Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR383G0184 Trochodendron aralioides HOM05D006422 ORTHO05D007992 1.0e-128 463.4 235 100.0
Nn1g01726 Nelumbo nucifera HOM05D006422 ORTHO05D007992 1.9e-98 362.8 231 79.7
Dinv10868 Davidia involucrata HOM05D006422 ORTHO05D007992 2.7e-92 342.4 236 76.3
Dinv26550 Davidia involucrata HOM05D006422 ORTHO05D007992 2.7e-92 342.4 236 76.3
Cfa013253 Carpinus fangiana HOM05D006422 ORTHO05D007992 1.3e-86 323.6 227 73.1
GSVIVG01035544001 Vitis vinifera HOM05D006422 ORTHO05D007992 1.7e-86 323.2 236 72.5
PSO170G4757 Papaver somniferum HOM05D006422 ORTHO05D007992 6.4e-86 321.2 244 68.4
Prupe.1G462100 Prunus persica HOM05D006422 ORTHO05D007992 9.3e-85 317.4 230 70.9
Solyc08g006160.4 Solanum lycopersicum HOM05D006422 ORTHO05D007992 2.7e-84 315.8 221 74.7
Manes.16G136400 Manihot esculenta HOM05D006422 ORTHO05D007992 3.5e-84 315.5 238 69.7
Potri.006G276400 Populus trichocarpa HOM05D006422 ORTHO05D007992 3.5e-84 315.5 236 69.9
PSO017G3510 Papaver somniferum HOM05D006422 ORTHO05D007992 4.6e-84 315.1 241 68.0
Sopen08g002130 Solanum pennellii HOM05D006422 ORTHO05D007992 7.9e-84 314.3 222 74.3
PGSC0003DMG400009533 Solanum tuberosum HOM05D006422 ORTHO05D007992 1.0e-83 313.9 219 74.4
Sabra06G0214100 Salix brachista HOM05D006422 ORTHO05D007992 1.3e-83 313.5 236 69.5
Aqoxy5G03915 Aquilegia oxysepala HOM05D006422 ORTHO05D007992 2.3e-83 312.8 219 72.6
RcHm_v2.0_Chr6g0312201 Rosa chinensis HOM05D006422 ORTHO05D007992 2.3e-83 312.8 232 69.4
FvH4_2g30680 Fragaria vesca HOM05D006422 ORTHO05D007992 3.9e-83 312.0 230 69.6
CiPaw.07G214400 Carya illinoinensis HOM05D006422 ORTHO05D007992 5.1e-83 311.6 228 70.6
Ciclev10009324m.g Citrus clementina HOM05D006422 ORTHO05D007992 5.1e-83 311.6 213 74.2
CAN.G1364.3 Capsicum annuum HOM05D006422 ORTHO05D007992 8.7e-83 310.8 211 74.9
Atru.chr7.2615_Atru.chr7.2616 Acer truncatum HOM05D006422 ORTHO05D007992 1.1e-82 310.5 241 68.0
MD15G1109900 Malus domestica HOM05D006422 ORTHO05D007992 1.5e-82 310.1 234 67.5
Actinidia03579 Actinidia chinensis HOM05D006422 ORTHO05D007992 1.9e-82 309.7 188 79.8
FAN24G2382 Fragaria x ananassa HOM05D006422 ORTHO05D007992 2.5e-82 309.3 230 69.1
QL12p024696 Quercus lobata HOM05D006422 ORTHO05D007992 3.7e-81 305.4 214 72.4
Duzib168G1765 Durio zibethinus HOM05D006422 ORTHO05D007992 1.1e-80 303.9 236 65.3
Thecc.09G005200 Theobroma cacao HOM05D006422 ORTHO05D007992 1.1e-80 303.9 213 71.8
AUR62020627 Chenopodium quinoa HOM05D006422 ORTHO05D007992 4.0e-80 302.0 217 70.0
Rhsim07G0170200 Rhododendron simsii HOM05D006422 ORTHO05D007992 5.3e-80 301.6 222 69.8
FAN27G3442 Fragaria x ananassa HOM05D006422 ORTHO05D007992 9.0e-80 300.8 233 68.2
Nitab4.5_0000025g0080 Nicotiana tabacum HOM05D006422 ORTHO05D007992 9.0e-80 300.8 220 71.4
MBI13_g31531_MAGBIO Magnolia biondii HOM05D006422 ORTHO05D007992 1.2e-79 300.4 182 79.1
COL.COLO4_18610 Corchorus olitorius HOM05D006422 ORTHO05D007992 1.5e-79 300.1 248 65.3
Hma1.2p1_0534F.1_g173720 Hydrangea macrophylla HOM05D006422 ORTHO05D007992 2.0e-79 299.7 243 65.8
