Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR383G0592 Trochodendron aralioides HOM05D008232 ORTHO05D010390 6.3e-57 223.8 105 100.0
Aqoxy7G03060 Aquilegia oxysepala HOM05D008232 ORTHO05D010390 6.8e-19 97.4 91 50.5
PGR031G2543 Punica granatum HOM05D008232 ORTHO05D010390 5.4e-16 87.8 96 43.8
Duzib235G0354 Durio zibethinus HOM05D008232 ORTHO05D010390 1.2e-15 86.7 95 42.1
Ciclev10026814m.g Citrus clementina HOM05D008232 ORTHO05D010390 1.6e-15 86.3 103 42.7
MBI14_g17362_MAGBIO Magnolia biondii HOM05D008232 ORTHO05D010390 2.0e-15 85.9 97 48.5
PSO478G5163 Papaver somniferum HOM05D008232 ORTHO05D010390 7.7e-15 84.0 104 46.2
Potri.010G248600 Populus trichocarpa HOM05D008232 ORTHO05D010390 2.2e-14 82.4 96 46.9
Thecc.06G043900 Theobroma cacao HOM05D000051 ORTHO05D000015 2.2e-14 82.4 95 40.0
TWI31G1109 Tripterygium wilfordii HOM05D008232 ORTHO05D010390 2.9e-14 82.0 97 46.4
Dinv23254 Davidia involucrata HOM05D008232 ORTHO05D010390 6.5e-14 80.9 99 42.4
CiPaw.03G112900 Carya illinoinensis HOM05D008232 ORTHO05D010390 1.1e-13 80.1 99 40.4
MD09G1231600 Malus domestica HOM05D008232 ORTHO05D010390 1.1e-13 80.1 96 39.6
PSO782G2603 Papaver somniferum HOM05D008232 ORTHO05D010390 1.1e-13 80.1 97 45.4
HanXRQChr09g0274311 Helianthus annuus HOM05D008232 ORTHO05D010390 1.9e-13 79.3 93 43.0
QL04p062033 Quercus lobata HOM05D008232 ORTHO05D010390 2.5e-13 79.0 95 41.1
Atru.chr1.2756 Acer truncatum HOM05D008232 ORTHO05D010390 3.2e-13 78.6 103 40.8
Solyc06g068660.3 Solanum lycopersicum HOM05D008232 ORTHO05D010390 3.2e-13 78.6 97 39.2
Sopen06g025940 Solanum pennellii HOM05D008232 ORTHO05D010390 3.2e-13 78.6 97 39.2
Peaxi162Scf00207g00211 Petunia axillaris HOM05D005461 ORTHO05D007157 5.5e-13 77.8 98 38.8
CsaV3_4G007020 Cucumis sativus L. HOM05D008232 ORTHO05D010390 9.5e-13 77.0 97 43.3
Eucgr.J03142 Eucalyptus grandis HOM05D008232 ORTHO05D010390 9.5e-13 77.0 99 40.4
Oeu036452.1 Olea europaea HOM05D008232 ORTHO05D010390 1.2e-12 76.6 95 40.0
MELO3C016243.2 Cucumis melo HOM05D008232 ORTHO05D010390 2.1e-12 75.9 97 41.2
Migut.I00645 Erythranthe guttata HOM05D008232 ORTHO05D010390 2.1e-12 75.9 96 39.6
FAN14G2943 Fragaria x ananassa HOM05D008232 ORTHO05D010390 8.0e-12 73.9 99 36.4
Prupe.3G107800 Prunus persica HOM05D008232 ORTHO05D010390 8.0e-12 73.9 99 37.4
Gohir.A05G117900 Gossypium hirsutum HOM05D008232 ORTHO05D010390 1.0e-11 73.6 93 40.9
Gohir.D05G118800 Gossypium hirsutum HOM05D008232 ORTHO05D010390 1.8e-11 72.8 94 41.5
Sed0014962 Sechium edule HOM05D008232 ORTHO05D010390 1.8e-11 72.8 97 41.2
Lsat_1_v5_gn_4_85220 Lactuca sativa HOM05D008232 ORTHO05D010390 2.3e-11 72.4 98 38.8
