Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR383G0639 Trochodendron aralioides HOM05D000536 ORTHO05D001213 1.4e-87 326.2 166 100.0
TAR625G1232 Trochodendron aralioides HOM05D000536 ORTHO05D001213 1.1e-44 183.7 127 74.8
TAR626G0923 Trochodendron aralioides HOM05D000536 ORTHO05D001213 2.4e-39 166.0 103 84.5
Nn8g39397 Nelumbo nucifera HOM05D000536 ORTHO05D001213 1.0e-32 144.1 134 59.0
CiPaw.03G242400 Carya illinoinensis HOM05D000536 ORTHO05D001213 4.9e-32 141.7 135 60.0
Nn2g11972 Nelumbo nucifera HOM05D000536 ORTHO05D001213 1.1e-31 140.6 133 61.7
Cfa003351 Carpinus fangiana HOM05D000536 ORTHO05D001213 2.5e-31 139.4 135 63.7
Dinv36543 Davidia involucrata HOM05D000536 ORTHO05D001213 1.3e-29 133.7 148 56.8
Aqoxy7G02114 Aquilegia oxysepala HOM05D000536 ORTHO05D001213 2.3e-29 132.9 129 58.9
GSVIVG01015506001 Vitis vinifera HOM05D000536 ORTHO05D001213 2.3e-29 132.9 128 60.2
QL02p087871 Quercus lobata HOM05D000536 ORTHO05D001213 8.7e-29 131.0 138 57.2
Rhsim01G0076200 Rhododendron simsii HOM05D000536 ORTHO05D001213 2.1e-27 126.3 151 54.3
Rhsim01G0076300 Rhododendron simsii HOM05D000536 ORTHO05D001213 3.7e-27 125.6 135 57.0
Haze_25610 Corylus avellana HOM05D000536 ORTHO05D001213 4.8e-27 125.2 126 61.1
Thecc.09G123600 Theobroma cacao HOM05D000536 ORTHO05D001213 1.1e-26 124.0 141 56.7
Cc06_g08740 Coffea canephora HOM05D000536 ORTHO05D001213 4.0e-26 122.1 145 52.4
Duzib168G1357 Durio zibethinus HOM05D000536 ORTHO05D001213 4.0e-26 122.1 147 55.8
vmacro20599 Vaccinium macrocarpon HOM05D000536 ORTHO05D001213 6.9e-26 121.3 142 53.5
FvH4_1g03560 Fragaria vesca HOM05D000536 ORTHO05D001213 9.0e-26 120.9 143 54.5
TWI34G0627 Tripterygium wilfordii HOM05D000536 ORTHO05D001213 1.5e-25 120.2 132 56.1
FAN19G2088 Fragaria x ananassa HOM05D000536 ORTHO05D001213 2.0e-25 119.8 141 53.9
Peaxi162Scf00984g00117 Petunia axillaris HOM05D000536 ORTHO05D001213 2.0e-25 119.8 156 48.1
Prupe.7G240100 Prunus persica HOM05D000536 ORTHO05D001213 2.0e-25 119.8 142 53.5
FAN26G0898 Fragaria x ananassa HOM05D000536 ORTHO05D001213 2.6e-25 119.4 143 53.8
FAN28G0052 Fragaria x ananassa HOM05D000536 ORTHO05D001213 3.4e-25 119.0 143 53.8
Duzib150G1540 Durio zibethinus HOM05D000536 ORTHO05D001213 4.5e-25 118.6 142 54.9
Manes.14G130800 Manihot esculenta HOM05D000536 ORTHO05D001213 5.8e-25 118.2 133 54.1
FAN23G0966 Fragaria x ananassa HOM05D000536 ORTHO05D001213 1.0e-24 117.5 143 53.1
Gohir.A05G017500 Gossypium hirsutum HOM05D000536 ORTHO05D001213 2.9e-24 115.9 115 59.1