CDE04G2326 Ceratophyllum demersum HOM05D006422 ORTHO05D007992 1.0e-78 297.4 232 62.9
Cc04_g09430 Coffea canephora HOM05D006422 ORTHO05D007992 2.2e-78 296.2 222 69.4
Peaxi162Scf00045g01530 Petunia axillaris HOM05D006422 ORTHO05D007992 2.2e-78 296.2 221 71.0
CANSAT25G0758 Cannabis sativa HOM05D006422 ORTHO05D007992 4.9e-78 295.0 240 63.8
MSTRG.11814 Avicennia marina HOM05D006422 ORTHO05D007992 6.5e-78 294.7 210 71.9
EL10Ac2g03719 Beta vulgaris HOM05D006422 ORTHO05D007992 6.5e-78 294.7 249 64.7
Lj5g0012981 Lotus japonicus HOM05D006422 ORTHO05D007992 1.4e-77 293.5 210 69.0
Migut.A00443 Erythranthe guttata HOM05D006422 ORTHO05D007992 4.2e-77 292.0 211 69.2
A03p09710 Brassica napus HOM05D006422 ORTHO05D007992 1.2e-76 290.4 237 60.8
BraA03t10287Z Brassica rapa HOM05D006422 ORTHO05D007992 1.2e-76 290.4 237 60.8
TWI34G0909 Tripterygium wilfordii HOM05D006422 ORTHO05D007992 1.2e-76 290.4 208 71.2
C03p11290 Brassica napus HOM05D006422 ORTHO05D007992 3.5e-76 288.9 237 59.9
BcaB01g04822 Brassica carinata HOM05D006422 ORTHO05D007992 4.6e-76 288.5 235 60.0
ATR0626G032 Amborella trichopoda HOM05D006422 ORTHO05D007992 6.0e-76 288.1 236 64.4
vmacro05107 Vaccinium macrocarpon HOM05D006422 ORTHO05D007992 6.0e-76 288.1 165 81.2
Ca_12880_v3 Cicer arietinum L. HOM05D006422 ORTHO05D007992 7.9e-76 287.7 210 67.1
Lalb_Chr14g0362181 Lupinus albus HOM05D006422 ORTHO05D007992 1.0e-75 287.3 207 68.1
Nitab4.5_0003259g0070 Nicotiana tabacum HOM05D006422 ORTHO05D007992 1.3e-75 287.0 210 71.9
Sc09g0007930 Simmondsia chinensis HOM05D006422 ORTHO05D007992 1.3e-75 287.0 216 66.2
BcaB01g04848 Brassica carinata HOM05D006422 ORTHO05D007992 1.8e-75 286.6 237 59.9
BcaB08g36552 Brassica carinata HOM05D006422 ORTHO05D007992 1.8e-75 286.6 237 60.3
BolC3t13599H Brassica oleracea HOM05D006422 ORTHO05D007992 2.3e-75 286.2 237 59.5
Sp6g24440 Schrenkiella parvula HOM05D006422 ORTHO05D007992 3.0e-75 285.8 241 60.6
Gohir.D06G108900 Gossypium hirsutum HOM05D006422 ORTHO05D007992 5.1e-75 285.0 211 68.2
Phvul.001G058000 Phaseolus vulgaris HOM05D006422 ORTHO05D007992 5.1e-75 285.0 209 68.4
Psat6g032000 Pisum sativum HOM05D006422 ORTHO05D007992 5.1e-75 285.0 202 69.3
Medtr1g009980 Medicago truncatula HOM05D006422 ORTHO05D007992 8.7e-75 284.3 233 61.4
VMungo0647G2190 Vigna mungo HOM05D006422 ORTHO05D007992 8.7e-75 284.3 209 68.9
BcaC04g19400 Brassica carinata HOM05D006422 ORTHO05D007992 1.1e-74 283.9 208 66.3
C09p56110 Brassica napus HOM05D006422 ORTHO05D007992 1.1e-74 283.9 208 66.3
BolC9t58478H Brassica oleracea HOM05D006422 ORTHO05D007992 1.1e-74 283.9 208 66.3
Thhalv10014537m.g Eutrema salsugineum HOM05D006422 ORTHO05D007992 1.1e-74 283.9 241 60.6
Gorai.010G123700 Gossypium raimondii HOM05D006422 ORTHO05D007992 1.1e-74 283.9 211 67.8
Eucgr.C02103 Eucalyptus grandis HOM05D006422 ORTHO05D007992 1.5e-74 283.5 236 63.6
THA.LOC104811048 Tarenaya hassleriana HOM05D006422 ORTHO05D007992 1.5e-74 283.5 241 60.2
A10p19790 Brassica napus HOM05D006422 ORTHO05D007992 3.3e-74 282.3 204 67.2
