Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR383G0493 Trochodendron aralioides HOM05D005730 ORTHO05D007038 1.9e-36 155.2 72 100.0
Thhalv10017500m.g Eutrema salsugineum HOM05D005730 ORTHO05D007038 2.5e-33 144.8 72 88.9
Sp4g13950 Schrenkiella parvula HOM05D005730 ORTHO05D007038 2.5e-33 144.8 72 88.9
Thecc.06G194900 Theobroma cacao HOM05D005730 ORTHO05D007038 3.3e-33 144.4 72 86.1
AL4G26750 Arabidopsis lyrata HOM05D005730 ORTHO05D007038 4.3e-33 144.1 72 87.5
AT2G31490 Arabidopsis thaliana HOM05D005730 ORTHO05D007038 4.3e-33 144.1 72 87.5
BcaC02g07993 Brassica carinata HOM05D005730 ORTHO05D007038 4.3e-33 144.1 72 87.5
A03p17640 Brassica napus HOM05D005730 ORTHO05D007038 4.3e-33 144.1 72 87.5
A04p24230 Brassica napus HOM05D005730 ORTHO05D007038 4.3e-33 144.1 72 87.5
C03p20730 Brassica napus HOM05D005730 ORTHO05D007038 4.3e-33 144.1 72 87.5
BolC3t14450H Brassica oleracea HOM05D005730 ORTHO05D007038 4.3e-33 144.1 72 87.5
BolC4t23397H Brassica oleracea HOM05D005730 ORTHO05D007038 4.3e-33 144.1 72 87.5
BolC4t27587H Brassica oleracea HOM05D005730 ORTHO05D007038 4.3e-33 144.1 72 87.5
BraA03t11029Z Brassica rapa HOM05D005730 ORTHO05D007038 4.3e-33 144.1 72 87.5
Carub.0004s1281 Capsella rubella HOM05D005730 ORTHO05D007038 4.3e-33 144.1 72 87.5
CARHR125130 Cardamine hirsuta HOM05D005730 ORTHO05D007038 4.3e-33 144.1 72 87.5
Prupe.1G065800 Prunus persica HOM05D005730 ORTHO05D007038 4.3e-33 144.1 72 87.5
MD16G1239700 Malus domestica HOM05D005730 ORTHO05D007038 7.4e-33 143.3 72 87.5
Atru.chr10.916 Acer truncatum HOM05D005730 ORTHO05D007038 9.6e-33 142.9 72 86.1
Atru.chr10.931 Acer truncatum HOM05D005730 ORTHO05D007038 9.6e-33 142.9 72 86.1
Gohir.D03G138800 Gossypium hirsutum HOM05D005730 ORTHO05D007038 1.3e-32 142.5 72 86.1
Gorai.003G145600 Gossypium raimondii HOM05D005730 ORTHO05D007038 1.3e-32 142.5 72 86.1
THA.LOC104815318 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 1.3e-32 142.5 72 87.5
THA.LOC109116496 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 1.3e-32 142.5 72 87.5
THA.LOC109117265 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 1.3e-32 142.5 72 87.5
Aqoxy7G02690 Aquilegia oxysepala HOM05D005730 ORTHO05D007038 2.1e-32 141.7 72 84.7
Cfa020734 Carpinus fangiana HOM05D005730 ORTHO05D007038 2.8e-32 141.4 72 86.1
Manes.11G087000 Manihot esculenta HOM05D005730 ORTHO05D007038 2.8e-32 141.4 72 87.5
Ah.10g033660 Amaranthus hybridus HOM05D005730 ORTHO05D007038 4.8e-32 140.6 72 84.7
FvH4_4g06270 Fragaria vesca HOM05D005730 ORTHO05D007038 4.8e-32 140.6 72 80.6
FAN12G2290 Fragaria x ananassa HOM05D005730 ORTHO05D007038 4.8e-32 140.6 72 80.6
Gohir.A03G029700 Gossypium hirsutum HOM05D005730 ORTHO05D007038 4.8e-32 140.6 72 84.7
RcHm_v2.0_Chr4g0397991 Rosa chinensis HOM05D005730 ORTHO05D007038 4.8e-32 140.6 72 80.6
Cc00_g00480 Coffea canephora HOM05D005730 ORTHO05D007038 8.1e-32 139.8 72 83.3
PGR142G0999 Punica granatum HOM05D005730 ORTHO05D007038 8.1e-32 139.8 72 83.3
