpa HOM05D005019 ORTHO05D006625 4.1e-62 242.7 600 34.7
MD10G1192400 Malus domestica HOM05D005019 ORTHO05D006625 6.9e-62 241.9 573 34.9
Lalb_Chr03g0030271 Lupinus albus HOM05D005019 ORTHO05D006625 2.0e-61 240.4 559 36.1
MD05G1205400 Malus domestica HOM05D005019 ORTHO05D006625 3.4e-61 239.6 571 34.3
Thecc.01G159500 Theobroma cacao HOM05D005019 ORTHO05D006625 5.9e-61 238.8 567 34.7
Psat1g214520 Pisum sativum HOM05D005019 ORTHO05D006625 1.0e-60 238.0 573 35.1
PGR044G0331 Punica granatum HOM05D005019 ORTHO05D006625 1.0e-60 238.0 566 35.2
CANSAT35G0193 Cannabis sativa HOM05D005019 ORTHO05D006625 5.0e-60 235.7 577 34.0
Glyma.15G059400 Glycine max HOM05D005019 ORTHO05D006625 5.0e-60 235.7 576 33.9
vmacro14869 Vaccinium macrocarpon HOM05D005019 ORTHO05D006625 5.0e-60 235.7 539 35.4
ECA247G2036 Erigeron canadensis HOM05D005019 ORTHO05D006625 8.5e-60 235.0 553 34.4
MSTRG.12540 Avicennia marina HOM05D005019 ORTHO05D006625 1.1e-59 234.6 571 34.0
Eucgr.K03309 Eucalyptus grandis HOM05D005019 ORTHO05D006625 1.1e-59 234.6 573 34.6
Psat1g046760 Pisum sativum HOM05D005019 ORTHO05D006625 2.5e-59 233.4 572 33.7
Duzib147G1145 Durio zibethinus HOM05D005019 ORTHO05D006625 3.2e-59 233.0 568 34.2
Lj1P543T22 Lonicera japonica HOM05D005019 ORTHO05D006625 3.2e-59 233.0 487 35.5
VMungo0540G2473 Vigna mungo HOM05D005019 ORTHO05D006625 5.5e-59 232.3 577 33.8
CSS0011909 Camellia sinensis var. sinensis HOM05D005019 ORTHO05D006625 2.7e-58 229.9 349 47.3
Lj1g0019097 Lotus japonicus HOM05D005019 ORTHO05D006625 3.6e-58 229.6 577 34.3
Sc04g0003030 Simmondsia chinensis HOM05D005019 ORTHO05D006625 6.1e-58 228.8 570 32.5
Migut.N02183 Erythranthe guttata HOM05D005019 ORTHO05D006625 1.0e-57 228.0 570 33.2
Phvul.006G200700 Phaseolus vulgaris HOM05D005019 ORTHO05D006625 1.0e-57 228.0 577 33.4
Nitab4.5_0010414g0010 Nicotiana tabacum HOM05D005019 ORTHO05D006625 1.4e-57 227.6 505 35.0
Medtr2g009800 Medicago truncatula HOM05D005019 ORTHO05D006625 1.8e-57 227.3 575 33.0
Lsat_1_v5_gn_8_3120 Lactuca sativa HOM05D005019 ORTHO05D006625 2.3e-57 226.9 553 34.0
Atru.chr5.1578 Acer truncatum HOM05D005019 ORTHO05D006625 2.0e-56 223.8 575 33.4
Gohir.A05G401500 Gossypium hirsutum HOM05D005019 ORTHO05D006625 2.6e-56 223.4 546 34.2
Aqoxy6G01670 Aquilegia oxysepala HOM05D005019 ORTHO05D006625 4.4e-56 222.6 577 33.8
Gohir.D11G348100 Gossypium hirsutum HOM05D005019 ORTHO05D006625 4.4e-56 222.6 568 34.2
Gorai.007G378500 Gossypium raimondii HOM05D005019 ORTHO05D006625 4.4e-56 222.6 568 34.2
Nitab4.5_0008299g0020 Nicotiana tabacum HOM05D005019 ORTHO05D006625 5.7e-56 222.2 505 34.5
TPR.G9511 Trifolium pratense HOM05D005019 ORTHO05D006625 5.7e-56 222.2 574 34.1
ClCG02G012250 Citrullus lanatus HOM05D005019 ORTHO05D006625 1.3e-55 221.1 574 32.2
Gohir.D04G014300 Gossypium hirsutum HOM05D005019 ORTHO05D006625 1.7e-55 220.7 564 33.5
Nitab4.5_0001370g0040 Nicotiana tabacum HOM05D005019 ORTHO05D006625 1.7e-55 220.7 503 34.8
PGSC0003DMG400023686 Solanum tuberosum HOM05D005019 ORTHO05D006625 1.7e-55 220.7 571 32.7
HanXRQChr14g0454081 Helianthus annuus HOM05D005019 ORTHO05D006625 6.3e-55 218.8 559 33.1
