Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR383G0486 Trochodendron aralioides HOM05D006152 ORTHO05D008137 4.2e-56 221.1 109 100.0
Haze_19246 Corylus avellana HOM05D006152 ORTHO05D008137 7.5e-37 157.1 105 74.3
QL02p092448 Quercus lobata HOM05D006152 ORTHO05D008137 2.2e-36 155.6 104 71.2
QL02p092408 Quercus lobata HOM05D006152 ORTHO05D008137 4.8e-36 154.5 101 73.3
CiPaw.16G115700 Carya illinoinensis HOM05D006152 ORTHO05D008137 1.4e-35 152.9 104 73.1
TWI32G1323 Tripterygium wilfordii HOM05D006152 ORTHO05D008137 5.9e-34 147.5 104 67.3
RcHm_v2.0_Chr2g0086151 Rosa chinensis HOM05D006152 ORTHO05D008137 3.8e-33 144.8 104 68.3
Actinidia38346 Actinidia chinensis HOM05D006152 ORTHO05D008137 8.5e-33 143.7 103 69.9
CSS0025720 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 9.4e-32 140.2 104 67.3
Potri.006G188200 Populus trichocarpa HOM05D006152 ORTHO05D008137 9.4e-32 140.2 104 63.5
Hma1.2p1_0222F.1_g093210 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 1.2e-31 139.8 110 64.5
Aqoxy1G03917 Aquilegia oxysepala HOM05D006152 ORTHO05D008137 1.4e-30 136.3 102 66.7
CSS0018805 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 2.3e-30 135.6 104 67.3
Ciclev10008799m.g Citrus clementina HOM05D006152 ORTHO05D008137 3.0e-30 135.2 101 66.3
Nn2g12295 Nelumbo nucifera HOM05D006152 ORTHO05D008137 4.0e-30 134.8 109 65.1
Rhsim01G0046600 Rhododendron simsii HOM05D006152 ORTHO05D008137 4.0e-30 134.8 105 62.9
FAN23G2003 Fragaria x ananassa HOM05D006152 ORTHO05D008137 6.8e-30 134.0 104 62.5
Oeu043492.1 Olea europaea HOM05D006152 ORTHO05D008137 6.8e-30 134.0 100 68.0
FvH4_1g01320 Fragaria vesca HOM05D006152 ORTHO05D008137 8.8e-30 133.7 104 62.5
FAN28G1911 Fragaria x ananassa HOM05D006152 ORTHO05D008137 8.8e-30 133.7 104 62.5
vmacro13046 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 1.5e-29 132.9 106 63.2
vmacro23231 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 1.5e-29 132.9 106 63.2
Rhsim01G0042700 Rhododendron simsii HOM05D006152 ORTHO05D008137 2.0e-29 132.5 105 61.9
Manes.06G038100 Manihot esculenta HOM05D006152 ORTHO05D008137 9.8e-29 130.2 104 58.7
Sabra06G0143900 Salix brachista HOM05D006152 ORTHO05D008137 9.8e-29 130.2 98 64.3
Sabra06G0145100 Salix brachista HOM05D006152 ORTHO05D008137 9.8e-29 130.2 98 64.3
Glyma.13G155700 Glycine max HOM05D006152 ORTHO05D008137 1.7e-28 129.4 102 64.7
Thecc.09G035000 Theobroma cacao HOM05D006152 ORTHO05D008137 3.7e-28 128.3 102 63.7
GSVIVG01001075001 Vitis vinifera HOM05D006152 ORTHO05D008137 3.7e-28 128.3 102 63.7
Cpa.g.sc46.115 Carica papaya HOM05D006152 ORTHO05D008137 4.8e-28 127.9 101 62.4
COL.COLO4_18762 Corchorus olitorius HOM05D006152 ORTHO05D008137 1.1e-27 126.7 105 60.0
MD02G1011000 Malus domestica HOM05D006152 ORTHO05D008137 1.1e-27 126.7 104 63.5
Lj7A453G70 Lonicera japonica HOM05D006152 ORTHO05D008137 2.4e-27 125.6 104 59.6
MBI15_g30906_MAGBIO Magnolia biondii HOM05D006152 ORTHO05D008137 5.4e-27 124.4 102 64.7
Duzib168G0440 Durio zibethinus HOM05D006152 ORTHO05D008137 9.1e-27 123.6 105 61.0
