Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR383G0434 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1999.9 985 100.0
TAR625G0099 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1824.7 985 92.5
Nn5g27278 Nelumbo nucifera HOM05D004101 ORTHO05D005221 0.0e+00 1377.8 986 72.3
Dinv05108 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1374.0 987 70.5
Cfa008084 Carpinus fangiana HOM05D004101 ORTHO05D005221 0.0e+00 1343.6 957 71.6
Dinv36168 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1334.3 984 69.1
GSVIVG01036377001 Vitis vinifera HOM05D004101 ORTHO05D005221 0.0e+00 1323.1 986 68.9
CiPaw.03G015400 Carya illinoinensis HOM05D004101 ORTHO05D005221 0.0e+00 1308.1 958 69.4
QL09p002038 Quercus lobata HOM05D004101 ORTHO05D005221 0.0e+00 1301.6 945 69.3
CSS0023016 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1296.2 965 68.4
Ciclev10018750m.g Citrus clementina HOM05D004101 ORTHO05D005221 0.0e+00 1285.0 945 69.3
Actinidia29382 Actinidia chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1280.0 950 69.1
RcHm_v2.0_Chr6g0306901 Rosa chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1272.7 940 69.8
Thecc.08G177600 Theobroma cacao HOM05D004101 ORTHO05D005221 0.0e+00 1271.1 950 68.3
Atru.chr13.2487 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1269.6 948 69.0
Aqoxy6G01398 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1265.8 1005 65.6
Potri.013G099700 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1265.0 947 69.3
Aqoxy2G02197 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1264.6 1005 65.6
Potri.019G072300 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1264.2 945 68.6
Manes.18G117901 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1263.4 962 68.8
Aqoxy6G00101 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1263.1 1004 65.6
Duzib177G1024 Durio zibethinus HOM05D004101 ORTHO05D005221 0.0e+00 1261.1 998 65.7
Gorai.009G267200 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1254.6 948 67.4
Gohir.A05G253700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1252.7 948 67.4
Prupe.1G442600 Prunus persica HOM05D004101 ORTHO05D005221 0.0e+00 1245.0 946 67.5
TWI18G0503 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1243.0 948 66.7
Manes.02G221381 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1237.2 949 67.7
MD15G1088500 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1232.6 937 67.7
Gohir.A02G087700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1226.5 952 66.6
FvH4_2g35070 Fragaria vesca HOM05D004101 ORTHO05D005221 0.0e+00 1225.3 944 67.3
CSS0032109 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1222.2 963 66.5
Gorai.005G116600 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1220.7 953 66.3
arahy.Tifrunner.gnm1.ann1.BP0NKM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1219.5 945 66.7
Lj3g0009901 Lotus japonicus HOM05D004101 ORTHO05D005221 0.0e+00 1219.1 961 65.1
Glyma.09G234500 Glycine max HOM05D004101 ORTHO05D005221 0.0e+00 1216.8 955 66.9
Haze_13953 Corylus avellana HOM05D004101 ORTHO05D005221 0.0e+00 1215.3 1060 62.5
TWI12G0255 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1214.9 963 65.1
PGR042G3616 Punica granatum HOM05D004101 ORTHO05D005221 0.0e+00 1210.3 1004 63.7
CANSAT78G1092 Cannabis sativa HOM05D004101 ORTHO05D005221 0.0e+00 1209.5 968 64.3
Oeu028926.1 Olea europaea HOM05D004101 ORTHO05D005221 0.0e+00 1205.3 958 64.8
Phvul.011G002700 Phaseolus vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1204.9 954 66.1
PSO017G3151 Papaver somniferum HOM05D004101 ORTHO05D005221 0.0e+00 1204.5 943 65.9