Gohir.D05G018400 Gossypium hirsutum HOM05D000536 ORTHO05D001213 2.9e-24 115.9 115 59.1
CSS0043910 Camellia sinensis var. sinensis HOM05D000536 ORTHO05D001213 3.8e-24 115.5 160 50.0
CSS0018342 Camellia sinensis var. sinensis HOM05D000536 ORTHO05D001213 5.0e-24 115.2 160 50.0
Eucgr.C04183 Eucalyptus grandis HOM05D000536 ORTHO05D001213 6.5e-24 114.8 63 88.9
RcHm_v2.0_Chr2g0089081 Rosa chinensis HOM05D000536 ORTHO05D001213 1.1e-23 114.0 138 52.9
COL.COLO4_05775 Corchorus olitorius HOM05D000536 ORTHO05D001213 5.5e-23 111.7 65 83.1
Gorai.009G018800 Gossypium raimondii HOM05D000536 ORTHO05D001213 5.5e-23 111.7 115 57.4
Hma1.2p1_0018F.1_g012620 Hydrangea macrophylla HOM05D000536 ORTHO05D001213 7.1e-23 111.3 63 85.7
Nitab4.5_0007260g0010 Nicotiana tabacum HOM05D000536 ORTHO05D001213 7.1e-23 111.3 159 45.9
Sed0016505 Sechium edule HOM05D000536 ORTHO05D001213 9.3e-23 110.9 141 48.2
MBI04_g07633_MAGBIO Magnolia biondii HOM05D000536 ORTHO05D001213 1.2e-22 110.5 126 52.4
Atru.chr7.1210 Acer truncatum HOM05D000536 ORTHO05D001213 2.1e-22 109.8 131 55.0
MD02G1034900 Malus domestica HOM05D000536 ORTHO05D001213 2.7e-22 109.4 61 90.2
MD00G1106900 Malus domestica HOM05D000536 ORTHO05D001213 4.6e-22 108.6 61 88.5
Nitab4.5_0003558g0010 Nicotiana tabacum HOM05D000536 ORTHO05D001213 6.1e-22 108.2 161 45.3
PGR102G3259 Punica granatum HOM05D000536 ORTHO05D001213 6.1e-22 108.2 125 52.8
Sed0020428 Sechium edule HOM05D000536 ORTHO05D001213 1.0e-21 107.5 132 51.5
Hma1.2p1_0665F.1_g199100 Hydrangea macrophylla HOM05D000536 ORTHO05D001213 1.3e-21 107.1 61 88.5
Lj7A631G23 Lonicera japonica HOM05D000536 ORTHO05D001213 1.8e-21 106.7 141 51.8
Sopen12g002580 Solanum pennellii HOM05D000536 ORTHO05D001213 1.8e-21 106.7 165 42.4
Solyc12g006630.2 Solanum lycopersicum HOM05D000536 ORTHO05D001213 2.3e-21 106.3 165 42.4
MELO3C004518.2 Cucumis melo HOM05D000536 ORTHO05D001213 8.7e-21 104.4 141 50.4
CANSAT11G2354 Cannabis sativa HOM05D000536 ORTHO05D001213 2.5e-20 102.8 160 45.0
Cpa.g.sc75.54 Carica papaya HOM05D000536 ORTHO05D001213 2.5e-20 102.8 78 70.5
PGSC0003DMG400020679 Solanum tuberosum HOM05D000536 ORTHO05D001213 2.5e-20 102.8 172 40.7
ClCG11G002920 Citrullus lanatus HOM05D000536 ORTHO05D001213 5.7e-20 101.7 63 82.5
CSS0008171 Camellia sinensis var. sinensis HOM05D000536 ORTHO05D001213 7.4e-20 101.3 142 51.4
CAN.G377.8 Capsicum annuum HOM05D000536 ORTHO05D001213 9.7e-20 100.9 60 81.7
CsaV3_2G002750 Cucumis sativus L. HOM05D000536 ORTHO05D001213 9.7e-20 100.9 147 46.3