BraA10t44055Z Brassica rapa HOM05D006422 ORTHO05D007992 3.3e-74 282.3 204 67.2
CARHR192910 Cardamine hirsuta HOM05D006422 ORTHO05D007992 4.3e-74 282.0 237 58.2
HPP92_004705 Vanilla planifolia HOM05D006422 ORTHO05D007992 4.3e-74 282.0 193 68.9
Lsat_1_v5_gn_5_61061 Lactuca sativa HOM05D006422 ORTHO05D007992 5.7e-74 281.6 183 73.2
PGR042G1463 Punica granatum HOM05D006422 ORTHO05D007992 1.3e-73 280.4 236 62.7
AUR62038756 Chenopodium quinoa HOM05D006422 ORTHO05D007992 2.1e-73 279.6 163 80.4
HanXRQChr13g0412481 Helianthus annuus HOM05D006422 ORTHO05D007992 2.1e-73 279.6 201 67.7
Gohir.A06G106700 Gossypium hirsutum HOM05D006422 ORTHO05D007992 4.8e-73 278.5 215 67.0
arahy.Tifrunner.gnm1.ann1.43EIBT Arachis hypogaea HOM05D006422 ORTHO05D007992 6.3e-73 278.1 184 71.2
TPR.G11997 Trifolium pratense HOM05D006422 ORTHO05D007992 8.2e-73 277.7 202 67.3
arahy.Tifrunner.gnm1.ann1.D9GJPD Arachis hypogaea HOM05D006422 ORTHO05D007992 1.1e-72 277.3 184 71.2
Carub.0006s1831 Capsella rubella HOM05D006422 ORTHO05D007992 1.1e-72 277.3 237 57.8
Aa31LG9G9500 Aethionema arabicum HOM05D006422 ORTHO05D007992 2.4e-72 276.2 219 63.0
AT5G19940 Arabidopsis thaliana HOM05D006422 ORTHO05D007992 2.4e-72 276.2 240 58.8
DCAR_003025 Daucus carota HOM05D006422 ORTHO05D007992 4.1e-72 275.4 175 76.0
Haze_21696 Corylus avellana HOM05D006422 ORTHO05D007992 5.3e-72 275.0 158 82.3
AL6G31470 Arabidopsis lyrata HOM05D006422 ORTHO05D007992 6.9e-72 274.6 241 58.1
Zm00001eb071430 Zea mays HOM05D006422 ORTHO05D007992 7.6e-71 271.2 198 70.7
Os04g0607000 Oryza sativa ssp. japonica HOM05D006422 ORTHO05D007992 2.9e-70 269.2 189 69.3
FAN20G1184 Fragaria x ananassa HOM05D006422 ORTHO05D007992 5.0e-70 268.5 211 65.9
ClCG08G012780 Citrullus lanatus HOM05D006422 ORTHO05D007992 8.4e-70 267.7 235 63.4
unitig_748.g7381 Utricularia gibba HOM05D006422 ORTHO05D007992 1.2e-68 263.8 206 66.0
SGA_v2.0_scaffold27G11666 Striga asiatica HOM05D006422 ORTHO05D007992 3.9e-67 258.8 212 65.6
Glyma.17G201600 Glycine max HOM05D006422 ORTHO05D007992 9.7e-66 254.2 196 64.3
CiPaw.08G017800 Carya illinoinensis HOM05D006422 ORTHO05D007992 2.8e-65 252.7 237 62.0
Oeu018400.2 Olea europaea HOM05D006422 ORTHO05D007992 2.6e-63 246.1 155 74.8
ECA240G0283 Erigeron canadensis HOM05D000069 ORTHO05D000060 5.9e-63 245.0 159 70.4
FAN15G3645 Fragaria x ananassa HOM05D006422 ORTHO05D007992 6.1e-60 235.0 192 64.1
SEGI_33970 Sequoiadendron giganteum HOM05D006422 ORTHO05D007992 5.3e-56 221.9 184 56.5
Lj7A749G60 Lonicera japonica HOM05D006422 ORTHO05D007992 6.5e-54 214.9 122 82.0
Ah.11g043920 Amaranthus hybridus HOM05D006422 ORTHO05D007992 2.5e-53 213.0 192 58.3
MELO3C011201.2 Cucumis melo HOM05D006422 ORTHO05D007992 5.5e-53 211.8 158 69.0
CSS0034711 Camellia sinensis var. sinensis HOM05D006422 ORTHO05D007992 1.5e-50 203.8 139 74.1
Pp3c13_4790 Physcomitrium patens HOM05D006422 ORTHO05D007992 2.8e-49 199.5 211 45.5
Mapoly0021s0119 Marchantia polymorpha HOM05D006422 ORTHO05D007992 4.8e-49 198.7 175 53.7
Hma1.2p1_0534F.1_g173730 Hydrangea macrophylla HOM05D006422 ORTHO05D007992 1.8e-48 196.8 183 60.7
