Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR383G0542 Trochodendron aralioides HOM05D007702 ORTHO05D009736 6.7e-175 617.5 360 100.0
Nn2g12749 Nelumbo nucifera HOM05D007702 ORTHO05D009736 1.1e-71 274.6 296 55.1
MBI07_g12934_MAGBIO Magnolia biondii HOM05D007702 ORTHO05D009736 1.4e-71 274.2 416 44.2
CDE05G1247 Ceratophyllum demersum HOM05D007702 ORTHO05D009736 1.3e-56 224.6 311 46.0
Haze_08173 Corylus avellana HOM05D007702 ORTHO05D009736 1.8e-55 220.7 360 40.8
CSS0020400 Camellia sinensis var. sinensis HOM05D007702 ORTHO05D009736 2.0e-54 217.2 191 59.2
CiPaw.11G097300 Carya illinoinensis HOM05D007702 ORTHO05D009736 3.4e-54 216.5 362 40.1
Cfa012496 Carpinus fangiana HOM05D007702 ORTHO05D009736 2.2e-53 213.8 357 40.1
MD09G1165300 Malus domestica HOM05D007702 ORTHO05D009736 8.4e-53 211.8 256 51.2
PGR042G2668 Punica granatum HOM05D007702 ORTHO05D009736 1.9e-52 210.7 142 69.0
Actinidia21887 Actinidia chinensis HOM05D007702 ORTHO05D009736 5.5e-52 209.1 155 67.7
Manes.06G177600 Manihot esculenta HOM05D007702 ORTHO05D009736 9.3e-52 208.4 208 54.3
Ah.08g217790 Amaranthus hybridus HOM05D007702 ORTHO05D009736 4.6e-51 206.1 149 64.4
Solyc01g102860.2 Solanum lycopersicum HOM05D007702 ORTHO05D009736 4.6e-51 206.1 257 46.7
Sopen01g045260 Solanum pennellii HOM05D007702 ORTHO05D009736 1.0e-50 204.9 266 45.5
Cc03_g07590 Coffea canephora HOM05D007702 ORTHO05D009736 1.3e-50 204.5 166 63.3
Nitab4.5_0006053g0030 Nicotiana tabacum HOM05D007702 ORTHO05D009736 1.3e-50 204.5 166 62.7
AUR62001339 Chenopodium quinoa HOM05D007702 ORTHO05D009736 3.0e-50 203.4 320 39.7
Aqoxy7G02739 Aquilegia oxysepala HOM05D007702 ORTHO05D009736 3.9e-50 203.0 190 56.8
PGSC0003DMG400018255 Solanum tuberosum HOM05D007702 ORTHO05D009736 6.7e-50 202.2 279 44.1
Peaxi162Scf00051g00198 Petunia axillaris HOM05D007702 ORTHO05D009736 8.7e-50 201.8 159 66.7
AUR62025666 Chenopodium quinoa HOM05D007702 ORTHO05D009736 1.5e-49 201.1 135 69.6
EL10Ac7g18156 Beta vulgaris HOM05D007702 ORTHO05D009736 4.3e-49 199.5 223 50.7
Nitab4.5_0010634g0010 Nicotiana tabacum HOM05D007702 ORTHO05D009736 1.3e-48 198.0 273 44.7
Potri.008G004800 Populus trichocarpa HOM05D007702 ORTHO05D009736 1.3e-48 198.0 186 56.5
DCAR_007958 Daucus carota HOM05D007702 ORTHO05D009736 2.8e-48 196.8 130 67.7
Sabra08G0002400 Salix brachista HOM05D007702 ORTHO05D009736 1.8e-47 194.1 252 46.0
Ciclev10032212m.g Citrus clementina HOM05D007702 ORTHO05D009736 2.4e-47 193.7 153 63.4
Duzib235G0870 Durio zibethinus HOM05D007702 ORTHO05D009736 2.4e-47 193.7 237 47.3
Prupe.3G023000 Prunus persica HOM05D007702 ORTHO05D009736 3.1e-47 193.4 180 57.2
CANSAT54G2309 Cannabis sativa HOM05D007702 ORTHO05D009736 6.9e-47 192.2 199 51.3
CAN.G2401.1 Capsicum annuum HOM05D000005 ORTHO05D000012 1.2e-46 191.4 120 73.3
Migut.I01200 Erythranthe guttata HOM05D007702 ORTHO05D009736 2.6e-46 190.3 158 60.1