VMungo1215G1041 Vigna mungo HOM05D006152 ORTHO05D008137 1.2e-26 123.2 101 62.4
Gohir.D05G052200 Gossypium hirsutum HOM05D006152 ORTHO05D008137 4.5e-26 121.3 105 61.9
Prupe.7G259100 Prunus persica HOM05D006152 ORTHO05D008137 7.7e-26 120.6 104 59.6
Eucgr.C00382 Eucalyptus grandis HOM05D006152 ORTHO05D008137 1.3e-25 119.8 99 62.6
PSO339G6042 Papaver somniferum HOM05D006152 ORTHO05D008137 1.3e-25 119.8 104 63.5
MD15G1156000 Malus domestica HOM05D006152 ORTHO05D008137 2.3e-25 119.0 103 61.2
PSO384G3563 Papaver somniferum HOM05D006152 ORTHO05D008137 2.3e-25 119.0 106 65.1
PSO384G4708 Papaver somniferum HOM05D006152 ORTHO05D008137 2.3e-25 119.0 106 65.1
TPR.G6509 Trifolium pratense HOM05D006152 ORTHO05D008137 2.3e-25 119.0 101 58.4
Phvul.003G158400 Phaseolus vulgaris HOM05D006152 ORTHO05D008137 2.9e-25 118.6 101 60.4
HanXRQChr10g0314551 Helianthus annuus HOM05D006152 ORTHO05D008137 3.8e-25 118.2 102 61.8
Lalb_Chr12g0198561 Lupinus albus HOM05D006152 ORTHO05D008137 3.8e-25 118.2 101 59.4
MSTRG.26302 Avicennia marina HOM05D006152 ORTHO05D008137 5.0e-25 117.9 100 60.0
Cc06_g15390 Coffea canephora HOM05D006152 ORTHO05D008137 5.0e-25 117.9 101 57.4
Gorai.009G054000 Gossypium raimondii HOM05D006152 ORTHO05D008137 6.5e-25 117.5 105 60.0
Gohir.A05G050600 Gossypium hirsutum HOM05D006152 ORTHO05D008137 8.6e-25 117.1 105 60.0
Medtr4g131670 Medicago truncatula HOM05D006152 ORTHO05D008137 8.6e-25 117.1 101 57.4
CsaV3_2G003440 Cucumis sativus L. HOM05D006152 ORTHO05D008137 3.3e-24 115.2 103 52.4
Ca_21103_v3 Cicer arietinum L. HOM05D006152 ORTHO05D008137 9.5e-24 113.6 102 57.8
unitig_899.g15450 Utricularia gibba HOM05D006152 ORTHO05D003911 1.6e-23 112.8 110 54.5
MELO3C004453.2 Cucumis melo HOM05D006152 ORTHO05D008137 2.8e-23 112.1 103 50.5
Sed0008154 Sechium edule HOM05D006152 ORTHO05D008137 2.8e-23 112.1 102 54.9
Sopen07g001260 Solanum pennellii HOM05D006152 ORTHO05D008137 2.8e-23 112.1 108 57.4
Nitab4.5_0001094g0060 Nicotiana tabacum HOM05D006152 ORTHO05D008137 3.6e-23 111.7 106 58.5
Solyc07g005120.3 Solanum lycopersicum HOM05D006152 ORTHO05D008137 4.7e-23 111.3 108 55.6
PGSC0003DMG400003198 Solanum tuberosum HOM05D006152 ORTHO05D008137 4.7e-23 111.3 106 59.4
Nitab4.5_0003856g0050 Nicotiana tabacum HOM05D006152 ORTHO05D008137 6.1e-23 110.9 106 57.5
DCAR_019366 Daucus carota HOM05D006152 ORTHO05D008137 8.0e-23 110.5 107 57.0
Migut.K00351 Erythranthe guttata HOM05D006152 ORTHO05D008137 1.4e-22 109.8 106 54.7
Lj4g0021784 Lotus japonicus HOM05D006152 ORTHO05D008137 1.4e-22 109.8 101 53.5
arahy.Tifrunner.gnm1.ann1.L77CZK Arachis hypogaea HOM05D006152 ORTHO05D008137 1.8e-22 109.4 102 55.9
arahy.Tifrunner.gnm1.ann1.QAR9AW Arachis hypogaea HOM05D006152 ORTHO05D008137 1.8e-22 109.4 102 55.9
CAN.G520.14 Capsicum annuum HOM05D006152 ORTHO05D008137 1.8e-22 109.4 108 57.4
Potri.018G111500 Populus trichocarpa HOM05D006152 ORTHO05D008137 1.8e-22 109.4 91 57.1
ClCG11G003570 Citrullus lanatus HOM05D006152 ORTHO05D008137 2.3e-22 109.0 105 49.5
SGA_v2.0_scaffold387G50519 Striga asiatica HOM05D006152 ORTHO05D008137 2.3e-22 109.0 100 55.0
