Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR383G0322 Trochodendron aralioides HOM05D004219 ORTHO05D004857 2.9e-76 288.5 147 100.0
TAR626G0374 Trochodendron aralioides HOM05D004219 ORTHO05D004857 7.4e-64 247.3 150 83.3
TAR383G0549 Trochodendron aralioides HOM05D004219 ORTHO05D004857 5.7e-56 221.1 149 76.5
TAR624G1175 Trochodendron aralioides HOM05D004219 ORTHO05D004857 3.1e-54 215.3 152 73.0
GSVIVG01016680001 Vitis vinifera HOM05D004219 ORTHO05D004857 6.5e-52 207.6 149 70.5
MBI13_g01684_MAGBIO Magnolia biondii HOM05D004219 ORTHO05D004857 1.6e-50 203.0 149 71.8
Dinv20389 Davidia involucrata HOM05D004219 ORTHO05D004857 2.1e-50 202.6 149 70.5
Nn6g35715 Nelumbo nucifera HOM05D004219 ORTHO05D004857 4.7e-50 201.4 149 69.8
GSVIVG01015005001 Vitis vinifera HOM05D004219 ORTHO05D004857 4.7e-50 201.4 149 71.8
Actinidia21828 Actinidia chinensis HOM05D004219 ORTHO05D004857 1.1e-48 196.8 149 69.1
Actinidia24435 Actinidia chinensis HOM05D004219 ORTHO05D004857 1.5e-48 196.4 149 67.8
QL11p003182 Quercus lobata HOM05D004219 ORTHO05D004857 3.3e-48 195.3 149 68.5
Manes.03G045300 Manihot esculenta HOM05D004219 ORTHO05D004857 2.8e-47 192.2 149 66.4
Nn5g27342 Nelumbo nucifera HOM05D004219 ORTHO05D004857 4.8e-47 191.4 145 69.7
Atru.chr7.1780 Acer truncatum HOM05D004219 ORTHO05D004857 8.2e-47 190.7 149 65.8
Cfa002934 Carpinus fangiana HOM05D004219 ORTHO05D004857 8.2e-47 190.7 149 67.1
Ciclev10007563m.g Citrus clementina HOM05D004219 ORTHO05D004857 8.2e-47 190.7 150 68.0
Aqoxy7G00940 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 1.1e-46 190.3 149 67.1
QL05p001473 Quercus lobata HOM05D004219 ORTHO05D004857 1.8e-46 189.5 149 66.4
QL05p001749 Quercus lobata HOM05D004219 ORTHO05D004857 1.8e-46 189.5 149 66.4
CiPaw.01G212300 Carya illinoinensis HOM05D004219 ORTHO05D004857 3.1e-46 188.7 150 67.3
CiPaw.02G131700 Carya illinoinensis HOM05D004219 ORTHO05D004857 3.1e-46 188.7 150 64.7
Manes.16G089900 Manihot esculenta HOM05D004219 ORTHO05D004857 4.1e-46 188.3 149 66.4
Rhsim08G0243800 Rhododendron simsii HOM05D004219 ORTHO05D004857 2.0e-45 186.0 148 64.2
vmacro15080 Vaccinium macrocarpon HOM05D004219 ORTHO05D004857 2.0e-45 186.0 148 64.2
TWI63G0110 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 2.6e-45 185.7 150 65.3
Cfa003467 Carpinus fangiana HOM05D004219 ORTHO05D004857 5.9e-45 184.5 150 65.3
Cc04_g00810 Coffea canephora HOM05D004219 ORTHO05D004857 7.7e-45 184.1 149 63.1
TWI34G1001 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 1.3e-44 183.3 150 66.0
CSS0000587 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 1.7e-44 183.0 149 65.8
CSS0038823 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 1.7e-44 183.0 149 65.8
Potri.006G135500 Populus trichocarpa HOM05D004219 ORTHO05D004857 1.7e-44 183.0 150 66.0
PSO135G0149 Papaver somniferum HOM05D004219 ORTHO05D004857 2.2e-44 182.6 149 68.5
COL.COLO4_21198 Corchorus olitorius HOM05D004219 ORTHO05D004857 2.9e-44 182.2 144 67.4
Thecc.09G069400 Theobroma cacao HOM05D004219 ORTHO05D004857 5.0e-44 181.4 150 65.3
Haze_16129 Corylus avellana HOM05D004219 ORTHO05D004857 6.5e-44 181.0 149 63.8
Duzib168G0770 Durio zibethinus HOM05D004219 ORTHO05D004857 6.5e-44 181.0 149 65.1