CSS0014288 Camellia sinensis var. sinensis HOM05D005730 ORTHO05D007038 1.1e-31 139.4 72 86.1
Ciclev10010105m.g Citrus clementina HOM05D005730 ORTHO05D007038 1.1e-31 139.4 72 84.7
MD13G1234900 Malus domestica HOM05D005730 ORTHO05D007038 1.1e-31 139.4 72 84.7
Manes.04G088600 Manihot esculenta HOM05D005730 ORTHO05D007038 1.8e-31 138.7 72 86.1
Phvul.004G177400 Phaseolus vulgaris HOM05D005730 ORTHO05D007038 4.0e-31 137.5 72 81.9
CiPaw.16G103100 Carya illinoinensis HOM05D005730 ORTHO05D007038 5.3e-31 137.1 72 84.7
Aa31LG5G7440 Aethionema arabicum HOM05D005730 ORTHO05D007038 6.9e-31 136.7 72 80.6
Sc09g0007480 Simmondsia chinensis HOM05D005730 ORTHO05D007038 6.9e-31 136.7 72 83.3
BcaB01g04043 Brassica carinata HOM05D005730 ORTHO05D007038 9.0e-31 136.3 68 88.2
BcaB02g10394 Brassica carinata HOM05D005730 ORTHO05D007038 9.0e-31 136.3 68 88.2
Duzib177G0654 Durio zibethinus HOM05D005730 ORTHO05D007038 9.0e-31 136.3 72 86.1
Eucgr.D02622 Eucalyptus grandis HOM05D005730 ORTHO05D007038 9.0e-31 136.3 72 80.6
Actinidia38519 Actinidia chinensis HOM05D005730 ORTHO05D007038 1.2e-30 136.0 72 80.6
ClCG06G014030 Citrullus lanatus HOM05D005730 ORTHO05D007038 1.2e-30 136.0 69 82.6
Potri.006G077400 Populus trichocarpa HOM05D005730 ORTHO05D007038 1.2e-30 136.0 72 83.3
BcaB06g28537 Brassica carinata HOM05D005730 ORTHO05D007038 1.5e-30 135.6 68 86.8
QL11p009271 Quercus lobata HOM05D005730 ORTHO05D007038 2.0e-30 135.2 71 83.1
Duzib170G0040 Durio zibethinus HOM05D005730 ORTHO05D007038 2.6e-30 134.8 72 81.9
Lj2g0002952 Lotus japonicus HOM05D005730 ORTHO05D007038 2.6e-30 134.8 72 83.3
SGA_v2.0_scaffold143G35734 Striga asiatica HOM05D005730 ORTHO05D007038 2.6e-30 134.8 70 84.3
VMungo0464G0384 Vigna mungo HOM05D002151 ORTHO05D002142 2.6e-30 134.8 71 81.7
TPR.G21357 Trifolium pratense HOM05D005730 ORTHO05D007038 3.4e-30 134.4 70 82.9
CANSAT01G0847 Cannabis sativa HOM05D005730 ORTHO05D007038 4.5e-30 134.0 72 77.8
Dinv06659 Davidia involucrata HOM05D005730 ORTHO05D007038 4.5e-30 134.0 72 83.3
Glyma.07G130200 Glycine max HOM05D005730 ORTHO05D007038 4.5e-30 134.0 72 80.6
Nn2g12785 Nelumbo nucifera HOM05D005730 ORTHO05D007038 4.5e-30 134.0 72 81.9
CDE06G0649 Ceratophyllum demersum HOM05D005730 ORTHO05D007038 7.6e-30 133.3 72 79.2
RcHm_v2.0_Chr6g0293611 Rosa chinensis HOM05D005730 ORTHO05D007038 7.6e-30 133.3 72 77.8
CsaV3_1G004610 Cucumis sativus L. HOM05D005730 ORTHO05D007038 2.2e-29 131.7 72 80.6
Phvul.010G060700 Phaseolus vulgaris HOM05D005730 ORTHO05D007038 2.2e-29 131.7 72 79.2
MELO3C017388.2 Cucumis melo HOM05D005730 ORTHO05D007038 3.8e-29 131.0 72 79.2
GSVIVG01029731001 Vitis vinifera HOM05D005730 ORTHO05D007038 3.8e-29 131.0 72 77.8
Zm00001eb368480 Zea mays HOM05D005730 ORTHO05D007038 3.8e-29 131.0 72 77.8
Migut.L00209 Erythranthe guttata HOM05D005730 ORTHO05D007038 4.9e-29 130.6 70 81.4
Lsat_1_v5_gn_7_59680 Lactuca sativa HOM05D005730 ORTHO05D007038 4.9e-29 130.6 71 78.9
Os01g0732100 Oryza sativa ssp. japonica HOM05D005730 ORTHO05D007038 6.5e-29 130.2 72 77.8
