Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR383G0584 Trochodendron aralioides HOM05D007491 ORTHO05D009489 8.3e-89 330.5 183 100.0
Dinv41621 Davidia involucrata HOM05D007491 ORTHO05D009489 9.0e-27 124.4 93 78.5
GSVIVG01035656001 Vitis vinifera HOM05D007491 ORTHO05D009489 1.1e-24 117.5 93 72.0
CiPaw.03G229400 Carya illinoinensis HOM05D007491 ORTHO05D009489 3.9e-22 109.0 93 65.6
Nn2g11682 Nelumbo nucifera HOM05D007491 ORTHO05D009489 6.7e-22 108.2 93 68.8
COL.COLO4_18682 Corchorus olitorius HOM05D007491 ORTHO05D009489 1.9e-21 106.7 96 67.7
Thecc.09G041400 Theobroma cacao HOM05D007491 ORTHO05D009489 9.6e-21 104.4 95 67.4
Nn3g18087 Nelumbo nucifera HOM05D007491 ORTHO05D009489 1.3e-20 104.0 95 66.3
TWI63G0394 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 2.1e-20 103.2 96 62.5
Prupe.7G233600 Prunus persica HOM05D007491 ORTHO05D009489 3.7e-20 102.4 93 62.4
TWI34G1809 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 4.8e-20 102.1 96 63.5
Duzib187G0523 Durio zibethinus HOM05D007491 ORTHO05D009489 8.2e-20 101.3 95 65.3
CSS0038485 Camellia sinensis var. sinensis HOM05D007491 ORTHO05D009489 1.1e-19 100.9 95 64.2
Duzib150G1582 Durio zibethinus HOM05D007491 ORTHO05D009489 1.1e-19 100.9 95 66.3
Manes.16G071301 Manihot esculenta HOM05D007491 ORTHO05D009489 1.5e-18 97.1 94 61.7
Gohir.D06G094200 Gossypium hirsutum HOM05D007491 ORTHO05D009489 2.0e-18 96.7 100 63.0
Gorai.010G108700 Gossypium raimondii HOM05D007491 ORTHO05D009489 2.0e-18 96.7 100 63.0
Rhsim01G0100500 Rhododendron simsii HOM05D007491 ORTHO05D009489 2.0e-18 96.7 96 62.5
Haze_25768 Corylus avellana HOM05D007491 ORTHO05D009489 5.8e-18 95.1 95 62.1
Potri.018G082800 Populus trichocarpa HOM05D007491 ORTHO05D009489 5.8e-18 95.1 96 58.3
ClCG11G002390 Citrullus lanatus HOM05D007491 ORTHO05D009489 7.6e-18 94.7 95 62.1
Cfa003238 Carpinus fangiana HOM05D007491 ORTHO05D009489 1.0e-17 94.4 97 60.8
PGR102G1855 Punica granatum HOM05D007491 ORTHO05D009489 1.7e-17 93.6 94 62.8
Sed0025893 Sechium edule HOM05D007491 ORTHO05D009489 1.7e-17 93.6 97 61.9
Dinv36653 Davidia involucrata HOM05D007491 ORTHO05D009489 2.9e-17 92.8 93 65.6
THA.LOC104822629 Tarenaya hassleriana HOM05D007491 ORTHO05D009489 6.5e-17 91.7 97 57.7
Sabra18G0070600 Salix brachista HOM05D007491 ORTHO05D009489 8.4e-17 91.3 96 58.3
CsaV3_2G002190 Cucumis sativus L. HOM05D007491 ORTHO05D009489 1.9e-16 90.1 94 60.6
Sed0000101 Sechium edule HOM05D007491 ORTHO05D009489 1.9e-16 90.1 94 61.7
Hma1.2p1_1463F.1_g285180 Hydrangea macrophylla HOM05D007491 ORTHO05D009489 4.2e-16 89.0 97 57.7
Oeu013426.2 Olea europaea HOM05D007491 ORTHO05D009489 5.5e-16 88.6 96 58.3
PSO782G0237 Papaver somniferum HOM05D007491 ORTHO05D009489 7.1e-16 88.2 98 65.3
Ciclev10010011m.g Citrus clementina HOM05D007491 ORTHO05D009489 9.3e-16 87.8 97 60.8
Gohir.A06G094700 Gossypium hirsutum HOM05D007491 ORTHO05D009489 9.3e-16 87.8 106 56.6
