Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR383G0400 Trochodendron aralioides HOM05D005068 ORTHO05D007561 0.0e+00 1224.9 630 100.0
TAR628G1511 Trochodendron aralioides HOM05D005068 ORTHO05D007561 2.7e-139 500.0 290 90.3
Nn8g38536 Nelumbo nucifera HOM05D005068 ORTHO05D007561 3.6e-115 419.9 291 76.3
Dinv37834 Davidia involucrata HOM05D005068 ORTHO05D007561 4.1e-103 379.8 296 71.3
PSO339G5314 Papaver somniferum HOM05D005068 ORTHO05D007561 1.1e-95 355.1 328 61.0
CSS0009347 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 1.0e-93 348.6 291 68.7
PSO384G5027 Papaver somniferum HOM05D005068 ORTHO05D007561 1.0e-93 348.6 328 60.4
CSS0048439 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 1.3e-93 348.2 291 68.7
GSVIVG01016696001 Vitis vinifera HOM05D005068 ORTHO05D007561 6.1e-91 339.3 304 61.2
Aqoxy1G00349 Aquilegia oxysepala HOM05D005068 ORTHO05D007561 6.8e-90 335.9 301 65.4
Lj5A31T61 Lonicera japonica HOM05D005068 ORTHO05D007561 2.0e-89 334.3 435 48.7
Rhsim08G0242500 Rhododendron simsii HOM05D005068 ORTHO05D007561 5.7e-89 332.8 305 65.6
Sed0003275 Sechium edule HOM05D005068 ORTHO05D007561 5.7e-89 332.8 382 50.8
Eucgr.J02606 Eucalyptus grandis HOM05D005068 ORTHO05D007561 1.7e-88 331.3 317 56.8
CANSAT01G1537 Cannabis sativa HOM05D005068 ORTHO05D007561 3.7e-88 330.1 297 62.0
CiPaw.01G213900 Carya illinoinensis HOM05D005068 ORTHO05D007561 4.9e-88 329.7 419 49.4
ClCG09G001250 Citrullus lanatus HOM05D005068 ORTHO05D007561 5.4e-87 326.2 389 51.9
Cc04_g00890 Coffea canephora HOM05D005068 ORTHO05D007561 7.7e-86 322.4 319 58.6
MELO3C024322.2 Cucumis melo HOM05D005068 ORTHO05D007561 1.3e-85 321.6 390 50.8
arahy.Tifrunner.gnm1.ann1.JS5XG8 Arachis hypogaea HOM05D005068 ORTHO05D007561 2.3e-85 320.9 309 58.6
CsaV3_7G034120 Cucumis sativus L. HOM05D005068 ORTHO05D007561 2.3e-85 320.9 390 50.8
Lsat_1_v5_gn_5_136720 Lactuca sativa HOM05D005068 ORTHO05D007561 2.3e-85 320.9 403 48.9
Glyma.07G043700 Glycine max HOM05D005068 ORTHO05D007561 3.8e-85 320.1 312 58.7
Glyma.16G012100 Glycine max HOM05D005068 ORTHO05D007561 8.6e-85 318.9 314 57.0
Sed0017975 Sechium edule HOM05D005068 ORTHO05D007561 1.1e-84 318.5 390 49.5
QL05p001958 Quercus lobata HOM05D005068 ORTHO05D007561 1.5e-84 318.2 330 57.0
Nitab4.5_0009947g0020 Nicotiana tabacum HOM05D005068 ORTHO05D007561 2.5e-84 317.4 291 60.5
arahy.Tifrunner.gnm1.ann1.X03KN2 Arachis hypogaea HOM05D005068 ORTHO05D007561 3.3e-84 317.0 311 58.8
Nitab4.5_0003981g0040 Nicotiana tabacum HOM05D005068 ORTHO05D007561 4.3e-84 316.6 299 58.5
PGR102G2847 Punica granatum HOM05D005068 ORTHO05D007561 4.3e-84 316.6 300 61.7
VMungo0331G1431 Vigna mungo HOM05D005068 ORTHO05D007561 1.8e-82 311.2 388 48.2