Gohir.D07G017300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 6.5e-44 181.0 149 63.8
Gorai.001G018000 Gossypium raimondii HOM05D004219 ORTHO05D004857 6.5e-44 181.0 149 63.8
PSO724G0293 Papaver somniferum HOM05D004219 ORTHO05D004857 8.5e-44 180.6 150 68.0
Gohir.A07G017500 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.1e-43 180.3 149 63.1
Lj5A30T66 Lonicera japonica HOM05D004219 ORTHO05D004857 1.1e-43 180.3 153 62.1
HanXRQChr09g0277221 Helianthus annuus HOM05D004219 ORTHO05D004857 1.4e-43 179.9 149 65.8
Potri.018G064500 Populus trichocarpa HOM05D004219 ORTHO05D004857 3.2e-43 178.7 150 65.3
Sabra18G0057200 Salix brachista HOM05D004219 ORTHO05D004857 3.2e-43 178.7 150 64.7
Nitab4.5_0000357g0090 Nicotiana tabacum HOM05D004219 ORTHO05D004857 3.6e-42 175.3 149 59.7
Nitab4.5_0004589g0030 Nicotiana tabacum HOM05D004219 ORTHO05D004857 4.7e-42 174.9 149 59.7
DCAR_016092 Daucus carota HOM05D004219 ORTHO05D004857 6.1e-42 174.5 149 60.4
Eucgr.C00764 Eucalyptus grandis HOM05D004219 ORTHO05D004857 8.0e-42 174.1 149 61.7
CANSAT56G2968 Cannabis sativa HOM05D004219 ORTHO05D004857 2.3e-41 172.6 149 61.7
Duzib150G0120 Durio zibethinus HOM05D004219 ORTHO05D004857 6.7e-41 171.0 153 60.1
Peaxi162Scf00177g00619 Petunia axillaris HOM05D004219 ORTHO05D004857 6.7e-41 171.0 153 59.5
ATR0099G075 Amborella trichopoda HOM05D004219 ORTHO05D004857 8.8e-41 170.6 149 62.4
EL10Ac7g16483 Beta vulgaris HOM05D004219 ORTHO05D004857 8.8e-41 170.6 144 61.8
Cpa.g.sc82.51 Carica papaya HOM05D004219 ORTHO05D004857 1.1e-40 170.2 149 62.4
Gohir.D06G082300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.5e-40 169.9 149 61.7
Gorai.010G095800 Gossypium raimondii HOM05D004219 ORTHO05D004857 1.5e-40 169.9 149 61.7
Sabra06G0106200 Salix brachista HOM05D004219 ORTHO05D004857 1.5e-40 169.9 149 63.1
Aqoxy7G04168 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 3.3e-40 168.7 151 59.6
ECA232G2871 Erigeron canadensis HOM05D004219 ORTHO05D004857 3.3e-40 168.7 149 61.7
Lsat_1_v5_gn_4_92081 Lactuca sativa HOM05D004219 ORTHO05D004857 3.3e-40 168.7 149 62.4
Ca_02284_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 2.2e-39 166.0 149 61.7
Glyma.07G045100 Glycine max HOM05D004219 ORTHO05D004857 2.2e-39 166.0 149 57.7
Duzib187G1712 Durio zibethinus HOM05D004219 ORTHO05D004857 2.8e-39 165.6 149 60.4
Lalb_Chr08g0232811 Lupinus albus HOM05D004219 ORTHO05D004857 2.8e-39 165.6 149 61.1
Glyma.09G074300 Glycine max HOM05D004219 ORTHO05D004857 3.7e-39 165.2 149 61.1
Glyma.16G013100 Glycine max HOM05D004219 ORTHO05D004857 4.8e-39 164.9 149 57.7
Glyma.U031325 Glycine max HOM05D004219 ORTHO05D004857 8.2e-39 164.1 149 60.4
PGSC0003DMG400028852 Solanum tuberosum HOM05D004219 ORTHO05D004857 8.2e-39 164.1 149 55.7
Prupe.3G031800 Prunus persica HOM05D004219 ORTHO05D004857 1.4e-38 163.3 150 60.0
Sed0001277 Sechium edule HOM05D004219 ORTHO05D004857 1.4e-38 163.3 149 56.4
Sopen12g024040 Solanum pennellii HOM05D004219 ORTHO05D004857 1.4e-38 163.3 149 55.7
HPP92_019289 Vanilla planifolia HOM05D004219 ORTHO05D004857 1.4e-38 163.3 149 58.4
Gohir.A06G084100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.8e-38 162.9 149 61.1
Hund05707 Selenicereus undatus HOM05D004219 ORTHO05D004857 3.1e-38 162.2 144 59.0