Ciclev10009401m.g Citrus clementina HOM05D000536 ORTHO05D001213 1.6e-19 100.1 87 63.2
ATR1156G077 Amborella trichopoda HOM05D000536 ORTHO05D001213 6.3e-19 98.2 104 52.9
Oeu034111.1 Olea europaea HOM05D000536 ORTHO05D001213 4.1e-18 95.5 124 49.2
SalBow1G6056 Salvia bowleyana HOM05D000536 ORTHO05D001213 2.0e-17 93.2 102 55.9
Psat4g040840 Pisum sativum HOM05D000536 ORTHO05D001213 2.6e-17 92.8 64 75.0
TPR.G10718 Trifolium pratense HOM05D000536 ORTHO05D001213 4.5e-17 92.0 64 73.4
Migut.K00474 Erythranthe guttata HOM05D000536 ORTHO05D001213 1.0e-16 90.9 64 75.0
Glyma.13G168300 Glycine max HOM05D000536 ORTHO05D001213 1.7e-16 90.1 80 61.2
Lalb_Chr07g0178841 Lupinus albus HOM05D000536 ORTHO05D001213 3.8e-16 89.0 185 37.8
Lalb_Chr12g0197831 Lupinus albus HOM05D000536 ORTHO05D001213 8.5e-16 87.8 80 58.8
Thhalv10014655m.g Eutrema salsugineum HOM05D000536 ORTHO05D001213 1.1e-15 87.4 84 58.3
Aa31sc461G10 Aethionema arabicum HOM05D000536 ORTHO05D001213 1.4e-15 87.0 85 57.6
Lj4g0020082 Lotus japonicus HOM05D000536 ORTHO05D001213 1.9e-15 86.7 49 83.7
THA.LOC104815103 Tarenaya hassleriana HOM05D000536 ORTHO05D001213 1.9e-15 86.7 61 70.5
Carub.0006s1849 Capsella rubella HOM05D000536 ORTHO05D001213 2.5e-15 86.3 67 65.7
CARHR192720 Cardamine hirsuta HOM05D000536 ORTHO05D001213 2.5e-15 86.3 88 55.7
AL6G31660 Arabidopsis lyrata HOM05D000536 ORTHO05D001213 4.2e-15 85.5 66 66.7
BcaC03g13731 Brassica carinata HOM05D003058 ORTHO05D003464 4.2e-15 85.5 66 66.7
BNapus_Darmor_BZH_scaffold_38p01800 Brassica napus HOM05D000536 ORTHO05D001213 4.2e-15 85.5 66 66.7
BolC2t07014H Brassica oleracea HOM05D000536 ORTHO05D001213 4.2e-15 85.5 66 66.7
BraA02t05555Z Brassica rapa HOM05D000536 ORTHO05D001213 4.2e-15 85.5 66 66.7
EL10Ac8g18621 Beta vulgaris HOM05D000536 ORTHO05D001213 7.2e-15 84.7 82 57.3
BcaB01g04803 Brassica carinata HOM05D000536 ORTHO05D001213 7.2e-15 84.7 66 65.2
A03p09830 Brassica napus HOM05D000536 ORTHO05D001213 7.2e-15 84.7 66 65.2
C03p11410 Brassica napus HOM05D000536 ORTHO05D001213 7.2e-15 84.7 66 65.2
BolC3t13615H Brassica oleracea HOM05D000536 ORTHO05D001213 7.2e-15 84.7 66 65.2
BraA03t10298Z Brassica rapa HOM05D000536 ORTHO05D001213 7.2e-15 84.7 66 65.2
Sp6g24300 Schrenkiella parvula HOM05D000536 ORTHO05D001213 7.2e-15 84.7 66 65.2
AT5G20110 Arabidopsis thaliana HOM05D000536 ORTHO05D001213 9.4e-15 84.3 66 65.2
Hund26491 Selenicereus undatus HOM05D000536 ORTHO05D001213 2.1e-14 83.2 88 52.3