Peaxi162Scf00347g00517 Petunia axillaris HOM05D006152 ORTHO05D008137 8.9e-22 107.1 106 55.7
TPR.G37046 Trifolium pratense HOM05D006152 ORTHO05D008137 2.6e-21 105.5 101 56.4
Psat4g007440 Pisum sativum HOM05D006152 ORTHO05D008137 3.4e-21 105.1 98 55.1
CDE05G0292 Ceratophyllum demersum HOM05D006152 ORTHO05D008137 2.2e-20 102.4 107 50.5
ATR0184G013 Amborella trichopoda HOM05D006152 ORTHO05D008137 3.7e-20 101.7 101 46.5
Sc14g0000030 Simmondsia chinensis HOM05D006152 ORTHO05D008137 8.3e-20 100.5 109 52.3
PGR142G2956 Punica granatum HOM05D006152 ORTHO05D008137 1.4e-19 99.8 100 49.0
Ah.04g162170 Amaranthus hybridus HOM05D006152 ORTHO05D008137 1.8e-19 99.4 106 45.3
Sp6g19860 Schrenkiella parvula HOM05D006152 ORTHO05D008137 1.2e-18 96.7 103 49.5
Lsat_1_v5_gn_5_90820 Lactuca sativa HOM05D006152 ORTHO05D008137 3.5e-18 95.1 112 51.8
CARHR272000 Cardamine hirsuta HOM05D006152 ORTHO05D008137 2.3e-17 92.4 103 49.5
EL10Ac8g18846 Beta vulgaris HOM05D006152 ORTHO05D008137 3.3e-16 88.6 105 49.5
Thhalv10014084m.g Eutrema salsugineum HOM05D006152 ORTHO05D008137 5.6e-16 87.8 105 48.6
AUR62017200 Chenopodium quinoa HOM05D006152 ORTHO05D008137 7.3e-16 87.4 102 44.1
THA.LOC104811841 Tarenaya hassleriana HOM05D006152 ORTHO05D008137 2.1e-15 85.9 105 48.6
Carub.0008s1874 Capsella rubella HOM05D006152 ORTHO05D008137 3.6e-15 85.1 106 47.2
CARHR032820 Cardamine hirsuta HOM05D006152 ORTHO05D008137 3.6e-15 85.1 103 47.6
AL8G34300 Arabidopsis lyrata HOM05D006152 ORTHO05D008137 6.1e-15 84.3 102 47.1
Os06g0182400 Oryza sativa ssp. japonica HOM05D006152 ORTHO05D008137 6.1e-15 84.3 109 44.0
Hund21620 Selenicereus undatus HOM05D006152 ORTHO05D008137 1.0e-14 83.6 103 46.6
AT5G58200 Arabidopsis thaliana HOM05D006152 ORTHO05D008137 1.4e-14 83.2 102 46.1
C02p13510 Brassica napus HOM05D006152 ORTHO05D008137 4.0e-14 81.6 102 44.1
BolC2t07463H Brassica oleracea HOM05D006152 ORTHO05D008137 4.0e-14 81.6 102 44.1
BcaB05g22408 Brassica carinata HOM05D006152 ORTHO05D008137 5.2e-14 81.3 102 43.1
A02p07870 Brassica napus HOM05D006152 ORTHO05D008137 1.2e-13 80.1 102 44.1
BraA02t05860Z Brassica rapa HOM05D006152 ORTHO05D008137 1.2e-13 80.1 102 44.1
SEGI_04227 Sequoiadendron giganteum HOM05D006152 ORTHO05D008137 1.2e-13 80.1 104 47.1
BcaC03g14112 Brassica carinata HOM05D006152 ORTHO05D008137 1.5e-13 79.7 102 43.1
AUR62019760 Chenopodium quinoa HOM05D001472 ORTHO05D002655 2.6e-13 79.0 102 44.1
Hma1.2p1_0222F.1_g093200 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 2.6e-13 79.0 52 75.0
AUR62010759 Chenopodium quinoa HOM05D001472 ORTHO05D002655 7.5e-13 77.4 102 43.1
SalBow1G4451 Salvia bowleyana HOM05D001472 ORTHO05D002655 1.3e-12 76.6 102 43.1
Mapoly0124s0018 Marchantia polymorpha HOM05D006152 ORTHO05D008137 1.6e-10 69.7 109 36.7
Oeu028814.1 Olea europaea HOM05D006152 ORTHO05D008137 3.5e-10 68.6 63 55.6
ECA234G4022 Erigeron canadensis HOM05D000464 ORTHO05D000408 2.5e-08 62.4 46 65.2
SMO347G0290 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 1.1e-06 57.0 101 33.7


User provided reference genes

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