Phvul.010G125200 Phaseolus vulgaris HOM05D005068 ORTHO05D007561 2.3e-82 310.8 295 59.0
Hund18654 Selenicereus undatus HOM05D005068 ORTHO05D007561 6.8e-82 309.3 315 56.5
COL.COLO4_30833 Corchorus olitorius HOM05D005068 ORTHO05D007561 8.9e-82 308.9 310 53.5
MD17G1151100 Malus domestica HOM05D005068 ORTHO05D007561 8.9e-82 308.9 310 57.4
MD09G1175700 Malus domestica HOM05D005068 ORTHO05D007561 1.2e-81 308.5 295 59.0
Psat2g016360 Pisum sativum HOM05D005068 ORTHO05D007561 1.2e-81 308.5 314 56.4
Manes.09G018800 Manihot esculenta HOM05D005068 ORTHO05D007561 4.4e-81 306.6 333 55.6
ECA234G0903 Erigeron canadensis HOM05D005068 ORTHO05D007561 5.7e-81 306.2 382 49.7
CAN.G790.67 Capsicum annuum HOM05D005068 ORTHO05D007561 7.5e-81 305.8 303 57.8
AUR62009935 Chenopodium quinoa HOM05D005068 ORTHO05D007561 1.7e-80 304.7 325 54.2
HanXRQChr12g0360151 Helianthus annuus HOM05D005068 ORTHO05D007561 2.9e-80 303.9 388 48.2
Ciclev10024779m.g Citrus clementina HOM05D005068 ORTHO05D007561 4.9e-80 303.1 326 54.9
Medtr4g119670 Medicago truncatula HOM05D005068 ORTHO05D007561 8.3e-80 302.4 308 57.1
Medtr5g019130 Medicago truncatula HOM05D005068 ORTHO05D007561 4.1e-79 300.1 309 56.3
Oeu000383.1 Olea europaea HOM05D005068 ORTHO05D007561 4.1e-79 300.1 382 47.4
Peaxi162Scf00038g02247 Petunia axillaris HOM05D005068 ORTHO05D007561 5.4e-79 299.7 298 57.4
Prupe.3G034700 Prunus persica HOM05D005068 ORTHO05D007561 5.4e-79 299.7 295 56.6
Ca_23422_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 9.2e-79 298.9 320 54.4
Ca_30848_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 9.2e-79 298.9 320 54.4
Lj3g0023295 Lotus japonicus HOM05D005068 ORTHO05D007561 1.2e-78 298.5 308 56.5
DCAR_026429 Daucus carota HOM05D005068 ORTHO05D007561 1.6e-78 298.1 288 60.8
EL10Ac7g16459 Beta vulgaris HOM05D005068 ORTHO05D007561 1.0e-77 295.4 335 52.8
Cpa.g.sc25.173 Carica papaya HOM05D005068 ORTHO05D007561 1.0e-77 295.4 415 44.3
vmacro15071 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 6.6e-77 292.7 343 55.7
Haze_16103 Corylus avellana HOM05D005068 ORTHO05D007561 2.5e-76 290.8 418 45.7
TPR.G16658 Trifolium pratense HOM05D005068 ORTHO05D007561 9.5e-76 288.9 315 54.9
Solyc03g123530.4 Solanum lycopersicum HOM05D005068 ORTHO05D007561 1.2e-75 288.5 296 54.7
MSTRG.22527 Avicennia marina HOM05D005068 ORTHO05D007561 4.0e-74 283.5 286 55.9
Sopen03g041300 Solanum pennellii HOM05D005068 ORTHO05D007561 5.2e-74 283.1 291 55.3
TWI59G1220 Tripterygium wilfordii HOM05D005068 ORTHO05D007561 5.2e-74 283.1 353 49.0
Lalb_Chr04g0253821 Lupinus albus HOM05D005068 ORTHO05D007561 8.9e-74 282.3 251 61.8