AUR62033482 Chenopodium quinoa HOM05D000536 ORTHO05D001213 2.7e-14 82.8 141 41.1
arahy.Tifrunner.gnm1.ann1.VNPM5I Arachis hypogaea HOM05D000536 ORTHO05D001213 6.1e-14 81.6 179 35.8
arahy.Tifrunner.gnm1.ann1.62CDNH Arachis hypogaea HOM05D000536 ORTHO05D001213 7.9e-14 81.3 91 51.6
CDE04G2147 Ceratophyllum demersum HOM05D001564 ORTHO05D001439 7.9e-14 81.3 64 59.4
HanXRQChr06g0180261 Helianthus annuus HOM05D000536 ORTHO05D001213 1.8e-13 80.1 143 39.9
Medtr4g114060 Medicago truncatula HOM05D000536 ORTHO05D001213 1.8e-13 80.1 50 78.0
Glyma.17G116000 Glycine max HOM05D000536 ORTHO05D001213 2.3e-13 79.7 80 56.2
Lsat_1_v5_gn_8_58960 Lactuca sativa HOM05D000536 ORTHO05D001213 3.0e-13 79.3 157 38.2
DCAR_017824 Daucus carota HOM05D000536 ORTHO05D001213 1.1e-12 77.4 169 36.7
DCAR_017825 Daucus carota HOM05D000536 ORTHO05D001213 1.1e-12 77.4 169 36.7
ECA240G2050 Erigeron canadensis HOM05D000536 ORTHO05D001213 1.1e-12 77.4 80 56.2
PSO170G1145 Papaver somniferum HOM05D000536 ORTHO05D001213 1.1e-12 77.4 47 74.5
PSO455G0146 Papaver somniferum HOM05D000536 ORTHO05D001213 1.1e-12 77.4 47 74.5
Sc18g0000670 Simmondsia chinensis HOM05D000536 ORTHO05D001213 1.5e-12 77.0 63 61.9
Dinv41528 Davidia involucrata HOM05D000536 ORTHO05D029247 9.7e-12 74.3 39 92.3
AUR62011093 Chenopodium quinoa HOM05D000536 ORTHO05D001213 1.7e-11 73.6 50 70.0
Lsat_1_v5_gn_7_45721 Lactuca sativa HOM05D000536 ORTHO05D001213 2.2e-11 73.2 72 54.2
A02p06040 Brassica napus HOM05D000536 ORTHO05D001213 4.8e-11 72.0 43 76.7
Zm00001eb342300 Zea mays HOM05D000536 ORTHO05D001213 4.8e-11 72.0 106 39.6
HanXRQChr09g0242341 Helianthus annuus HOM05D000536 ORTHO05D001213 4.1e-10 68.9 72 52.8
MD14G1190400 Malus domestica HOM05D000536 ORTHO05D001213 1.5e-09 67.0 122 37.7
BcaB01g04806 Brassica carinata HOM05D000536 ORTHO05D001213 1.7e-08 63.5 34 85.3
HanXRQChr03g0062531 Helianthus annuus HOM05D000536 ORTHO05D001213 1.7e-08 63.5 68 55.9
Os01g0555600 Oryza sativa ssp. japonica HOM05D000536 ORTHO05D001213 5.0e-08 62.0 96 37.5
Hma1.2p1_0276F.1_g111550 Hydrangea macrophylla HOM05D000536 ORTHO05D029247 8.5e-08 61.2 45 68.9
Hma1.2p1_0406F.1_g146155 Hydrangea macrophylla HOM05D000536 ORTHO05D029247 8.5e-08 61.2 45 68.9
Hma1.2p1_1061F.1_g253335 Hydrangea macrophylla HOM05D000536 ORTHO05D029247 8.5e-08 61.2 45 68.9
SGA_v2.0_scaffold56G20077 Striga asiatica HOM05D000536 ORTHO05D001213 4.2e-07 58.9 141 33.3
QL10p014469 Quercus lobata HOM05D000536 ORTHO05D001213 7.2e-07 58.2 60 48.3