arahy.Tifrunner.gnm1.ann1.YLZA1F Arachis hypogaea HOM05D005730 ORTHO05D007038 8.4e-29 129.8 72 79.2
Os01g0750800 Oryza sativa ssp. japonica HOM05D005730 ORTHO05D007038 8.4e-29 129.8 72 76.4
PSO063G5181 Papaver somniferum HOM05D005730 ORTHO05D007038 1.1e-28 129.4 70 77.1
Psat1g051120 Pisum sativum HOM05D005730 ORTHO05D007038 1.1e-28 129.4 70 77.1
Sed0021240 Sechium edule HOM05D005730 ORTHO05D007038 1.1e-28 129.4 71 81.7
arahy.Tifrunner.gnm1.ann1.8U1ME7 Arachis hypogaea HOM05D005730 ORTHO05D007038 1.4e-28 129.0 72 79.2
HanXRQChr03g0064531 Helianthus annuus HOM05D005730 ORTHO05D007038 1.4e-28 129.0 71 74.6
HanXRQChr09g0243241 Helianthus annuus HOM05D005730 ORTHO05D007038 1.4e-28 129.0 71 74.6
PSO170G3580 Papaver somniferum HOM05D005730 ORTHO05D007038 1.4e-28 129.0 70 77.1
unitig_26.g9132 Utricularia gibba HOM05D005730 ORTHO05D007038 1.4e-28 129.0 70 81.4
Migut.J00829 Erythranthe guttata HOM05D005730 ORTHO05D007038 1.9e-28 128.6 70 80.0
ECA240G4690 Erigeron canadensis HOM05D005730 ORTHO05D007038 5.5e-28 127.1 71 74.6
Nitab4.5_0004188g0020 Nicotiana tabacum HOM05D005730 ORTHO05D007038 2.7e-27 124.8 71 73.2
FAN07G1689 Fragaria x ananassa HOM05D005730 ORTHO05D007038 7.9e-27 123.2 107 55.1
FAN22G1024 Fragaria x ananassa HOM05D005730 ORTHO05D007038 1.0e-26 122.9 107 54.2
Lalb_Chr14g0361711 Lupinus albus HOM05D005730 ORTHO05D007038 3.0e-26 121.3 72 73.6
Sopen05g027690 Solanum pennellii HOM05D005730 ORTHO05D007038 3.0e-26 121.3 71 70.4
RcHm_v2.0_Chr6g0293601 Rosa chinensis HOM05D005730 ORTHO05D007038 3.9e-26 120.9 68 73.5
TAR626G1073 Trochodendron aralioides HOM05D005730 ORTHO05D007038 3.9e-26 120.9 71 76.1
TWI63G0907 Tripterygium wilfordii HOM05D005730 ORTHO05D007038 1.1e-25 119.4 70 70.0
HPP92_021358 Vanilla planifolia HOM05D005730 ORTHO05D007038 2.5e-25 118.2 72 75.0
Zm00001eb370910 Zea mays HOM05D005730 ORTHO05D007038 3.3e-25 117.9 72 73.6
SHI37948 Sapria himalayana HOM05D005730 ORTHO05D007038 3.7e-24 114.4 67 74.6
BraA05t20340Z Brassica rapa HOM05D000059 ORTHO05D000528 6.2e-24 113.6 56 87.5
Cpa.g.sc115.33 Carica papaya HOM05D005730 ORTHO05D007038 6.2e-24 113.6 59 81.4
BcaC02g11258 Brassica carinata HOM05D005730 ORTHO05D007038 8.2e-24 113.2 56 87.5
C04p60960 Brassica napus HOM05D005730 ORTHO05D007038 8.2e-24 113.2 56 87.5
BraA04t17942Z Brassica rapa HOM05D000059 ORTHO05D000528 8.2e-24 113.2 56 87.5
A05p14120 Brassica napus HOM05D005730 ORTHO05D007038 1.4e-23 112.5 56 87.5
Sabra06G0058600 Salix brachista HOM05D005730 ORTHO05D007038 1.8e-23 112.1 114 50.0
DCAR_019791 Daucus carota HOM05D005730 ORTHO05D007038 4.0e-23 110.9 56 85.7
Peaxi162Scf00320g00055 Petunia axillaris HOM05D005730 ORTHO05D007038 4.0e-23 110.9 61 78.7
FAN17G0140 Fragaria x ananassa HOM05D005730 ORTHO05D007038 5.3e-23 110.5 63 71.4
AUR62020709 Chenopodium quinoa HOM05D005730 ORTHO05D007038 6.9e-23 110.2 63 74.6
FAN17G1913 Fragaria x ananassa HOM05D005730 ORTHO05D007038 9.0e-23 109.8 57 77.2