Aa31LG4G12950 Aethionema arabicum HOM05D004219 ORTHO05D004857 4.1e-38 161.8 151 56.3
MD17G1153300 Malus domestica HOM05D004219 ORTHO05D004857 4.1e-38 161.8 149 58.4
CAN.G1721.2 Capsicum annuum HOM05D004219 ORTHO05D004857 7.0e-38 161.0 149 55.7
MD09G1173700 Malus domestica HOM05D004219 ORTHO05D004857 1.2e-37 160.2 149 57.7
Phvul.009G223200 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 1.2e-37 160.2 149 61.1
Sp5g18450 Schrenkiella parvula HOM05D004219 ORTHO05D004857 1.6e-37 159.8 150 57.3
TPR.G18148 Trifolium pratense HOM05D004219 ORTHO05D004857 1.6e-37 159.8 149 56.4
Haze_26074 Corylus avellana HOM05D004219 ORTHO05D004857 2.0e-37 159.5 217 45.6
Solyc12g049570.3 Solanum lycopersicum HOM05D004219 ORTHO05D004857 2.0e-37 159.5 149 55.0
Thhalv10002415m.g Eutrema salsugineum HOM05D004219 ORTHO05D004857 3.5e-37 158.7 150 57.3
VMungo1309G2772 Vigna mungo HOM05D004219 ORTHO05D004857 3.5e-37 158.7 149 59.7
AL5G21340 Arabidopsis lyrata HOM05D004219 ORTHO05D004857 7.7e-37 157.5 150 57.3
Phvul.010G123900 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 7.7e-37 157.5 149 56.4
Oeu059024.1 Olea europaea HOM05D004219 ORTHO05D004857 1.0e-36 157.1 149 57.0
AT3G43240 Arabidopsis thaliana HOM05D004219 ORTHO05D004857 1.3e-36 156.8 150 56.7
Gohir.A05G036600 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.3e-36 156.8 149 58.4
ClCG07G014320 Citrullus lanatus HOM05D004219 ORTHO05D004857 1.7e-36 156.4 150 54.7
Lalb_Chr23g0276141 Lupinus albus HOM05D004219 ORTHO05D004857 1.7e-36 156.4 149 58.4
Gohir.D05G038100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 2.2e-36 156.0 149 58.4
Os09g0434100 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 2.2e-36 156.0 148 58.8
Ah.08g217310 Amaranthus hybridus HOM05D004219 ORTHO05D004857 2.9e-36 155.6 144 57.6
FAN09G1853 Fragaria x ananassa HOM05D004219 ORTHO05D004857 2.9e-36 155.6 149 56.4
Hma1.2p1_0229F.1_g097030 Hydrangea macrophylla HOM05D004219 ORTHO05D004857 2.9e-36 155.6 210 47.1
THA.LOC104799604 Tarenaya hassleriana HOM05D004219 ORTHO05D004857 2.9e-36 155.6 151 58.9
FvH4_6g35710 Fragaria vesca HOM05D004219 ORTHO05D004857 3.8e-36 155.2 149 56.4
FAN14G4832 Fragaria x ananassa HOM05D004219 ORTHO05D004857 3.8e-36 155.2 149 56.4
Psat1g137920 Pisum sativum HOM05D004219 ORTHO05D004857 3.8e-36 155.2 149 63.8
Carub.0005s0906 Capsella rubella HOM05D004219 ORTHO05D004857 5.0e-36 154.8 150 56.7
Ca_23428_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 5.0e-36 154.8 149 60.4
CARHR153440 Cardamine hirsuta HOM05D004219 ORTHO05D004857 1.1e-35 153.7 150 56.0
RcHm_v2.0_Chr2g0147711 Rosa chinensis HOM05D004219 ORTHO05D004857 1.1e-35 153.7 149 56.4
Zm00001eb040700 Zea mays HOM05D004219 ORTHO05D004857 1.1e-35 153.7 151 57.0
Lj6g0016067 Lotus japonicus HOM05D004219 ORTHO05D004857 1.5e-35 153.3 149 58.4
Zm00001eb313820 Zea mays HOM05D004219 ORTHO05D004857 1.5e-35 153.3 149 56.4
CsaV3_7G034010 Cucumis sativus L. HOM05D004219 ORTHO05D004857 1.9e-35 152.9 150 57.3
FAN02G2730 Fragaria x ananassa HOM05D004219 ORTHO05D004857 1.9e-35 152.9 149 55.7
Gorai.009G038600 Gossypium raimondii HOM05D004219 ORTHO05D004857 1.9e-35 152.9 149 57.7
Medtr8g022980 Medicago truncatula HOM05D004219 ORTHO05D004857 2.5e-35 152.5 144 59.0
TPR.G26875 Trifolium pratense HOM05D004219 ORTHO05D004857 4.2e-35 151.8 149 57.7