FAN05G2300 Fragaria x ananassa HOM05D008232 ORTHO05D010390 3.0e-11 72.0 99 36.4
Gorai.009G122800 Gossypium raimondii HOM05D008232 ORTHO05D010390 3.0e-11 72.0 94 43.6
FvH4_6g27930 Fragaria vesca HOM05D008232 ORTHO05D010390 4.0e-11 71.6 99 36.4
FAN02G3893 Fragaria x ananassa HOM05D008232 ORTHO05D010390 4.0e-11 71.6 99 36.4
Cpa.g.sc2471.1 Carica papaya HOM05D008232 ORTHO05D010390 5.2e-11 71.2 84 42.9
Lsat_1_v5_gn_5_114460 Lactuca sativa HOM05D006153 ORTHO05D007701 5.2e-11 71.2 81 42.0
Manes.06G016400 Manihot esculenta HOM05D008232 ORTHO05D010390 5.2e-11 71.2 102 40.2
Hund22378 Selenicereus undatus HOM05D008232 ORTHO05D010390 5.2e-11 71.2 109 36.7
ATR0030G019 Amborella trichopoda HOM05D006153 ORTHO05D007701 8.8e-11 70.5 52 55.8
CARHR066090 Cardamine hirsuta HOM05D008232 ORTHO05D010390 8.8e-11 70.5 101 38.6
Nitab4.5_0002017g0030 Nicotiana tabacum HOM05D006153 ORTHO05D007701 1.5e-10 69.7 55 50.9
Peaxi162Scf00003g00261 Petunia axillaris HOM05D006153 ORTHO05D007701 3.4e-10 68.6 75 45.3
AT1G73120 Arabidopsis thaliana HOM05D008232 ORTHO05D010390 4.4e-10 68.2 102 38.2
Hma1.2p1_1174F.1_g263880 Hydrangea macrophylla HOM05D006153 ORTHO05D007701 4.4e-10 68.2 53 52.8
Peaxi162Scf00152g00320 Petunia axillaris HOM05D006153 ORTHO05D007701 4.4e-10 68.2 74 41.9
SalBow7G0137 Salvia bowleyana HOM05D008232 ORTHO05D010390 4.4e-10 68.2 89 39.3
ECA234G3366 Erigeron canadensis HOM05D006153 ORTHO05D007701 5.7e-10 67.8 72 44.4
ECA234G4313 Erigeron canadensis HOM05D006153 ORTHO05D007701 7.5e-10 67.4 55 52.7
MELO3C018509.2 Cucumis melo HOM05D006153 ORTHO05D007701 9.8e-10 67.0 54 51.9
Thhalv10019346m.g Eutrema salsugineum HOM05D008232 ORTHO05D010390 9.8e-10 67.0 102 37.3
Nitab4.5_0004890g0010 Nicotiana tabacum HOM05D008232 ORTHO05D010390 9.8e-10 67.0 86 36.0
Sp5g28080 Schrenkiella parvula HOM05D008232 ORTHO05D010390 9.8e-10 67.0 102 37.3
Sed0025917 Sechium edule HOM05D006153 ORTHO05D007701 9.8e-10 67.0 68 45.6
THA.LOC104813941 Tarenaya hassleriana HOM05D008232 ORTHO05D010390 9.8e-10 67.0 95 37.9
Nitab4.5_0012681g0010 Nicotiana tabacum HOM05D006153 ORTHO05D007701 1.3e-09 66.6 67 46.3
arahy.Tifrunner.gnm1.ann1.EHR7LK Arachis hypogaea HOM05D006153 ORTHO05D007701 1.7e-09 66.2 47 51.1
HanXRQChr16g0514921 Helianthus annuus HOM05D006153 ORTHO05D007701 1.7e-09 66.2 52 53.8
Lj5g0024415 Lotus japonicus HOM05D006153 ORTHO05D007701 1.7e-09 66.2 54 51.9
AL2G32870 Arabidopsis lyrata HOM05D008232 ORTHO05D010390 2.2e-09 65.9 102 38.2
HanXRQChr16g0514461 Helianthus annuus HOM05D006153 ORTHO05D007701 2.2e-09 65.9 78 41.0
C02p30580 Brassica napus HOM05D008232 ORTHO05D010390 2.8e-09 65.5 104 34.6
CANSAT64G1479 Cannabis sativa HOM05D008232 ORTHO05D010390 2.8e-09 65.5 106 40.6