VMungo1127G2207 Vigna mungo HOM05D004101 ORTHO05D005221 0.0e+00 1198.3 952 65.8
Lalb_Chr16g0391261 Lupinus albus HOM05D004101 ORTHO05D005221 0.0e+00 1196.8 948 65.0
Ca_19680_v3 Cicer arietinum L. HOM05D004101 ORTHO05D005221 0.0e+00 1196.4 944 66.3
CANSAT21G1017 Cannabis sativa HOM05D004101 ORTHO05D005221 0.0e+00 1194.5 935 65.9
FAN27G2707 Fragaria x ananassa HOM05D004101 ORTHO05D005221 0.0e+00 1192.9 953 65.9
ClCG11G008940 Citrullus lanatus HOM05D004101 ORTHO05D005221 0.0e+00 1188.3 982 62.8
ATR1089G044 Amborella trichopoda HOM05D004101 ORTHO05D005221 0.0e+00 1187.9 1002 63.0
MD08G1108000 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1186.4 952 64.9
arahy.Tifrunner.gnm1.ann1.FM3HJM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1183.3 1034 60.7
Medtr4g033490 Medicago truncatula HOM05D004101 ORTHO05D005221 0.0e+00 1182.9 944 65.1
Solyc01g008320.3 Solanum lycopersicum HOM05D004101 ORTHO05D005221 0.0e+00 1179.9 960 62.2
FAN20G0554 Fragaria x ananassa HOM05D004101 ORTHO05D005221 0.0e+00 1179.1 941 66.3
CsaV3_2G033160 Cucumis sativus L. HOM05D004101 ORTHO05D005221 0.0e+00 1177.9 961 63.3
Psat7g146680 Pisum sativum HOM05D004101 ORTHO05D005221 0.0e+00 1177.9 955 64.2
Sopen01g003840 Solanum pennellii HOM05D004101 ORTHO05D005221 0.0e+00 1177.2 961 62.1
MSTRG.12725 Avicennia marina HOM05D004101 ORTHO05D005221 0.0e+00 1173.7 949 63.2
Sabra13G0085500 Salix brachista HOM05D004101 ORTHO05D005221 0.0e+00 1172.1 1022 61.3
Sed0018643 Sechium edule HOM05D004101 ORTHO05D005221 0.0e+00 1167.9 952 63.7
EL10Ac1g01668 Beta vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1164.8 972 63.5
Aa31LG2G14460 Aethionema arabicum HOM05D004101 ORTHO05D005221 0.0e+00 1159.1 949 62.5
PSO170G4791 Papaver somniferum HOM05D004101 ORTHO05D005221 0.0e+00 1152.5 954 62.7
CARHR287040 Cardamine hirsuta HOM05D004101 ORTHO05D005221 0.0e+00 1151.7 972 61.7
Carub.0001s2990 Capsella rubella HOM05D004101 ORTHO05D005221 0.0e+00 1150.2 970 62.5
Sp1g27280 Schrenkiella parvula HOM05D004101 ORTHO05D005221 0.0e+00 1149.4 954 62.4
BcaB07g32808 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1147.9 971 61.1
Thhalv10006721m.g Eutrema salsugineum HOM05D004101 ORTHO05D005221 0.0e+00 1144.4 956 62.3
Eucgr.F02954 Eucalyptus grandis HOM05D004101 ORTHO05D005221 0.0e+00 1141.7 972 61.5
AT1G31480 Arabidopsis thaliana HOM05D004101 ORTHO05D005221 0.0e+00 1141.3 955 61.6
Sabra19G0083800 Salix brachista HOM05D004101 ORTHO05D005221 0.0e+00 1138.6 1074 58.4
BraA09t39007Z Brassica rapa HOM05D004101 ORTHO05D005221 0.0e+00 1136.7 949 61.6
AL1G49570 Arabidopsis lyrata HOM05D004101 ORTHO05D005221 0.0e+00 1135.9 971 61.0
SGA_v2.0_scaffold120G33012 Striga asiatica HOM05D004101 ORTHO05D005221 0.0e+00 1133.2 1010 59.6
Gohir.D02G102700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1131.7 883 66.7
PSO017G5679 Papaver somniferum HOM05D004101 ORTHO05D005221 0.0e+00 1130.9 938 63.2
C05p30730 Brassica napus HOM05D004101 ORTHO05D005221 0.0e+00 1129.8 957 61.4
BcaC05g27176 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1126.3 957 61.3
BolC5t31805H Brassica oleracea HOM05D004101 ORTHO05D005221 0.0e+00 1126.3 957 61.3
PSO170G4509 Papaver somniferum HOM05D004101 ORTHO05D005221 0.0e+00 1125.9 939 63.4
Aa31LG9G15840 Aethionema arabicum HOM05D004101 ORTHO05D005221 0.0e+00 1122.8 946 61.3
Cc10_g08720 Coffea canephora HOM05D004101 ORTHO05D005221 0.0e+00 1122.5 1012 59.5
Migut.D00784 Erythranthe guttata HOM05D004101 ORTHO05D005221 0.0e+00 1122.5 952 60.8
A08p10530 Brassica napus HOM05D004101 ORTHO05D005221 0.0e+00 1120.9 954 61.2
SalBow2G0849 Salvia bowleyana HOM05D004101 ORTHO05D005221 0.0e+00 1120.1 990 60.4