Cfa003490 Carpinus fangiana HOM05D005068 ORTHO05D007561 2.6e-73 280.8 326 52.5
Thecc.06G127400 Theobroma cacao HOM05D005068 ORTHO05D007561 2.6e-73 280.8 308 51.3
Gohir.A10G051500 Gossypium hirsutum HOM05D005068 ORTHO05D007561 4.4e-73 280.0 312 51.9
Gorai.011G056800 Gossypium raimondii HOM05D005068 ORTHO05D007561 5.8e-73 279.6 309 51.8
SalBow6G5915 Salvia bowleyana HOM05D005068 ORTHO05D007561 7.5e-73 279.3 316 52.5
CDE05G0629 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 1.3e-72 278.5 291 55.3
THA.LOC104808063 Tarenaya hassleriana HOM05D005068 ORTHO05D007561 1.7e-72 278.1 331 50.8
unitig_26.g8921 Utricularia gibba HOM05D005068 ORTHO05D007561 2.2e-72 277.7 298 53.0
Atru.chr1.4129 Acer truncatum HOM05D005068 ORTHO05D007561 2.9e-72 277.3 331 52.3
Gohir.D10G053200 Gossypium hirsutum HOM05D005068 ORTHO05D007561 3.7e-72 276.9 309 51.5
Potri.001G164100 Populus trichocarpa HOM05D005068 ORTHO05D007561 4.9e-72 276.6 311 53.4
HPP92_014041 Vanilla planifolia HOM05D005068 ORTHO05D007561 1.9e-71 274.6 299 52.5
Sabra01G0128700 Salix brachista HOM05D005068 ORTHO05D007561 7.0e-71 272.7 309 53.7
AUR62001432 Chenopodium quinoa HOM05D005068 ORTHO05D007561 1.2e-70 271.9 306 53.3
FvH4_6g35460 Fragaria vesca HOM05D005068 ORTHO05D007561 1.0e-69 268.9 300 53.0
FAN14G5424 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.0e-69 268.9 297 52.9
FAN09G4827 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.3e-69 268.5 300 53.0
CDE11G0362 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 3.9e-69 266.9 296 54.7
FAN05G3041 Fragaria x ananassa HOM05D005068 ORTHO05D007561 5.6e-68 263.1 301 51.8
Aa31LG4G2770 Aethionema arabicum HOM05D005068 ORTHO05D007561 2.1e-67 261.2 332 49.4
Carub.0002s1929 Capsella rubella HOM05D005068 ORTHO05D007561 2.8e-67 260.8 318 52.8
Peaxi162Scf00535g00325 Petunia axillaris HOM05D005068 ORTHO05D007561 3.6e-67 260.4 290 53.8
AL2G32110 Arabidopsis lyrata HOM05D005068 ORTHO05D007561 3.1e-66 257.3 325 49.8
AT1G72440 Arabidopsis thaliana HOM05D005068 ORTHO05D007561 4.4e-65 253.4 330 48.5
MBI13_g01677_MAGBIO Magnolia biondii HOM05D005068 ORTHO05D007561 1.7e-64 251.5 328 49.7
RcHm_v2.0_Chr2g0147011 Rosa chinensis HOM05D005068 ORTHO05D007561 2.2e-64 251.1 307 50.2
Sp5g27520 Schrenkiella parvula HOM05D005068 ORTHO05D007561 3.7e-64 250.4 323 49.2
SHI38508 Sapria himalayana HOM05D005068 ORTHO05D007561 1.2e-62 245.4 287 50.9
Thhalv10018056m.g Eutrema salsugineum HOM05D005068 ORTHO05D007561 2.7e-62 244.2 323 49.2
CARHR065370 Cardamine hirsuta HOM05D005068 ORTHO05D007561 3.5e-62 243.8 333 47.1
ATR0317G028 Amborella trichopoda HOM05D005068 ORTHO05D007561 7.8e-62 242.7 308 47.7
FAN02G4153 Fragaria x ananassa HOM05D005068 ORTHO05D007561 6.6e-61 239.6 302 48.7