Eucgr.G00438 Eucalyptus grandis HOM05D006153 ORTHO05D007701 2.8e-09 65.5 42 57.1
Lj1g0020403 Lotus japonicus HOM05D006153 ORTHO05D007701 2.8e-09 65.5 83 41.0
Lj5g0020623 Lotus japonicus HOM05D006153 ORTHO05D007701 2.8e-09 65.5 39 61.5
Peaxi162Scf00016g00267 Petunia axillaris HOM05D006153 ORTHO05D007701 2.8e-09 65.5 52 50.0
A07p39100 Brassica napus HOM05D008232 ORTHO05D010390 3.7e-09 65.1 103 35.0
BraA07t31461Z Brassica rapa HOM05D008232 ORTHO05D010390 3.7e-09 65.1 103 35.0
ClCG07G011230 Citrullus lanatus HOM05D008232 ORTHO05D010390 3.7e-09 65.1 75 41.3
COL.COLO4_26749 Corchorus olitorius HOM05D008232 ORTHO05D010390 3.7e-09 65.1 40 57.5
Actinidia34374 Actinidia chinensis HOM05D006153 ORTHO05D007701 4.9e-09 64.7 47 51.1
Glyma.10G259200 Glycine max HOM05D006153 ORTHO05D007701 4.9e-09 64.7 47 51.1
BolC6t39770H Brassica oleracea HOM05D008232 ORTHO05D010390 6.3e-09 64.3 103 35.9
Carub.0002s1989 Capsella rubella HOM05D008232 ORTHO05D010390 6.3e-09 64.3 102 38.2
Cfa023521 Carpinus fangiana HOM05D008232 ORTHO05D010390 6.3e-09 64.3 75 42.7
Haze_10254 Corylus avellana HOM05D006153 ORTHO05D007701 6.3e-09 64.3 49 49.0
CsaV3_7G007950 Cucumis sativus L. HOM05D006153 ORTHO05D007701 6.3e-09 64.3 90 35.6
HanXRQChr16g0514901 Helianthus annuus HOM05D006153 ORTHO05D007701 6.3e-09 64.3 51 51.0
Lalb_Chr02g0145121 Lupinus albus HOM05D006153 ORTHO05D007701 6.3e-09 64.3 53 47.2
Manes.10G074900 Manihot esculenta HOM05D006153 ORTHO05D007701 6.3e-09 64.3 38 65.8
C06p47310 Brassica napus HOM05D008232 ORTHO05D010390 8.3e-09 63.9 103 35.9
ClCG02G006680 Citrullus lanatus HOM05D006153 ORTHO05D007701 8.3e-09 63.9 60 50.0
A02p18450 Brassica napus HOM05D008232 ORTHO05D010390 1.1e-08 63.5 104 32.7
BraA02t06884Z Brassica rapa HOM05D008232 ORTHO05D010390 1.1e-08 63.5 104 32.7
Rhsim05G0089900 Rhododendron simsii HOM05D006153 ORTHO05D007701 1.1e-08 63.5 41 58.5
FAN09G3435 Fragaria x ananassa HOM05D008232 ORTHO05D010390 1.4e-08 63.2 94 35.1
Manes.07G064400 Manihot esculenta HOM05D006153 ORTHO05D007701 1.4e-08 63.2 38 63.2
Sc10g0006420 Simmondsia chinensis HOM05D008232 ORTHO05D010390 1.4e-08 63.2 94 38.3
HanXRQChr16g0514451 Helianthus annuus HOM05D006153 ORTHO05D007701 1.8e-08 62.8 77 40.3
Glyma.20G131700 Glycine max HOM05D006153 ORTHO05D007701 2.4e-08 62.4 39 59.0
Lalb_Chr06g0165291 Lupinus albus HOM05D006153 ORTHO05D007701 2.4e-08 62.4 44 56.8
PGR042G3678 Punica granatum HOM05D006153 ORTHO05D007701 2.4e-08 62.4 39 59.0
Phvul.007G043000 Phaseolus vulgaris HOM05D006153 ORTHO05D007701 3.1e-08 62.0 39 59.0
RcHm_v2.0_Chr2g0131491 Rosa chinensis HOM05D008232 ORTHO05D010390 3.1e-08 62.0 77 37.7