Eucgr.J03180 Eucalyptus grandis HOM05D007702 ORTHO05D009736 3.4e-46 189.9 170 58.2
CANSAT54G1387 Cannabis sativa HOM05D007702 ORTHO05D009736 7.6e-46 188.7 354 36.7
Thhalv10012117m.g Eutrema salsugineum HOM05D007702 ORTHO05D009736 1.0e-45 188.3 183 57.4
BcaB07g33554 Brassica carinata HOM05D007702 ORTHO05D009736 1.7e-45 187.6 268 43.3
A06p02690 Brassica napus HOM05D007702 ORTHO05D009736 1.7e-45 187.6 167 59.9
TPR.G39495 Trifolium pratense HOM05D007702 ORTHO05D009736 1.7e-45 187.6 140 65.7
AT1G51080 Arabidopsis thaliana HOM05D007702 ORTHO05D009736 2.2e-45 187.2 137 67.2
BcaC08g43279 Brassica carinata HOM05D007702 ORTHO05D009736 2.2e-45 187.2 171 60.8
C06p06290 Brassica napus HOM05D007702 ORTHO05D009736 2.2e-45 187.2 171 60.8
BolC6t35738H Brassica oleracea HOM05D007702 ORTHO05D009736 2.2e-45 187.2 171 60.8
Gohir.D10G002100 Gossypium hirsutum HOM05D007702 ORTHO05D009736 2.2e-45 187.2 175 57.1
CARHR041100 Cardamine hirsuta HOM05D007702 ORTHO05D009736 2.9e-45 186.8 137 66.4
Carub.0001s3998 Capsella rubella HOM05D007702 ORTHO05D009736 3.8e-45 186.4 147 61.9
Ca_00991_v3 Cicer arietinum L. HOM05D007702 ORTHO05D009736 3.8e-45 186.4 130 66.9
Aa31LG10G3400 Aethionema arabicum HOM05D007702 ORTHO05D009736 5.0e-45 186.0 137 67.2
BraA06t23478Z Brassica rapa HOM05D007702 ORTHO05D009736 6.5e-45 185.7 262 43.9
Thecc.06G057000 Theobroma cacao HOM05D007702 ORTHO05D009736 6.5e-45 185.7 268 44.4
Cpa.g.sc155.12 Carica papaya HOM05D007702 ORTHO05D009736 1.4e-44 184.5 158 59.5
Sp1g37800 Schrenkiella parvula HOM05D007702 ORTHO05D009736 2.5e-44 183.7 178 58.4
AL1G58880 Arabidopsis lyrata HOM05D007702 ORTHO05D009736 3.2e-44 183.3 173 57.8
Gohir.A10G002000 Gossypium hirsutum HOM05D007702 ORTHO05D009736 4.2e-44 183.0 204 51.5
Gorai.011G002500 Gossypium raimondii HOM05D007702 ORTHO05D009736 5.5e-44 182.6 146 61.0
RcHm_v2.0_Chr2g0149381 Rosa chinensis HOM05D007702 ORTHO05D009736 9.3e-44 181.8 132 65.2
Sc12g0011180 Simmondsia chinensis HOM05D007715 ORTHO05D009760 9.3e-44 181.8 321 37.7
FvH4_6g36940 Fragaria vesca HOM05D007702 ORTHO05D009736 2.7e-43 180.3 130 67.7
FAN14G5785 Fragaria x ananassa HOM05D007715 ORTHO05D009760 2.7e-43 180.3 130 67.7
Medtr2g101430 Medicago truncatula HOM05D007702 ORTHO05D009736 3.5e-43 179.9 134 65.7
CsaV3_7G033690 Cucumis sativus L. HOM05D007702 ORTHO05D009736 1.3e-42 177.9 138 63.0
MELO3C024282.2 Cucumis melo HOM05D007702 ORTHO05D009736 2.3e-42 177.2 120 69.2
SGA_v2.0_scaffold71G23985 Striga asiatica HOM05D007702 ORTHO05D009736 2.3e-42 177.2 134 62.7
arahy.Tifrunner.gnm1.ann1.TT2UX9 Arachis hypogaea HOM05D007702 ORTHO05D009736 6.7e-42 175.6 121 66.1
unitig_748.g7485 Utricularia gibba HOM05D007702 ORTHO05D009736 6.7e-42 175.6 179 53.1
ClCG09G001650 Citrullus lanatus HOM05D007702 ORTHO05D009736 8.7e-42 175.3 169 53.3
FAN05G4144 Fragaria x ananassa HOM05D007715 ORTHO05D009760 8.7e-42 175.3 120 68.3