BraA08t33053Z Brassica rapa HOM05D004101 ORTHO05D005221 0.0e+00 1119.8 952 61.1
Atru.chr13.2489 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1114.4 961 62.1
Lj9A698G58 Lonicera japonica HOM05D004101 ORTHO05D005221 0.0e+00 1109.0 968 60.6
BcaC07g37755 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1105.1 952 60.6
BolC8t48140H Brassica oleracea HOM05D004101 ORTHO05D005221 0.0e+00 1105.1 952 60.6
FAN15G3699 Fragaria x ananassa HOM05D004101 ORTHO05D005221 0.0e+00 1105.1 936 63.2
DCAR_019079 Daucus carota HOM05D004101 ORTHO05D005221 0.0e+00 1104.0 1052 56.2
SGA_v2.0_scaffold158G37476 Striga asiatica HOM05D004101 ORTHO05D005221 0.0e+00 1103.2 992 58.6
HanXRQChr03g0062111 Helianthus annuus HOM05D004101 ORTHO05D005221 0.0e+00 1099.7 942 61.1
Atru.chr13.2501 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1093.6 833 67.6
CAN.G282.41 Capsicum annuum HOM05D004101 ORTHO05D005221 0.0e+00 1088.2 998 57.6
ECA234G0584 Erigeron canadensis HOM05D004101 ORTHO05D005221 0.0e+00 1084.7 948 59.3
COL.COLO4_06914 Corchorus olitorius HOM05D004101 ORTHO05D005221 0.0e+00 1077.8 868 64.7
Peaxi162Scf00021g02415 Petunia axillaris HOM05D004101 ORTHO05D005221 0.0e+00 1077.8 946 59.9
ECA240G3381 Erigeron canadensis HOM05D004101 ORTHO05D005221 6.7e-312 1073.9 956 58.9
MELO3C008088.2 Cucumis melo HOM05D004101 ORTHO05D005221 1.5e-309 1066.2 872 62.3
Os08g0110700 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 5.3e-307 1057.7 959 57.7
Nitab4.5_0000069g0130 Nicotiana tabacum HOM05D004101 ORTHO05D005221 7.6e-306 1053.9 891 62.4
AUR62022357 Chenopodium quinoa HOM05D004101 ORTHO05D005221 1.9e-304 1049.3 990 58.2
Hund26650 Selenicereus undatus HOM05D004101 ORTHO05D005221 1.6e-303 1046.2 1213 51.4
Lsat_1_v5_gn_7_42860 Lactuca sativa HOM05D004101 ORTHO05D005221 1.9e-301 1039.3 955 57.4
HPP92_008596 Vanilla planifolia HOM05D004101 ORTHO05D005221 1.6e-300 1036.2 1056 54.5
AUR62034351 Chenopodium quinoa HOM05D004101 ORTHO05D005221 6.2e-300 1034.2 989 57.6
Zm00001eb174090 Zea mays HOM05D004101 ORTHO05D005221 1.4e-296 1023.1 994 55.8
Zm00001eb260480 Zea mays HOM05D004101 ORTHO05D005221 1.1e-293 1013.4 976 55.7
Sc26g0002190 Simmondsia chinensis HOM05D004101 ORTHO05D005221 2.5e-285 985.7 853 60.0
Ah.07g205660 Amaranthus hybridus HOM05D004101 ORTHO05D005221 2.1e-263 912.9 969 53.4
THA.LOC104812717 Tarenaya hassleriana HOM05D004101 ORTHO05D005221 4.7e-263 911.8 793 62.0
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 1.5e-261 906.7 1007 50.7
Gohir.D05G255640 Gossypium hirsutum HOM05D004101 ORTHO05D005221 2.4e-259 899.4 706 66.7
Mapoly0151s0040 Marchantia polymorpha HOM05D004101 ORTHO05D005221 2.9e-257 892.5 980 50.2
BcaB04g18153 Brassica carinata HOM05D004101 ORTHO05D005221 8.8e-254 880.9 779 58.4
AagrBONN_evm.TU.Sc2ySwM_228.4088 Anthoceros agrestis HOM05D004101 ORTHO05D005221 1.6e-247 860.1 896 52.7
Pp3c3_10170 Physcomitrium patens HOM05D004101 ORTHO05D005221 1.4e-246 857.1 1123 44.7
SMO200G0043 Selaginella moellendorffii HOM05D004101 ORTHO05D005221 2.3e-246 856.3 877 52.7
Nitab4.5_0009427g0010 Nicotiana tabacum HOM05D004101 ORTHO05D005221 1.6e-223 780.4 739 57.0
TPR.G31924 Trifolium pratense HOM05D004101 ORTHO05D005221 5.1e-209 732.3 657 59.4
CDE02G0702 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 1.4e-203 714.1 696 58.3
A09p34710 Brassica napus HOM05D004101 ORTHO05D005221 5.3e-198 695.7 657 57.4
Rhsim08G0116000 Rhododendron simsii HOM05D004101 ORTHO05D005221 4.3e-192 676.0 767 50.7
Migut.N00698 Erythranthe guttata HOM05D004101 ORTHO05D005221 7.6e-189 665.2 417 78.7