MD15G1182000 Malus domestica HOM05D007491 ORTHO05D009489 2.1e-15 86.7 93 58.1
TWI32G0642 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 2.1e-15 86.7 96 58.3
Cc06_g09900 Coffea canephora HOM05D007491 ORTHO05D009489 3.5e-15 85.9 95 60.0
MD02G1043400 Malus domestica HOM05D007491 ORTHO05D009489 6.0e-15 85.1 93 55.9
Eucgr.C03814 Eucalyptus grandis HOM05D007491 ORTHO05D009489 7.9e-15 84.7 96 60.4
RcHm_v2.0_Chr2g0090011 Rosa chinensis HOM05D007491 ORTHO05D009489 7.9e-15 84.7 93 61.3
MELO3C004564.2 Cucumis melo HOM05D007491 ORTHO05D009489 1.8e-14 83.6 93 58.1
PSO566G0269 Papaver somniferum HOM05D007491 ORTHO05D009489 3.9e-14 82.4 98 62.2
FvH4_1g04361 Fragaria vesca HOM05D007491 ORTHO05D009489 5.1e-14 82.0 93 54.8
FAN19G0791 Fragaria x ananassa HOM05D007491 ORTHO05D009489 5.1e-14 82.0 93 54.8
AT1G55205 Arabidopsis thaliana HOM05D007491 ORTHO05D009489 8.7e-14 81.3 95 54.7
AUR62009312 Chenopodium quinoa HOM05D007491 ORTHO05D009489 1.1e-13 80.9 92 53.3
CANSAT78G0421 Cannabis sativa HOM05D007491 ORTHO05D009489 1.5e-13 80.5 93 55.9
Manes.03G022800 Manihot esculenta HOM05D007491 ORTHO05D009489 2.5e-13 79.7 93 55.9
Thecc.09G107500 Theobroma cacao HOM05D007491 ORTHO05D009489 9.7e-13 77.8 94 55.3
Thhalv10021835m.g Eutrema salsugineum HOM05D007491 ORTHO05D009489 1.3e-12 77.4 95 54.7
FAN26G2745 Fragaria x ananassa HOM05D001691 ORTHO05D001704 1.3e-12 77.4 95 51.6
Carub.0003s1318 Capsella rubella HOM05D007491 ORTHO05D009489 1.6e-12 77.0 95 56.8
FAN23G1386 Fragaria x ananassa HOM05D007491 ORTHO05D009489 1.6e-12 77.0 93 54.8
Gohir.D07G006700 Gossypium hirsutum HOM05D007491 ORTHO05D009489 2.8e-12 76.3 94 56.4
Glyma.08G037500 Glycine max HOM05D007491 ORTHO05D009489 3.7e-12 75.9 94 55.3
Gohir.A07G005300 Gossypium hirsutum HOM05D007491 ORTHO05D009489 3.7e-12 75.9 94 55.3
Carub.0001s4372 Capsella rubella HOM05D007491 ORTHO05D009489 6.3e-12 75.1 93 49.5
CARHR044840 Cardamine hirsuta HOM05D007491 ORTHO05D009489 6.3e-12 75.1 93 54.8
MBI01_g30748_MAGBIO Magnolia biondii HOM05D007491 ORTHO05D009489 8.2e-12 74.7 95 57.9
AT3G13674 Arabidopsis thaliana HOM05D007491 ORTHO05D009489 1.1e-11 74.3 95 53.7
CDE05G0808 Ceratophyllum demersum HOM05D007491 ORTHO05D009489 1.1e-11 74.3 74 59.5
CDE05G2495 Ceratophyllum demersum HOM05D001777 ORTHO05D001809 1.1e-11 74.3 92 54.3
Lalb_Chr16g0388121 Lupinus albus HOM05D007491 ORTHO05D009489 1.1e-11 74.3 94 55.3
Peaxi162Scf00231g00326 Petunia axillaris HOM05D007491 ORTHO05D009489 1.1e-11 74.3 94 54.3
AL1G63250 Arabidopsis lyrata HOM05D007491 ORTHO05D009489 1.4e-11 73.9 95 51.6
Ca_17329_v3 Cicer arietinum L. HOM05D007491 ORTHO05D009489 1.8e-11 73.6 96 53.1
Phvul.002G312200 Phaseolus vulgaris HOM05D007491 ORTHO05D009489 4.1e-11 72.4 94 53.2
Sp1g40890 Schrenkiella parvula HOM05D007491 ORTHO05D009489 4.1e-11 72.4 91 50.5
CARHR088390 Cardamine hirsuta HOM05D007491 ORTHO05D009489 6.9e-11 71.6 96 53.1