Medtr2g044550 Medicago truncatula HOM05D004219 ORTHO05D004857 1.2e-34 150.2 149 55.7
SGA_v2.0_scaffold71G23915 Striga asiatica HOM05D004219 ORTHO05D004857 1.2e-34 150.2 149 55.7
AUR62025624 Chenopodium quinoa HOM05D004219 ORTHO05D004857 1.6e-34 149.8 150 54.0
Lj3g0000905 Lotus japonicus HOM05D004219 ORTHO05D004857 1.6e-34 149.8 144 55.6
MELO3C024313.2 Cucumis melo HOM05D004219 ORTHO05D004857 2.1e-34 149.4 150 55.3
Psat4g165840 Pisum sativum HOM05D004219 ORTHO05D004857 2.1e-34 149.4 149 59.7
VMungo0331G1133 Vigna mungo HOM05D004219 ORTHO05D004857 2.1e-34 149.4 149 53.7
Zm00001eb099960 Zea mays HOM05D004219 ORTHO05D004857 2.1e-34 149.4 149 56.4
Os08g0451400 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 6.1e-34 147.9 149 57.0
Sc15g0000780 Simmondsia chinensis HOM05D004219 ORTHO05D004857 6.1e-34 147.9 149 53.7
Sed0013084 Sechium edule HOM05D004219 ORTHO05D004857 1.8e-33 146.4 149 52.3
CsaV3_3G030980 Cucumis sativus L. HOM05D004219 ORTHO05D004857 5.2e-33 144.8 150 52.0
BcaC01g02109 Brassica carinata HOM05D004219 ORTHO05D004857 1.2e-32 143.7 152 53.3
BolC3t19092H Brassica oleracea HOM05D004219 ORTHO05D004857 1.2e-32 143.7 152 53.3
ClCG09G001310 Citrullus lanatus HOM05D004219 ORTHO05D004857 1.2e-32 143.7 150 53.3
BcaB01g01229 Brassica carinata HOM05D004219 ORTHO05D004857 2.6e-32 142.5 152 52.0
A06p22640 Brassica napus HOM05D004219 ORTHO05D004857 2.6e-32 142.5 152 52.6
MELO3C022696.2 Cucumis melo HOM05D004219 ORTHO05D004857 5.7e-32 141.4 150 51.3
CDE04G3533 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 1.3e-31 140.2 149 51.0
Lalb_Chr17g0343311 Lupinus albus HOM05D004219 ORTHO05D004857 1.7e-31 139.8 149 50.3
Lalb_Chr04g0253891 Lupinus albus HOM05D004219 ORTHO05D004857 2.2e-31 139.4 149 51.7
Migut.I01126 Erythranthe guttata HOM05D004219 ORTHO05D004857 3.7e-31 138.7 150 52.7
Sed0013718 Sechium edule HOM05D004219 ORTHO05D004857 8.2e-31 137.5 150 48.7
PGR142G3683 Punica granatum HOM05D004219 ORTHO05D004857 9.1e-30 134.0 150 53.3
arahy.Tifrunner.gnm1.ann1.82J223 Arachis hypogaea HOM05D004219 ORTHO05D004857 7.2e-27 124.4 126 54.0
arahy.Tifrunner.gnm1.ann1.BBC6WZ Arachis hypogaea HOM05D004219 ORTHO05D004857 3.6e-26 122.1 126 53.2
PGR044G2279 Punica granatum HOM05D004219 ORTHO05D004857 6.8e-25 117.9 149 46.3
unitig_749.g14036 Utricularia gibba HOM05D004219 ORTHO05D004857 1.2e-24 117.1 149 46.3
Os08g0451700 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 2.0e-24 116.3 144 46.5
Eucgr.I02158 Eucalyptus grandis HOM05D004219 ORTHO05D004857 7.2e-19 97.8 144 43.8
CDE06G0638 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 3.0e-17 92.4 110 46.4
unitig_26.g8917 Utricularia gibba HOM05D004219 ORTHO05D004857 9.8e-16 87.4 111 45.9
Medtr8g038730 Medicago truncatula HOM05D004219 ORTHO05D004857 4.5e-13 78.6 57 66.7
Oeu028234.1 Olea europaea HOM05D004219 ORTHO05D004857 6.6e-12 74.7 94 40.4
Pp3c15_1350 Physcomitrium patens HOM05D004219 ORTHO05D004857 3.6e-10 68.9 150 33.3
AUR62025956 Chenopodium quinoa HOM05D000121 ORTHO05D024978 1.1e-06 57.4 68 47.1
AUR62001416 Chenopodium quinoa HOM05D004219 ORTHO05D004857 4.1e-06 55.5 31 77.4


User provided reference genes

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