Lsat_1_v5_gn_9_9921 Lactuca sativa HOM05D005019 ORTHO05D006625 1.1e-54 218.0 561 32.8
Medtr2g101620 Medicago truncatula HOM05D005019 ORTHO05D006625 1.1e-54 218.0 575 32.5
Nitab4.5_0003006g0020 Nicotiana tabacum HOM05D005019 ORTHO05D006625 1.1e-54 218.0 508 35.0
CsaV3_2G016400 Cucumis sativus L. HOM05D005019 ORTHO05D006625 1.8e-54 217.2 572 32.2
Gorai.012G016900 Gossypium raimondii HOM05D005019 ORTHO05D006625 1.8e-54 217.2 564 33.3
Gohir.A11G329100 Gossypium hirsutum HOM05D005019 ORTHO05D006625 2.4e-54 216.9 566 32.9
SalBow3G3235 Salvia bowleyana HOM05D005019 ORTHO05D006625 2.4e-54 216.9 580 32.9
Aqoxy5G00344 Aquilegia oxysepala HOM05D005019 ORTHO05D006625 5.3e-54 215.7 580 33.1
Oeu018172.1 Olea europaea HOM05D005019 ORTHO05D006625 5.3e-54 215.7 577 31.4
DCAR_002684 Daucus carota HOM05D005019 ORTHO05D006625 6.9e-54 215.3 575 32.0
SalBow6G4122 Salvia bowleyana HOM05D005019 ORTHO05D006625 1.5e-53 214.2 540 32.8
Lj6g0023367 Lotus japonicus HOM05D005019 ORTHO05D006625 3.4e-53 213.0 568 32.9
Peaxi162Scf00045g00177 Petunia axillaris HOM05D005019 ORTHO05D006625 4.5e-53 212.6 573 32.1
MELO3C020849.2 Cucumis melo HOM05D005019 ORTHO05D006625 7.7e-53 211.8 575 31.3
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 1.0e-52 211.5 577 34.1
EL10Ac5g11096 Beta vulgaris HOM05D005019 ORTHO05D006625 1.3e-52 211.1 580 33.1
arahy.Tifrunner.gnm1.ann1.TZR8AU Arachis hypogaea HOM05D005019 ORTHO05D006625 3.8e-52 209.5 567 33.0
Sopen10g030790 Solanum pennellii HOM05D005019 ORTHO05D006625 1.1e-51 208.0 510 32.5
Solyc10g080180.3 Solanum lycopersicum HOM05D005019 ORTHO05D006625 1.9e-51 207.2 502 32.9
Ah.02g113910 Amaranthus hybridus HOM05D005019 ORTHO05D006625 7.2e-51 205.3 583 31.0
Thhalv10013183m.g Eutrema salsugineum HOM05D005019 ORTHO05D006625 1.6e-50 204.1 561 31.7
AUR62008493 Chenopodium quinoa HOM05D005019 ORTHO05D006625 2.1e-50 203.8 578 32.4
Cpa.g.sc200.5 Carica papaya HOM05D005019 ORTHO05D006625 4.7e-50 202.6 570 31.4
Hma1.2p1_1029F.1_g249600 Hydrangea macrophylla HOM05D005019 ORTHO05D006625 7.9e-50 201.8 356 39.3
Thecc.05G016300 Theobroma cacao HOM05D005019 ORTHO05D006625 3.0e-49 199.9 342 38.9
Hund02608 Selenicereus undatus HOM05D005019 ORTHO05D006625 3.9e-49 199.5 550 32.0
CARHR199310 Cardamine hirsuta HOM05D005019 ORTHO05D006625 1.1e-48 198.0 559 30.6
AUR62037688 Chenopodium quinoa HOM05D005019 ORTHO05D006625 5.7e-48 195.7 576 32.5
ATR0564G197 Amborella trichopoda HOM05D005019 ORTHO05D006625 9.7e-48 194.9 570 30.2
AT5G14050 Arabidopsis thaliana HOM05D005019 ORTHO05D006625 1.7e-47 194.1 560 31.6
RcHm_v2.0_Chr7g0205871 Rosa chinensis HOM05D005019 ORTHO05D006625 1.7e-47 194.1 363 37.2
Carub.0006s1224 Capsella rubella HOM05D005019 ORTHO05D006625 4.8e-47 192.6 570 31.1
AUR62021601 Chenopodium quinoa HOM05D005019 ORTHO05D006625 8.2e-47 191.8 540 31.3
Ciclev10006829m.g Citrus clementina HOM05D005019 ORTHO05D006625 8.2e-47 191.8 465 33.5
Aa31LG11G14850 Aethionema arabicum HOM05D005019 ORTHO05D006625 1.1e-46 191.4 559 30.2