Cpa.g.sc200.7 Carica papaya HOM05D006153 ORTHO05D007701 4.1e-08 61.6 37 62.2
COL.COLO4_32545 Corchorus olitorius HOM05D006153 ORTHO05D007701 4.1e-08 61.6 38 57.9
Sc10g0006360 Simmondsia chinensis HOM05D008232 ORTHO05D010390 4.1e-08 61.6 40 52.5
VMungo0720G0345 Vigna mungo HOM05D006153 ORTHO05D007701 4.1e-08 61.6 39 56.4
Duzib052G0610 Durio zibethinus HOM05D006153 ORTHO05D007701 7.0e-08 60.8 38 57.9
Gohir.A01G008400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 7.0e-08 60.8 58 43.1
Gorai.002G009800 Gossypium raimondii HOM05D006153 ORTHO05D007701 7.0e-08 60.8 58 43.1
Aa31LG4G3390 Aethionema arabicum HOM05D008232 ORTHO05D010390 9.2e-08 60.5 84 38.1
Aqoxy6G02752 Aquilegia oxysepala HOM05D006153 ORTHO05D007701 9.2e-08 60.5 36 61.1
Oeu013772.1 Olea europaea HOM05D006153 ORTHO05D007701 9.2e-08 60.5 39 61.5
TAR381G0917 Trochodendron aralioides HOM05D006153 ORTHO05D007701 9.2e-08 60.5 63 47.6
Medtr5g005180 Medicago truncatula HOM05D006153 ORTHO05D007701 1.2e-07 60.1 37 62.2
Gohir.D13G044400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 1.6e-07 59.7 76 39.5
Gorai.013G049200 Gossypium raimondii HOM05D006153 ORTHO05D007701 1.6e-07 59.7 76 39.5
MD05G1096000 Malus domestica HOM05D006153 ORTHO05D007701 1.6e-07 59.7 34 64.7
Nitab4.5_0004685g0060 Nicotiana tabacum HOM05D006153 ORTHO05D007701 1.6e-07 59.7 83 37.3
Actinidia27982 Actinidia chinensis HOM05D006153 ORTHO05D007701 2.0e-07 59.3 38 52.6
Cfa004655 Carpinus fangiana HOM05D006153 ORTHO05D007701 2.0e-07 59.3 47 48.9
Zm00001eb138020 Zea mays HOM05D006153 ORTHO05D007701 2.0e-07 59.3 64 42.2
Dinv15786 Davidia involucrata HOM05D006153 ORTHO05D007701 2.7e-07 58.9 31 74.2
Nn5g30510 Nelumbo nucifera HOM05D006153 ORTHO05D007701 2.7e-07 58.9 48 45.8
PSO541G5112 Papaver somniferum HOM05D006153 ORTHO05D007701 2.7e-07 58.9 34 67.6
QL11p031990 Quercus lobata HOM05D006153 ORTHO05D007701 2.7e-07 58.9 38 57.9
GSVIVG01037871001 Vitis vinifera HOM05D006153 ORTHO05D007701 2.7e-07 58.9 45 48.9
Zm00001eb264740 Zea mays HOM05D006153 ORTHO05D007701 2.7e-07 58.9 62 43.5
Cc04_g05510 Coffea canephora HOM05D000169 ORTHO05D001214 3.5e-07 58.5 87 35.6
GSVIVG01037873001 Vitis vinifera HOM05D006153 ORTHO05D007701 3.5e-07 58.5 45 48.9
Duzib132G0541 Durio zibethinus HOM05D006153 ORTHO05D007701 4.5e-07 58.2 38 57.9
FvH4_2g04480 Fragaria vesca HOM05D006153 ORTHO05D007701 4.5e-07 58.2 51 49.0
FAN24G1230 Fragaria x ananassa HOM05D006153 ORTHO05D007701 4.5e-07 58.2 51 49.0
Os12g0507700 Oryza sativa ssp. japonica HOM05D006153 ORTHO05D007701 4.5e-07 58.2 39 53.8
FAN15G1936 Fragaria x ananassa HOM05D006153 ORTHO05D007701 5.9e-07 57.8 80 38.8