Thhalv10011893m.g Eutrema salsugineum HOM05D007491 ORTHO05D009489 6.9e-11 71.6 93 50.5
Lalb_Chr05g0222981 Lupinus albus HOM05D007491 ORTHO05D009489 6.9e-11 71.6 92 52.2
VMungo0251G1641 Vigna mungo HOM05D007491 ORTHO05D009489 9.0e-11 71.2 95 51.6
Hund19532 Selenicereus undatus HOM05D007491 ORTHO05D009489 1.2e-10 70.9 92 50.0
TPR.G23496 Trifolium pratense HOM05D007491 ORTHO05D009489 1.5e-10 70.5 95 53.7
Glyma.05G230000 Glycine max HOM05D007491 ORTHO05D009489 2.6e-10 69.7 68 58.8
C06p10160 Brassica napus HOM05D007491 ORTHO05D009489 3.4e-10 69.3 93 49.5
Lsat_1_v5_gn_5_33441 Lactuca sativa HOM05D007491 ORTHO05D009489 4.5e-10 68.9 94 53.2
A06p00340 Brassica napus HOM05D007491 ORTHO05D009489 7.7e-10 68.2 93 49.5
BraA06t23249Z Brassica rapa HOM05D007491 ORTHO05D009489 7.7e-10 68.2 93 49.5
HanXRQChr12g0355021 Helianthus annuus HOM05D007491 ORTHO05D009489 7.7e-10 68.2 94 52.1
Lsat_1_v5_gn_5_103040 Lactuca sativa HOM05D007491 ORTHO05D009489 7.7e-10 68.2 96 51.0
Ah.16g106040 Amaranthus hybridus HOM05D007491 ORTHO05D009489 2.2e-09 66.6 96 50.0
Gorai.001G006300 Gossypium raimondii HOM05D007491 ORTHO05D009489 2.2e-09 66.6 90 53.3
Lj2g0023927 Lotus japonicus HOM05D007491 ORTHO05D009489 2.2e-09 66.6 98 52.0
ECA234G1405 Erigeron canadensis HOM05D007491 ORTHO05D009489 2.9e-09 66.2 93 50.5
SHI47168 Sapria himalayana HOM05D007491 ORTHO05D009489 3.8e-09 65.9 103 46.6
EL10Ac2g04054 Beta vulgaris HOM05D007491 ORTHO05D009489 5.0e-09 65.5 92 50.0
BolC6t36089H Brassica oleracea HOM05D000490 ORTHO05D000785 5.0e-09 65.5 86 50.0
BcaC01g01475 Brassica carinata HOM05D007491 ORTHO05D009489 6.5e-09 65.1 94 47.9
C03p92400 Brassica napus HOM05D007491 ORTHO05D009489 6.5e-09 65.1 94 47.9
Ciclev10010763m.g Citrus clementina HOM05D007491 ORTHO05D009489 6.5e-09 65.1 52 67.3
Lj4g0004733 Lotus japonicus HOM05D007491 ORTHO05D009489 6.5e-09 65.1 58 62.1
BolC3t21548H Brassica oleracea HOM05D007491 ORTHO05D009489 8.5e-09 64.7 94 46.8
HanXRQChr10g0318621 Helianthus annuus HOM05D007491 ORTHO05D009489 1.1e-08 64.3 94 51.1
A08p00850 Brassica napus HOM05D007491 ORTHO05D009489 1.9e-08 63.5 94 46.8
BraA08t32143Z Brassica rapa HOM05D007491 ORTHO05D009489 1.9e-08 63.5 94 46.8
BcaB04g16984 Brassica carinata HOM05D007491 ORTHO05D009489 2.5e-08 63.2 92 48.9
arahy.Tifrunner.gnm1.ann1.RT52KZ Arachis hypogaea HOM05D007491 ORTHO05D009489 5.5e-08 62.0 85 54.1
arahy.Tifrunner.gnm1.ann1.KI7M62 Arachis hypogaea HOM05D007491 ORTHO05D009489 7.2e-08 61.6 90 50.0
Psat7g015280 Pisum sativum HOM05D007491 ORTHO05D009489 2.1e-07 60.1 93 46.2
Os06g0332500 Oryza sativa ssp. japonica HOM05D007491 ORTHO05D009489 6.1e-07 58.5 96 43.8
Medtr8g103300 Medicago truncatula HOM05D007491 ORTHO05D009489 7.9e-07 58.2 94 48.9
Os02g0273900 Oryza sativa ssp. japonica HOM05D007491 ORTHO05D009489 7.9e-07 58.2 51 58.8
HPP92_019952 Vanilla planifolia HOM05D007293 ORTHO05D009143 8.8e-06 54.7 78 47.4


User provided reference genes

Program Settings