THA.LOC104817895 Tarenaya hassleriana HOM05D007702 ORTHO05D009736 8.7e-42 175.3 186 52.2
Atru.chr1.2666 Acer truncatum HOM05D007702 ORTHO05D009736 1.1e-41 174.9 135 60.0
FAN02G3529 Fragaria x ananassa HOM05D007715 ORTHO05D009760 1.5e-41 174.5 188 49.5
GSVIVG01029550001 Vitis vinifera HOM05D007702 ORTHO05D009736 2.5e-41 173.7 134 64.2
QL12p001257 Quercus lobata HOM05D007702 ORTHO05D009736 9.7e-41 171.8 300 38.3
Psat5g305320 Pisum sativum HOM05D007702 ORTHO05D009736 1.6e-40 171.0 127 65.4
Oeu049633.1 Olea europaea HOM05D007702 ORTHO05D009736 2.2e-40 170.6 108 72.2
PSO144G0036 Papaver somniferum HOM05D007702 ORTHO05D009736 1.1e-39 168.3 188 50.5
Lsat_1_v5_gn_1_39381 Lactuca sativa HOM05D007702 ORTHO05D009736 1.4e-39 167.9 164 51.8
PSO423G0097 Papaver somniferum HOM05D007702 ORTHO05D009736 1.4e-39 167.9 119 64.7
ATR1126G014 Amborella trichopoda HOM05D007702 ORTHO05D009736 9.0e-39 165.2 148 56.8
COL.COLO4_31154 Corchorus olitorius HOM05D007702 ORTHO05D009736 4.2e-36 156.4 162 54.9
SalBow6G4959 Salvia bowleyana HOM05D007702 ORTHO05D009736 3.0e-34 150.2 121 61.2
Os03g0138900 Oryza sativa ssp. japonica HOM05D007702 ORTHO05D009736 6.7e-34 149.1 135 53.3
Aa31LG6G10000 Aethionema arabicum HOM05D007702 ORTHO05D009736 8.8e-34 148.7 129 57.4
ECA236G1927 Erigeron canadensis HOM05D007702 ORTHO05D009736 2.8e-32 143.7 128 53.1
vmacro18744 Vaccinium macrocarpon HOM05D007702 ORTHO05D009736 6.3e-32 142.5 120 50.8
Pp3c5_18880 Physcomitrium patens HOM05D007702 ORTHO05D009736 8.2e-32 142.1 126 54.8
Gorai.011G091300 Gossypium raimondii HOM05D007702 ORTHO05D009736 7.7e-30 135.6 102 65.7
Rhsim08G0250300 Rhododendron simsii HOM05D007702 ORTHO05D009736 8.5e-29 132.1 259 37.5
Mapoly0020s0094 Marchantia polymorpha HOM05D007702 ORTHO05D009736 3.6e-27 126.7 157 43.3
Aa31LG3G5120 Aethionema arabicum HOM05D007702 ORTHO05D009736 7.9e-27 125.6 106 59.4
SEGI_14624 Sequoiadendron giganteum HOM05D007702 ORTHO05D009736 5.7e-25 119.4 198 35.4
AagrBONN_evm.TU.Sc2ySwM_228.5746 Anthoceros agrestis HOM05D007702 ORTHO05D009736 1.3e-24 118.2 216 36.1
EL10Ac3g06847 Beta vulgaris HOM05D000495 ORTHO05D009736 1.7e-24 117.9 122 54.1
FAN09G0474 Fragaria x ananassa HOM05D007715 ORTHO05D009760 9.1e-23 112.1 130 46.9
Zm00001eb230260 Zea mays HOM05D007702 ORTHO05D009736 3.8e-21 106.7 123 45.5
Dinv37777 Davidia involucrata HOM05D000532 ORTHO05D002745 8.8e-10 68.9 45 71.1
FAN07G0391 Fragaria x ananassa HOM05D007702 ORTHO05D009736 8.8e-10 68.9 41 73.2
FAN10G3703 Fragaria x ananassa HOM05D007702 ORTHO05D009736 1.2e-09 68.6 41 70.7
Actinidia21654 Actinidia chinensis HOM05D007715 ORTHO05D009760 1.3e-08 65.1 56 58.9
AL3G14490 Arabidopsis lyrata HOM05D007702 ORTHO05D009736 1.4e-07 61.6 59 50.8
FAN02G1843 Fragaria x ananassa HOM05D007702 ORTHO05D009736 1.2e-06 58.5 41 63.4


User provided reference genes

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