Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR383G0558 Trochodendron aralioides HOM05D004174 ORTHO05D004624 1.1e-259 899.4 439 100.0
Nn8g39387 Nelumbo nucifera HOM05D004174 ORTHO05D004624 1.2e-189 666.8 423 77.3
Dinv36548 Davidia involucrata HOM05D004174 ORTHO05D004624 3.4e-189 665.2 392 83.4
CiPaw.03G241700 Carya illinoinensis HOM05D004174 ORTHO05D004624 3.5e-186 655.2 429 76.7
Haze_25614 Corylus avellana HOM05D004174 ORTHO05D004624 1.7e-185 652.9 426 77.2
Hma1.2p1_0665F.1_g199150 Hydrangea macrophylla HOM05D004174 ORTHO05D004624 2.3e-185 652.5 431 76.6
Cfa003346 Carpinus fangiana HOM05D004174 ORTHO05D004624 3.9e-185 651.7 426 76.5
Prupe.7G239600 Prunus persica HOM05D004174 ORTHO05D004624 3.9e-185 651.7 419 77.3
Eucgr.C04181 Eucalyptus grandis HOM05D004174 ORTHO05D004624 2.4e-182 642.5 447 72.7
RcHm_v2.0_Chr2g0089131 Rosa chinensis HOM05D004174 ORTHO05D004624 9.0e-182 640.6 402 77.1
Aqoxy7G02096 Aquilegia oxysepala HOM05D004174 ORTHO05D004624 9.9e-181 637.1 428 75.0
MD00G1107300 Malus domestica HOM05D004174 ORTHO05D004624 2.2e-180 636.0 394 78.4
MD02G1035600 Malus domestica HOM05D004174 ORTHO05D004624 2.2e-180 636.0 395 78.7
TWI34G0924 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 2.2e-180 636.0 408 77.5
vmacro06177 Vaccinium macrocarpon HOM05D004174 ORTHO05D004624 2.9e-180 635.6 424 75.7
Atru.chr7.1197 Acer truncatum HOM05D004174 ORTHO05D004624 1.4e-179 633.3 406 76.1
FAN19G0954 Fragaria x ananassa HOM05D004174 ORTHO05D004624 2.4e-179 632.5 388 79.4
FAN28G1355 Fragaria x ananassa HOM05D004174 ORTHO05D004624 2.4e-179 632.5 419 74.5
Actinidia07434 Actinidia chinensis HOM05D004174 ORTHO05D004624 4.2e-179 631.7 425 74.6
Potri.006G154200 Populus trichocarpa HOM05D004174 ORTHO05D004624 4.2e-179 631.7 389 77.1
FvH4_1g03600 Fragaria vesca HOM05D004174 ORTHO05D004624 5.4e-179 631.3 388 79.1
Manes.14G130500 Manihot esculenta HOM05D004174 ORTHO05D004624 5.4e-179 631.3 399 78.2
Potri.018G070400 Populus trichocarpa HOM05D004174 ORTHO05D004624 5.4e-179 631.3 417 74.1
Gohir.D13G204700 Gossypium hirsutum HOM05D004174 ORTHO05D004624 1.2e-178 630.2 425 74.4
FAN23G0992 Fragaria x ananassa HOM05D004174 ORTHO05D004624 6.0e-178 627.9 388 78.6
Actinidia26403 Actinidia chinensis HOM05D004174 ORTHO05D004624 1.0e-177 627.1 425 74.6
Manes.06G050000 Manihot esculenta HOM05D004174 ORTHO05D004624 1.0e-177 627.1 399 77.2
QL02p087765 Quercus lobata HOM05D004174 ORTHO05D004624 3.0e-177 625.5 394 77.9
Gorai.013G233600 Gossypium raimondii HOM05D004174 ORTHO05D004624 6.6e-177 624.4 425 74.1
Thecc.09G123000 Theobroma cacao HOM05D004174 ORTHO05D004624 1.5e-176 623.2 411 76.4
Cc06_g08790 Coffea canephora HOM05D004174 ORTHO05D004624 3.3e-176 622.1 394 76.4
Gohir.A13G199200 Gossypium hirsutum HOM05D004174 ORTHO05D004624 4.3e-176 621.7 430 73.5
MSTRG.19607 Avicennia marina HOM05D004174 ORTHO05D004624 7.3e-176 620.9 388 76.5
ClCG11G002850 Citrullus lanatus HOM05D004174 ORTHO05D004624 1.6e-175 619.8 396 76.0