COL.COLO4_33448 Corchorus olitorius HOM05D005730 ORTHO05D007038 2.0e-22 108.6 56 82.1
Peaxi162Scf00204g00039 Petunia axillaris HOM05D005730 ORTHO05D007038 2.0e-22 108.6 66 71.2
EL10Ac2g03641 Beta vulgaris HOM05D005730 ORTHO05D007038 2.6e-22 108.2 56 82.1
AUR62028015 Chenopodium quinoa HOM05D005730 ORTHO05D007038 4.5e-22 107.5 56 80.4
Nitab4.5_0000413g0090 Nicotiana tabacum HOM05D005730 ORTHO05D007038 5.8e-22 107.1 56 83.9
Nitab4.5_0005014g0020 Nicotiana tabacum HOM05D001912 ORTHO05D001975 5.8e-22 107.1 56 83.9
FAN11G1086 Fragaria x ananassa HOM05D005730 ORTHO05D007038 1.7e-21 105.5 56 76.8
Ca_25629_v3 Cicer arietinum L. HOM05D005730 ORTHO05D007038 3.8e-21 104.4 57 77.2
vmacro20778 Vaccinium macrocarpon HOM05D005730 ORTHO05D007038 3.8e-21 104.4 58 74.1
Medtr6g093010 Medicago truncatula HOM05D005730 ORTHO05D007038 1.9e-20 102.1 56 76.8
Peaxi162Scf00906g00224 Petunia axillaris HOM05D005730 ORTHO05D007038 1.9e-20 102.1 56 78.6
ATR0568G059 Amborella trichopoda HOM05D005730 ORTHO05D007038 2.5e-20 101.7 56 80.4
Hund03236 Selenicereus undatus HOM05D005730 ORTHO05D007038 4.2e-20 100.9 56 78.6
Solyc05g046390.3 Solanum lycopersicum HOM05D005730 ORTHO05D007038 4.2e-20 100.9 56 76.8
Hma1.2p1_0314F.1_g121950 Hydrangea macrophylla HOM05D005730 ORTHO05D007038 7.1e-20 100.1 52 80.8
PGSC0003DMG400013688 Solanum tuberosum HOM05D000482 ORTHO05D000349 7.1e-20 100.1 56 76.8
Pp3c25_300 Physcomitrium patens HOM05D005730 ORTHO05D007038 3.5e-19 97.8 71 62.0
FAN28G2060 Fragaria x ananassa HOM05D002523 ORTHO05D002951 1.0e-18 96.3 49 79.6
SalBow6G6230 Salvia bowleyana HOM05D005730 ORTHO05D007038 1.3e-18 95.9 52 80.8
HanXRQChr13g0388231 Helianthus annuus HOM05D005730 ORTHO05D007038 3.0e-18 94.7 56 71.4
Migut.L00210 Erythranthe guttata HOM05D005730 ORTHO05D007038 6.7e-18 93.6 54 74.1
Pp3c16_220 Physcomitrium patens HOM05D005730 ORTHO05D007038 4.3e-17 90.9 71 57.7
SEGI_08291 Sequoiadendron giganteum HOM05D005730 ORTHO05D007038 5.7e-17 90.5 56 67.9
Lj5A722T6 Lonicera japonica HOM05D005730 ORTHO05D007038 4.8e-16 87.4 44 86.4
Solyc09g059220.1 Solanum lycopersicum HOM05D005730 ORTHO05D007038 4.8e-16 87.4 69 55.1
MELO3C019212.2 Cucumis melo HOM05D005730 ORTHO05D007038 5.3e-15 84.0 52 71.2
CDE02G1938 Ceratophyllum demersum HOM05D005730 ORTHO05D007038 4.5e-14 80.9 42 78.6
CBR_g40455 Chara braunii HOM05D005730 ORTHO05D007038 1.3e-13 79.3 68 51.5
Migut.K01179 Erythranthe guttata HOM05D005730 ORTHO05D007038 1.3e-13 79.3 50 68.0
Mapoly0005s0214 Marchantia polymorpha HOM05D005730 ORTHO05D007038 1.7e-13 79.0 72 48.6
MCO07G159 Micromonas commoda HOM05D005730 ORTHO05D007038 9.4e-12 73.2 65 49.2
SMO141G0046 Selaginella moellendorffii HOM05D005730 ORTHO05D007038 7.9e-11 70.1 71 43.7
SHI03111 Sapria himalayana HOM05D005730 ORTHO05D007038 1.8e-10 68.9 50 68.0
Mapoly0005s0215 Marchantia polymorpha HOM05D005730 ORTHO05D007038 7.4e-09 63.5 56 46.4
Medtr8g107150 Medicago truncatula HOM05D005730 ORTHO05D007038 1.5e-06 55.8 32 71.9


User provided reference genes

Program Settings