TWI60G1120 Tripterygium wilfordii HOM05D000536 ORTHO05D001213 9.4e-07 57.8 86 41.9
TAR371G0401 Trochodendron aralioides HOM05D000536 ORTHO05D001213 1.2e-06 57.4 60 45.0
ClCG06G016540 Citrullus lanatus HOM05D000536 ORTHO05D001213 1.6e-06 57.0 60 48.3
Ciclev10021550m.g Citrus clementina HOM05D000536 ORTHO05D001213 1.6e-06 57.0 60 48.3
Duzib084G0493 Durio zibethinus HOM05D000536 ORTHO05D001213 1.6e-06 57.0 60 46.7
Duzib205G1168 Durio zibethinus HOM05D000536 ORTHO05D001213 1.6e-06 57.0 60 46.7
Peaxi162Scf00689g00547 Petunia axillaris HOM05D000536 ORTHO05D001213 1.6e-06 57.0 60 50.0
PGR083G1234 Punica granatum HOM05D000536 ORTHO05D001213 1.6e-06 57.0 60 50.0
PGR083G1936 Punica granatum HOM05D000536 ORTHO05D001213 1.6e-06 57.0 60 50.0
CSS0038761 Camellia sinensis var. sinensis HOM05D000536 ORTHO05D001213 2.1e-06 56.6 60 48.3
Gohir.A12G174700 Gossypium hirsutum HOM05D000536 ORTHO05D001213 2.1e-06 56.6 60 46.7
Gohir.D12G177400 Gossypium hirsutum HOM05D000536 ORTHO05D001213 2.1e-06 56.6 60 46.7
Gorai.008G189800 Gossypium raimondii HOM05D000536 ORTHO05D001213 2.1e-06 56.6 60 46.7
Solyc06g071180.3 Solanum lycopersicum HOM05D000536 ORTHO05D001213 2.1e-06 56.6 94 41.5
Sopen06g027490 Solanum pennellii HOM05D000536 ORTHO05D001213 2.1e-06 56.6 93 40.9
vmacro16577 Vaccinium macrocarpon HOM05D000536 ORTHO05D001213 2.1e-06 56.6 60 46.7
Hma1.2p1_1617F.1_g293790 Hydrangea macrophylla HOM05D000536 ORTHO05D001213 2.7e-06 56.2 60 53.3
Thecc.K0000600 Theobroma cacao HOM05D000536 ORTHO05D001213 2.7e-06 56.2 60 46.7
CAN.G628.56 Capsicum annuum HOM05D000536 ORTHO05D001213 3.6e-06 55.8 63 47.6
COL.COLO4_21257 Corchorus olitorius HOM05D000536 ORTHO05D001213 3.6e-06 55.8 104 34.6
MD06G1184500 Malus domestica HOM05D000536 ORTHO05D001213 3.6e-06 55.8 126 31.7
SEGI_07176 Sequoiadendron giganteum HOM05D000536 ORTHO05D001213 3.6e-06 55.8 58 50.0
Sabra15G0092700 Salix brachista HOM05D000536 ORTHO05D001213 4.7e-06 55.5 60 46.7
PGSC0003DMG400033063 Solanum tuberosum HOM05D000536 ORTHO05D001213 4.7e-06 55.5 60 50.0
arahy.Tifrunner.gnm1.ann1.MWX564 Arachis hypogaea HOM05D000536 ORTHO05D001213 6.1e-06 55.1 53 52.8
arahy.Tifrunner.gnm1.ann1.YF22WB Arachis hypogaea HOM05D000536 ORTHO05D001213 6.1e-06 55.1 53 52.8
Atru.chr9.2361 Acer truncatum HOM05D000536 ORTHO05D001213 7.9e-06 54.7 60 45.0
MSTRG.11412 Avicennia marina HOM05D000536 ORTHO05D001213 7.9e-06 54.7 41 61.0
Phvul.003G195000 Phaseolus vulgaris HOM05D000536 ORTHO05D001213 7.9e-06 54.7 60 46.7


User provided reference genes

Program Settings