Ciclev10008313m.g Citrus clementina HOM05D004174 ORTHO05D004624 2.1e-175 619.4 431 72.4
CSS0035220 Camellia sinensis var. sinensis HOM05D004174 ORTHO05D004624 3.6e-175 618.6 401 78.1
COL.COLO4_05761 Corchorus olitorius HOM05D004174 ORTHO05D004624 6.2e-175 617.8 397 77.3
THA.LOC104811038 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 6.2e-175 617.8 432 70.4
Oeu058056.1 Olea europaea HOM05D004174 ORTHO05D004624 4.0e-174 615.1 390 75.6
FAN26G3217 Fragaria x ananassa HOM05D004174 ORTHO05D004624 5.3e-174 614.8 387 77.3
Sabra18G0061500 Salix brachista HOM05D004174 ORTHO05D004624 6.9e-174 614.4 430 70.5
Hund09144 Selenicereus undatus HOM05D004174 ORTHO05D004624 9.0e-174 614.0 405 74.6
CANSAT11G0280 Cannabis sativa HOM05D004174 ORTHO05D004624 3.4e-173 612.1 422 73.0
Duzib150G0384 Durio zibethinus HOM05D004174 ORTHO05D004624 3.4e-173 612.1 389 77.1
MELO3C004525.2 Cucumis melo HOM05D004174 ORTHO05D004624 1.3e-172 610.1 396 75.0
EL10Ac8g18616 Beta vulgaris HOM05D004174 ORTHO05D004624 2.2e-172 609.4 392 76.3
Peaxi162Scf02490g00007 Petunia axillaris HOM05D004174 ORTHO05D004624 2.9e-172 609.0 389 75.8
TWI32G1270 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 2.9e-172 609.0 427 73.3
Sed0019119 Sechium edule HOM05D004174 ORTHO05D004624 3.8e-172 608.6 398 75.4
Sopen06g031500 Solanum pennellii HOM05D004174 ORTHO05D004624 4.9e-172 608.2 392 75.8
MBI04_g24208_MAGBIO Magnolia biondii HOM05D004174 ORTHO05D004624 6.4e-172 607.8 414 73.4
PGSC0003DMG400024321 Solanum tuberosum HOM05D004174 ORTHO05D004624 8.4e-172 607.4 389 76.3
CsaV3_2G002690 Cucumis sativus L. HOM05D004174 ORTHO05D004624 7.1e-171 604.4 394 74.4
Solyc06g075080.4 Solanum lycopersicum HOM05D004174 ORTHO05D004624 7.1e-171 604.4 392 75.5
Ca_03159_v3 Cicer arietinum L. HOM05D004174 ORTHO05D004624 2.1e-170 602.8 385 77.9
THA.LOC104799651 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 3.5e-170 602.1 407 71.0
PGR102G0881 Punica granatum HOM05D004174 ORTHO05D004624 2.3e-169 599.4 394 73.9
SalBow3G2402 Salvia bowleyana HOM05D004174 ORTHO05D004624 2.3e-169 599.4 409 73.8
CARHR192760 Cardamine hirsuta HOM05D004174 ORTHO05D004624 8.7e-169 597.4 424 70.0
Duzib187G0531 Durio zibethinus HOM05D004174 ORTHO05D004624 3.3e-168 595.5 400 74.0
PSO170G6838 Papaver somniferum HOM05D004174 ORTHO05D004624 4.3e-168 595.1 397 74.6
Thhalv10013566m.g Eutrema salsugineum HOM05D004174 ORTHO05D004624 1.3e-167 593.6 425 69.4
Psat1g025760 Pisum sativum HOM05D004174 ORTHO05D004624 1.6e-167 593.2 397 75.6
Aa31LG8G2170 Aethionema arabicum HOM05D004174 ORTHO05D004624 2.1e-167 592.8 424 70.0
Migut.J01169 Erythranthe guttata HOM05D004174 ORTHO05D004624 2.1e-167 592.8 386 73.8
Medtr2g054680 Medicago truncatula HOM05D004174 ORTHO05D004624 4.8e-167 591.7 385 76.9
AT5G20070 Arabidopsis thaliana HOM05D004174 ORTHO05D004624 6.2e-167 591.3 424 69.8
PSO455G0049 Papaver somniferum HOM05D004174 ORTHO05D004624 1.1e-166 590.5 396 73.7
AL6G31620 Arabidopsis lyrata HOM05D004174 ORTHO05D004624 1.4e-166 590.1 424 70.0