Sp6g29950 Schrenkiella parvula HOM05D005019 ORTHO05D006625 2.4e-46 190.3 521 31.3
Sed0015889 Sechium edule HOM05D005019 ORTHO05D006625 3.1e-46 189.9 581 30.3
HPP92_026109 Vanilla planifolia HOM05D005019 ORTHO05D006625 1.6e-45 187.6 568 30.1
AL6G24710 Arabidopsis lyrata HOM05D005019 ORTHO05D006625 2.6e-45 186.8 507 31.2
SHI13722 Sapria himalayana HOM05D005019 ORTHO05D006625 2.6e-45 186.8 493 31.2
SGA_v2.0_scaffold80G25914 Striga asiatica HOM05D005019 ORTHO05D006625 2.6e-45 186.8 517 31.5
Rhsim01G0269300 Rhododendron simsii HOM05D005019 ORTHO05D006625 7.7e-45 185.3 123 74.8
AUR62008687 Chenopodium quinoa HOM05D005019 ORTHO05D006625 1.0e-44 184.9 430 34.4
THA.LOC104806394 Tarenaya hassleriana HOM05D005019 ORTHO05D006625 1.0e-44 184.9 566 30.2
ClCG07G000610 Citrullus lanatus HOM05D005019 ORTHO05D006625 9.4e-43 178.3 564 29.4
CDE04G3201 Ceratophyllum demersum HOM05D005019 ORTHO05D006625 4.0e-41 172.9 123 69.9
Zm00001eb227850 Zea mays HOM05D005019 ORTHO05D006625 4.0e-41 172.9 571 29.1
Os07g0603200 Oryza sativa ssp. japonica HOM05D005019 ORTHO05D006625 1.1e-38 164.9 560 28.8
HPP92_022900 Vanilla planifolia HOM05D005019 ORTHO05D006625 1.1e-38 164.9 353 32.6
AUR62025557 Chenopodium quinoa HOM05D005019 ORTHO05D006625 3.1e-38 163.3 349 33.8
unitig_8.g4702 Utricularia gibba HOM05D005019 ORTHO05D006625 2.9e-36 156.8 575 27.1
MBI17_g13392_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D012924 1.9e-35 154.1 119 66.4
SEGI_19346 Sequoiadendron giganteum HOM05D005019 ORTHO05D006625 5.2e-33 146.0 139 57.6
Actinidia24938 Actinidia chinensis HOM05D005019 ORTHO05D006625 6.8e-33 145.6 380 34.2
Mapoly0051s0055 Marchantia polymorpha HOM05D005019 ORTHO05D006625 5.7e-32 142.5 122 57.4
AagrBONN_evm.TU.Sc2ySwM_362.2571 Anthoceros agrestis HOM05D005019 ORTHO05D006625 1.4e-30 137.9 122 55.7
Pp3c26_4890 Physcomitrium patens HOM05D005019 ORTHO05D006625 2.5e-27 127.1 139 48.9
CBR_g21842 Chara braunii HOM05D005019 ORTHO05D006625 1.6e-26 124.4 123 50.4
SMO356G0724 Selaginella moellendorffii HOM05D005019 ORTHO05D006625 4.9e-23 112.8 118 49.2
Cre06.g255950 Chlamydomonas reinhardtii HOM05D005019 ORTHO05D006625 1.1e-19 101.7 137 42.3
PRCOL_00000196 Prasinoderma coloniale HOM05D005019 ORTHO05D006625 3.4e-16 90.1 126 40.5
MBI17_g40264_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D006625 8.3e-15 85.5 47 83.0
CDE02G2819 Ceratophyllum demersum HOM05D005019 ORTHO05D006625 9.2e-14 82.0 302 29.1
MD05G1205300 Malus domestica HOM05D005019 ORTHO05D048639 2.5e-11 73.9 55 65.5
MCO01G264 Micromonas commoda HOM05D005019 ORTHO05D006625 6.2e-10 69.3 144 33.3
BcaNung06034 Brassica carinata HOM05D005019 ORTHO05D006625 4.9e-07 59.7 46 65.2
Cfa024923 Carpinus fangiana HOM05D005019 ORTHO05D126389 4.9e-07 59.7 80 37.5
HPP92_022901 Vanilla planifolia HOM05D005019 ORTHO05D430169 1.4e-06 58.2 99 43.4
RcHm_v2.0_Chr7g0205881 Rosa chinensis HOM05D005019 ORTHO05D347162 3.2e-06 57.0 78 46.2
AagrBONN_evm.TU.Sc2ySwM_228.5554 Anthoceros agrestis HOM05D005019 ORTHO05D006625 4.1e-06 56.6 46 54.3


User provided reference genes

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