Gohir.A13G045400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 5.9e-07 57.8 75 40.0
MD10G1102200 Malus domestica HOM05D006153 ORTHO05D007701 5.9e-07 57.8 34 61.8
DCAR_003609 Daucus carota HOM05D006153 ORTHO05D007701 7.7e-07 57.4 55 41.8
MBI16_g15146_MAGBIO Magnolia biondii HOM05D006153 ORTHO05D007701 7.7e-07 57.4 48 45.8
QL11p029270 Quercus lobata HOM05D006153 ORTHO05D007701 7.7e-07 57.4 90 38.9
GSVIVG01037872001 Vitis vinifera HOM05D006153 ORTHO05D007701 7.7e-07 57.4 45 46.7
HanXRQChr13g0425861 Helianthus annuus HOM05D006153 ORTHO05D007701 1.0e-06 57.0 43 53.5
Nitab4.5_0001105g0220 Nicotiana tabacum HOM05D006153 ORTHO05D007701 1.0e-06 57.0 39 53.8
PGSC0003DMG400025850 Solanum tuberosum HOM05D006153 ORTHO05D007701 1.0e-06 57.0 39 53.8
Dinv42217 Davidia involucrata HOM05D006153 ORTHO05D007701 1.3e-06 56.6 70 41.4
Potri.001G296900 Populus trichocarpa HOM05D006153 ORTHO05D007701 1.3e-06 56.6 34 58.8
Actinidia08925 Actinidia chinensis HOM05D008232 ORTHO05D010390 1.7e-06 56.2 63 41.3
CiPaw.05G015200 Carya illinoinensis HOM05D006153 ORTHO05D007701 1.7e-06 56.2 36 58.3
Haze_10299 Corylus avellana HOM05D006153 ORTHO05D007701 1.7e-06 56.2 35 51.4
Potri.009G091100 Populus trichocarpa HOM05D006153 ORTHO05D007701 1.7e-06 56.2 46 54.3
Prupe.8G140400 Prunus persica HOM05D006153 ORTHO05D007701 1.7e-06 56.2 92 33.7
Sopen01g049530 Solanum pennellii HOM05D006153 ORTHO05D007701 1.7e-06 56.2 52 48.1
Cfa004694 Carpinus fangiana HOM05D006153 ORTHO05D007701 2.3e-06 55.8 38 47.4
Sc14g0002580 Simmondsia chinensis HOM05D006153 ORTHO05D007701 2.3e-06 55.8 41 48.8
Eucgr.G01281 Eucalyptus grandis HOM05D006153 ORTHO05D007701 2.9e-06 55.5 50 40.0
FAN20G1027 Fragaria x ananassa HOM05D006153 ORTHO05D007701 2.9e-06 55.5 40 55.0
Psat4g228040 Pisum sativum HOM05D006153 ORTHO05D007701 2.9e-06 55.5 36 58.3
Solyc01g107280.3 Solanum lycopersicum HOM05D006153 ORTHO05D007701 2.9e-06 55.5 91 36.3
FAN27G0726 Fragaria x ananassa HOM05D006153 ORTHO05D007701 3.8e-06 55.1 85 37.6
Sabra16G0186000 Salix brachista HOM05D006153 ORTHO05D007701 5.0e-06 54.7 34 58.8
TWI23G0900 Tripterygium wilfordii HOM05D006153 ORTHO05D007701 5.0e-06 54.7 29 69.0
Ca_24350_v3 Cicer arietinum L. HOM05D006153 ORTHO05D007701 6.6e-06 54.3 39 56.4
Ciclev10029838m.g Citrus clementina HOM05D006153 ORTHO05D007701 6.6e-06 54.3 73 43.8
RcHm_v2.0_Chr6g0253971 Rosa chinensis HOM05D006153 ORTHO05D007701 6.6e-06 54.3 50 48.0
Thecc.02G113400 Theobroma cacao HOM05D006153 ORTHO05D007701 6.6e-06 54.3 63 42.9
Aa31LG8G6290 Aethionema arabicum HOM05D006153 ORTHO05D007701 8.6e-06 53.9 48 45.8


User provided reference genes

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