CAN.G1966.1 Capsicum annuum HOM05D004174 ORTHO05D004624 4.0e-166 588.6 391 73.9
Carub.0006s1845 Capsella rubella HOM05D004174 ORTHO05D004624 5.3e-166 588.2 426 69.0
COL.COLO4_17917 Corchorus olitorius HOM05D004174 ORTHO05D004624 2.0e-165 586.3 399 74.2
Nitab4.5_0006698g0010 Nicotiana tabacum HOM05D004174 ORTHO05D004624 2.0e-165 586.3 421 70.5
HanXRQChr12g0368841 Helianthus annuus HOM05D004174 ORTHO05D004624 2.6e-165 585.9 415 70.6
BcaB01g04811 Brassica carinata HOM05D004174 ORTHO05D004624 7.6e-165 584.3 430 68.6
Lsat_1_v5_gn_8_58900 Lactuca sativa HOM05D004174 ORTHO05D004624 9.9e-165 583.9 392 73.5
Sc18g0000710 Simmondsia chinensis HOM05D004174 ORTHO05D004624 9.9e-165 583.9 387 74.2
Nitab4.5_0000106g0230 Nicotiana tabacum HOM05D004174 ORTHO05D004624 3.8e-164 582.0 421 70.1
Lj1g0010752 Lotus japonicus HOM05D004174 ORTHO05D004624 4.9e-164 581.6 403 74.7
BcaC03g13730 Brassica carinata HOM05D004174 ORTHO05D004624 2.5e-163 579.3 392 71.7
HanXRQChr06g0180241 Helianthus annuus HOM05D004174 ORTHO05D004624 2.5e-163 579.3 400 71.5
A02p06020 Brassica napus HOM05D004174 ORTHO05D004624 5.5e-163 578.2 392 71.9
BraA02t05553Z Brassica rapa HOM05D004174 ORTHO05D004624 5.5e-163 578.2 392 71.9
SGA_v2.0_scaffold229G43324 Striga asiatica HOM05D004174 ORTHO05D004624 5.5e-163 578.2 406 70.2
Sp6g24340 Schrenkiella parvula HOM05D004174 ORTHO05D004624 1.6e-162 576.6 427 67.4
A03p09800 Brassica napus HOM05D004174 ORTHO05D004624 2.1e-162 576.2 437 67.3
BraA03t10295Z Brassica rapa HOM05D004174 ORTHO05D004624 2.1e-162 576.2 437 67.3
Phvul.009G197200 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 3.5e-162 575.5 415 70.6
BolC3t13612H Brassica oleracea HOM05D004174 ORTHO05D004624 4.6e-162 575.1 436 66.5
VMungo1309G2067 Vigna mungo HOM05D004174 ORTHO05D004624 1.3e-161 573.5 386 73.8
BcaB05g22875 Brassica carinata HOM05D004174 ORTHO05D004624 2.3e-161 572.8 389 71.0
TPR.G31095 Trifolium pratense HOM05D004174 ORTHO05D004624 2.3e-161 572.8 412 71.8
HanXRQChr03g0062501 Helianthus annuus HOM05D004174 ORTHO05D004624 3.9e-161 572.0 393 71.5
C03p11380 Brassica napus HOM05D004174 ORTHO05D004624 5.1e-161 571.6 438 66.7
Lalb_Chr23g0275331 Lupinus albus HOM05D004174 ORTHO05D004624 8.7e-161 570.9 417 69.8
DCAR_017828 Daucus carota HOM05D004174 ORTHO05D004624 5.6e-160 568.2 389 71.7
Glyma.06G216700 Glycine max HOM05D004174 ORTHO05D004624 7.4e-160 567.8 387 74.9
BNapus_Darmor_BZH_scaffold_38p01820 Brassica napus HOM05D004174 ORTHO05D004624 8.2e-159 564.3 392 70.9
MD15G1175700 Malus domestica HOM05D004174 ORTHO05D004624 8.2e-159 564.3 446 66.1
Lsat_1_v5_gn_7_42401 Lactuca sativa HOM05D004174 ORTHO05D004624 1.8e-158 563.1 390 70.8
Glyma.17G116600 Glycine max HOM05D004174 ORTHO05D004624 2.9e-156 555.8 392 70.2
Psat4g040360 Pisum sativum HOM05D004174 ORTHO05D004624 6.1e-154 548.1 387 69.5
Rhsim03G0246500 Rhododendron simsii HOM05D004174 ORTHO05D004624 3.9e-153 545.4 350 76.6
TPR.G10694 Trifolium pratense HOM05D004174 ORTHO05D004624 5.1e-153 545.0 388 68.8