vmacro14428 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 2.6e-165 587.0 381 77.2
vmacro17837 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.4e-163 581.3 427 70.7
Lj2A387T50 Lonicera japonica HOM05D004101 ORTHO05D005221 3.2e-155 553.5 387 72.6
Cpa.g.sc24.82 Carica papaya HOM05D004101 ORTHO05D005221 1.5e-152 544.7 489 60.3
vmacro17836 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 7.2e-147 525.8 725 45.2
Lj2A387G43 Lonicera japonica HOM05D004101 ORTHO05D005221 1.3e-140 505.0 643 46.5
HPP92_008552 Vanilla planifolia HOM05D004101 ORTHO05D005221 2.6e-128 464.2 572 47.7
HPP92_008553 Vanilla planifolia HOM05D004101 ORTHO05D005221 9.2e-126 455.7 312 72.8
Gohir.D05G255660 Gossypium hirsutum HOM05D004101 ORTHO05D005221 1.2e-125 455.3 492 51.4
Oeu006618.1 Olea europaea HOM05D004101 ORTHO05D005221 3.6e-122 443.7 282 76.2
Lsat_1_v5_gn_5_98501 Lactuca sativa HOM05D004101 ORTHO05D007752 2.0e-117 427.9 288 71.9
Migut.N00699 Erythranthe guttata HOM05D004101 ORTHO05D005221 2.1e-106 391.3 317 59.9
CBR_g19663 Chara braunii HOM05D004101 ORTHO05D005221 1.2e-101 375.6 310 61.3
Cpa.g.sc24.85 Carica papaya HOM05D004101 ORTHO05D005221 5.4e-94 350.1 208 81.7
BcaB04g18154 Brassica carinata HOM05D004101 ORTHO05D005221 8.2e-58 229.9 154 76.0
CDE02G4445 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 1.8e-57 228.8 204 56.4
vmacro14430 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 3.2e-54 218.0 139 72.7
A09p34730 Brassica napus HOM05D004101 ORTHO05D005221 6.5e-47 193.7 138 70.3
QL93p1879_0034 Quercus lobata HOM05D004101 ORTHO05D005221 6.1e-45 187.2 126 68.3
vmacro14429 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 3.3e-43 181.4 299 42.8
Aqoxy2G00645 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 7.4e-43 180.3 160 56.9
PSO017G1167 Papaver somniferum HOM05D004101 ORTHO05D005221 2.0e-32 145.6 106 67.9
SEGI_28351 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 1.7e-31 142.5 94 74.5
SEGI_18218 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 6.1e-29 134.0 76 82.9
SEGI_38945 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 1.7e-26 125.9 85 69.4
Cpa.g.sc24.79 Carica papaya HOM05D004101 ORTHO05D005221 3.0e-20 105.1 66 75.8
BolC1t03898H Brassica oleracea HOM05D010251 ORTHO05D005221 3.7e-18 98.2 162 38.9
Medtr5g080490 Medicago truncatula HOM05D004101 ORTHO05D005221 2.0e-16 92.4 50 84.0
SHI03798 Sapria himalayana HOM05D004101 ORTHO05D005221 1.7e-15 89.4 283 30.0
COL.COLO4_06915 Corchorus olitorius HOM05D004101 ORTHO05D005221 2.9e-15 88.6 46 91.3
SMO200G0098 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 1.1e-14 86.7 73 64.4
Pp3c3_10160 Physcomitrium patens HOM05D004101 ORTHO05D005221 1.7e-10 72.8 140 32.9
CDE08G1083 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 4.9e-10 71.2 70 50.0
SMO200G0135 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 1.8e-09 69.3 53 66.0
BolC2t10203H Brassica oleracea HOM05D004101 ORTHO05D027158 1.2e-08 66.6 55 56.4
BolC2t10210H Brassica oleracea HOM05D004101 ORTHO05D027158 1.2e-08 66.6 55 56.4
Os07g0406600 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 1.2e-08 66.6 41 65.9
BcaC05g27051 Brassica carinata HOM05D004101 ORTHO05D027158 4.6e-08 64.7 144 33.3
SMO209G0008 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 5.9e-08 64.3 52 63.5
Lsat_1_v5_gn_5_153621 Lactuca sativa HOM05D004101 ORTHO05D005221 1.7e-07 62.8 68 47.1
A01p24750 Brassica napus HOM05D004101 ORTHO05D027158 3.0e-07 62.0 53 54.7
VMungo0251G0072 Vigna mungo HOM05D004101 ORTHO05D005221 4.3e-06 58.2 33 69.7


User provided reference genes

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