BcaC08g46695 Brassica carinata HOM05D005068 ORTHO05D007561 1.6e-59 235.0 291 49.8
BraA07t31420Z Brassica rapa HOM05D005068 ORTHO05D007561 1.6e-59 235.0 293 49.8
Os09g0116400 Oryza sativa ssp. japonica HOM05D005068 ORTHO05D007561 2.1e-59 234.6 285 48.8
SGA_v2.0_scaffold71G23904 Striga asiatica HOM05D005068 ORTHO05D007561 1.1e-58 232.3 248 55.2
Zm00001eb008900 Zea mays HOM05D005068 ORTHO05D007561 1.1e-58 232.3 294 47.6
C06p46800 Brassica napus HOM05D005068 ORTHO05D007561 1.4e-58 231.9 298 50.0
A07p38620 Brassica napus HOM05D005068 ORTHO05D007561 1.8e-58 231.5 293 49.1
BolC6t39723H Brassica oleracea HOM05D005068 ORTHO05D007561 4.0e-58 230.3 307 48.5
SEGI_35987 Sequoiadendron giganteum HOM05D005068 ORTHO05D007561 6.8e-58 229.6 327 44.6
BcaB03g14995 Brassica carinata HOM05D005068 ORTHO05D007561 1.5e-57 228.4 301 48.8
Sc12g0010810 Simmondsia chinensis HOM05D005068 ORTHO05D007561 1.1e-55 222.2 244 55.3
vmacro14085 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 5.4e-55 219.9 232 61.6
Actinidia21819 Actinidia chinensis HOM05D005068 ORTHO05D007561 1.1e-47 195.7 177 61.0
Haze_25369 Corylus avellana HOM05D005068 ORTHO05D007561 7.8e-46 189.5 168 58.9
Migut.I01119 Erythranthe guttata HOM05D005068 ORTHO05D007561 9.3e-39 166.0 226 47.3
Pp3c8_7540 Physcomitrium patens HOM05D005068 ORTHO05D007561 1.1e-34 152.5 357 34.2
Mapoly0001s0039 Marchantia polymorpha HOM05D005068 ORTHO05D007561 1.4e-34 152.1 320 38.1
AagrBONN_evm.TU.Sc2ySwM_228.3616 Anthoceros agrestis HOM05D005068 ORTHO05D007561 9.0e-34 149.4 371 32.6
CBR_g4353 Chara braunii HOM05D005068 ORTHO05D007561 3.5e-30 137.5 249 36.5
vmacro14086 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 1.3e-27 129.0 79 78.5
Nitab4.5_0007072g0030 Nicotiana tabacum HOM05D005068 ORTHO05D007561 1.5e-25 122.1 66 81.8
SMO356G0436 Selaginella moellendorffii HOM05D005068 ORTHO05D007561 2.2e-24 118.2 256 38.3
ECA234G3781 Erigeron canadensis HOM05D005068 ORTHO05D007561 1.2e-22 112.5 169 42.0
ECA233G2064 Erigeron canadensis HOM05D005068 ORTHO05D007561 7.6e-17 93.2 81 59.3
TAR369G0959 Trochodendron aralioides HOM05D044068 ORTHO05D414811 8.7e-13 79.7 94 38.3
TAR362G1046 Trochodendron aralioides HOM05D044068 ORTHO05D414429 4.3e-12 77.4 75 49.3
Cre10.g459600 Chlamydomonas reinhardtii HOM05D005068 ORTHO05D007561 1.4e-10 72.4 367 26.2
TAR371G0283 Trochodendron aralioides HOM05D000234 ORTHO05D000335 5.3e-10 70.5 71 49.3
Cfa026526 Carpinus fangiana HOM05D005068 ORTHO05D007561 4.6e-06 57.4 156 32.7
PRCOL_00007240 Prasinoderma coloniale HOM05D005068 ORTHO05D007561 4.6e-06 57.4 60 50.0


User provided reference genes

Program Settings