arahy.Tifrunner.gnm1.ann1.SBVG8E Arachis hypogaea HOM05D004174 ORTHO05D004624 1.5e-152 543.5 399 66.9
ATR1156G006 Amborella trichopoda HOM05D004174 ORTHO05D004624 1.9e-152 543.1 432 65.0
DCAR_009201 Daucus carota HOM05D004174 ORTHO05D004624 1.9e-152 543.1 392 68.4
Phvul.003G162700 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 5.7e-152 541.6 387 70.3
arahy.Tifrunner.gnm1.ann1.E6UBTJ Arachis hypogaea HOM05D004174 ORTHO05D004624 4.8e-151 538.5 411 65.5
VMungo1215G2625 Vigna mungo HOM05D004174 ORTHO05D004624 1.8e-150 536.6 386 69.4
Gohir.D08G260000 Gossypium hirsutum HOM05D004174 ORTHO05D004624 4.1e-150 535.4 400 67.0
Dinv41532 Davidia involucrata HOM05D004174 ORTHO05D004624 5.3e-150 535.0 346 78.0
Medtr4g113990 Medicago truncatula HOM05D004174 ORTHO05D004624 6.9e-150 534.6 387 68.7
Gorai.004G277900 Gossypium raimondii HOM05D004174 ORTHO05D004624 3.4e-149 532.3 407 66.3
Lalb_Chr07g0178801 Lupinus albus HOM05D004174 ORTHO05D004624 3.4e-149 532.3 385 68.6
Lalb_Chr08g0234871 Lupinus albus HOM05D004174 ORTHO05D004624 4.5e-149 531.9 379 70.7
MELO3C026643.2 Cucumis melo HOM05D004174 ORTHO05D004624 7.7e-149 531.2 387 68.2
CDE02G3646 Ceratophyllum demersum HOM05D004174 ORTHO05D004624 6.5e-148 528.1 388 67.8
ECA240G3275 Erigeron canadensis HOM05D004174 ORTHO05D004624 7.2e-147 524.6 332 75.9
AUR62033476 Chenopodium quinoa HOM05D004174 ORTHO05D004624 1.6e-146 523.5 392 68.1
GSVIVG01015501001 Vitis vinifera HOM05D004174 ORTHO05D004624 6.7e-145 518.1 291 85.2
HPP92_000685 Vanilla planifolia HOM05D004174 ORTHO05D004624 1.8e-142 510.0 388 65.2
HPP92_000661 Vanilla planifolia HOM05D004174 ORTHO05D004624 4.1e-142 508.8 389 64.8
Sed0008859 Sechium edule HOM05D004174 ORTHO05D004624 1.0e-140 504.2 391 63.9
Zm00001eb377430 Zea mays HOM05D004174 ORTHO05D004624 3.2e-139 499.2 398 65.6
Os06g0141166 Oryza sativa ssp. japonica HOM05D004174 ORTHO05D004624 3.8e-132 475.7 410 61.2
ClCG06G010920 Citrullus lanatus HOM05D004174 ORTHO05D004624 2.1e-130 469.9 387 60.5
SEGI_17043 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 1.1e-128 464.2 390 59.7
FAN26G0665 Fragaria x ananassa HOM05D004174 ORTHO05D004624 1.7e-124 450.3 240 87.9
Lj7A632G45 Lonicera japonica HOM05D004174 ORTHO05D004624 2.7e-114 416.4 281 73.0
Ah.02g124290 Amaranthus hybridus HOM05D004174 ORTHO05D004624 2.8e-111 406.4 244 78.3
Ah.14g080300 Amaranthus hybridus HOM05D004174 ORTHO05D004624 2.8e-111 406.4 241 79.3
Gohir.A08G239300 Gossypium hirsutum HOM05D004174 ORTHO05D004624 1.7e-103 380.6 284 66.9
Lj4g0002160 Lotus japonicus HOM05D004174 ORTHO05D004624 9.2e-102 374.8 283 66.4
AagrBONN_evm.TU.Sc2ySwM_368.699 Anthoceros agrestis HOM05D004174 ORTHO05D004624 9.5e-99 364.8 413 47.9
Mapoly0103s0044 Marchantia polymorpha HOM05D004174 ORTHO05D004624 3.3e-91 339.7 423 46.6
Lj4A460T58 Lonicera japonica HOM05D004174 ORTHO05D004624 5.6e-91 339.0 234 71.4
SEGI_09002 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 1.2e-90 337.8 272 58.5
Pp3c3_2090 Physcomitrium patens HOM05D004174 ORTHO05D004624 2.0e-88 330.5 401 45.4
SMO169G0291 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 2.9e-87 326.6 250 63.2
AUR62030487 Chenopodium quinoa HOM05D004174 ORTHO05D004624 1.6e-77 294.3 172 82.6
AUR62011109 Chenopodium quinoa HOM05D004174 ORTHO05D004624 6.2e-74 282.3 186 74.7
Glyma.05G008302 Glycine max HOM05D004174 ORTHO05D004624 1.5e-64 251.1 173 71.1
SEGI_03330 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 1.1e-62 245.0 282 45.0
BolC2t07007H Brassica oleracea HOM05D004174 ORTHO05D004624 3.4e-56 223.4 204 56.4
Cpa.g.sc648.3 Carica papaya HOM05D004174 ORTHO05D004624 4.2e-54 216.5 196 60.2
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.9e-51 207.6 173 63.0
Ah.14g080310 Amaranthus hybridus HOM05D004174 ORTHO05D004624 7.1e-46 189.1 169 58.6
AUR62015314 Chenopodium quinoa HOM05D004174 ORTHO05D004624 6.7e-44 182.6 146 62.3
Cc11_g15180 Coffea canephora HOM05D004174 ORTHO05D004624 1.6e-42 177.9 110 80.0
Cre09.g396900 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 2.8e-42 177.2 227 41.4
Sabra06G0122300 Salix brachista HOM05D004174 ORTHO05D004624 1.5e-40 171.4 242 43.0
MD02G1035400 Malus domestica HOM05D004174 ORTHO05D004624 2.1e-37 161.0 82 87.8
Haze_27339 Corylus avellana HOM05D004174 ORTHO05D004624 3.7e-34 150.2 181 47.0
Cfa023976 Carpinus fangiana HOM05D003934 ORTHO05D005108 1.9e-30 137.9 425 27.5
SEGI_13131 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 1.0e-28 132.1 241 36.5
Pp3c14_12120 Physcomitrium patens HOM05D004174 ORTHO05D004624 7.4e-27 125.9 239 34.7
Lj4C460T3 Lonicera japonica HOM05D004174 ORTHO05D004624 1.8e-25 121.3 76 73.7
Ah.12g053390 Amaranthus hybridus HOM05D004174 ORTHO05D004624 3.1e-25 120.6 64 84.4
Ah.12g055680 Amaranthus hybridus HOM05D004174 ORTHO05D004624 9.1e-25 119.0 64 82.8
Ah.05g171270 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.5e-24 118.2 64 82.8
Mapoly0019s0154 Marchantia polymorpha HOM05D004174 ORTHO05D004624 4.5e-24 116.7 274 33.6
MCO10G159 Micromonas commoda HOM05D004174 ORTHO05D004624 8.5e-23 112.5 322 29.2
PRCOL_00006603 Prasinoderma coloniale HOM05D004174 ORTHO05D004624 3.3e-19 100.5 141 37.6
CBR_g46446 Chara braunii HOM05D004174 ORTHO05D004624 4.4e-19 100.1 210 33.8
VMungo0647G2130 Vigna mungo HOM05D004174 ORTHO05D004624 9.7e-19 99.0 146 41.8
Cre13.g582476 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 1.9e-14 84.7 171 33.3
Psat3g000160 Pisum sativum HOM05D004174 ORTHO05D004624 1.0e-12 79.0 90 47.8
VMungo1215G0447 Vigna mungo HOM05D006361 ORTHO05D007824 7.5e-11 72.8 67 50.7
Ah.12g053410 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.1e-09 68.9 38 78.9
SMO141G0190 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 4.5e-08 63.5 119 36.1
BcaNung04410 Brassica carinata HOM05D005723 ORTHO05D005968 1.5e-06 58.5 193 27.5
A05p02710 Brassica napus HOM05D005723 ORTHO05D005968 7.2e-06 56.2 181 27.6


User provided reference genes

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