CSS0017479 Camellia sinensis var. sinensis HOM05D006422 ORTHO05D007992 5.3e-48 195.3 124 76.6
AagrBONN_evm.TU.Sc2ySwM_228.4709 Anthoceros agrestis HOM05D006422 ORTHO05D007992 2.6e-47 193.0 171 51.5
SMO364G0843 Selaginella moellendorffii HOM05D006422 ORTHO05D007992 4.5e-47 192.2 164 54.3
Gorai.002G101300 Gossypium raimondii HOM05D006422 ORTHO05D007992 4.0e-43 179.1 112 75.9
CSS0035518 Camellia sinensis var. sinensis HOM05D006422 ORTHO05D007992 4.4e-34 149.1 199 45.2
Oeu014126.1 Olea europaea HOM05D006422 ORTHO05D007992 1.7e-30 137.1 93 74.2
CBR_g3792 Chara braunii HOM05D006422 ORTHO05D007992 9.5e-29 131.3 173 38.7
Cre12.g502250 Chlamydomonas reinhardtii HOM05D006422 ORTHO05D007992 9.2e-24 114.8 227 33.9
MCO15G093 Micromonas commoda HOM05D006422 ORTHO05D007992 9.5e-21 104.8 201 31.8
Hund19396 Selenicereus undatus HOM05D006422 ORTHO05D007992 5.2e-19 99.0 107 54.2
PRCOL_00004658 Prasinoderma coloniale HOM05D006422 ORTHO05D007992 1.1e-16 91.3 211 33.2
Cre07.g325736 Chlamydomonas reinhardtii HOM05D006422 ORTHO05D007992 1.8e-16 90.5 203 28.1
Lj9A307T41 Lonicera japonica HOM05D003483 ORTHO05D004101 3.7e-09 66.2 207 27.1
Potri.003G020700 Populus trichocarpa HOM05D003483 ORTHO05D004101 8.3e-09 65.1 230 25.2
PSO017G4111 Papaver somniferum HOM05D003483 ORTHO05D004101 1.4e-08 64.3 166 24.1
CDE02G1133 Ceratophyllum demersum HOM05D003483 ORTHO05D004101 1.9e-08 63.9 171 24.6
ATR0684G013 Amborella trichopoda HOM05D003483 ORTHO05D004101 2.4e-08 63.5 170 23.5
Nitab4.5_0002245g0170 Nicotiana tabacum HOM05D003483 ORTHO05D004101 2.4e-08 63.5 244 23.8
Nitab4.5_0003819g0040 Nicotiana tabacum HOM05D003483 ORTHO05D004101 2.4e-08 63.5 172 24.4
vmacro01768 Vaccinium macrocarpon HOM05D003483 ORTHO05D004101 5.4e-08 62.4 243 24.3
Cpa.g.sc2.4 Carica papaya HOM05D003483 ORTHO05D004101 7.0e-08 62.0 172 25.0
MD15G1421400 Malus domestica HOM05D003483 ORTHO05D004101 9.2e-08 61.6 172 23.8
PGR142G0005 Punica granatum HOM05D003483 ORTHO05D004101 9.2e-08 61.6 206 24.3
AagrBONN_evm.TU.Sc2ySwM_344.1832 Anthoceros agrestis HOM05D003483 ORTHO05D004101 1.2e-07 61.2 165 26.7
Cc02_g22350 Coffea canephora HOM05D003483 ORTHO05D004101 1.2e-07 61.2 172 24.4
ECA240G0807 Erigeron canadensis HOM05D003483 ORTHO05D004101 1.2e-07 61.2 172 24.4
HanXRQChr03g0066831 Helianthus annuus HOM05D003483 ORTHO05D004101 1.2e-07 61.2 175 24.0
Pp3c23_15450 Physcomitrium patens HOM05D003483 ORTHO05D004101 1.2e-07 61.2 174 25.3
Zm00001eb054390 Zea mays HOM05D003483 ORTHO05D004101 1.2e-07 61.2 170 24.7
PGR142G1721 Punica granatum HOM05D003483 ORTHO05D004101 2.0e-07 60.5 237 24.9
Dinv19357 Davidia involucrata HOM05D003483 ORTHO05D004101 2.7e-07 60.1 222 25.7
Nn1g08897 Nelumbo nucifera HOM05D003483 ORTHO05D004101 2.7e-07 60.1 170 25.3
Pp3c3_12020 Physcomitrium patens HOM05D005663 ORTHO05D007258 2.7e-07 60.1 214 23.4
Potri.001G209600 Populus trichocarpa HOM05D003483 ORTHO05D004101 2.7e-07 60.1 170 25.9
GSVIVG01022995001 Vitis vinifera HOM05D003483 ORTHO05D004101 2.7e-07 60.1 171 25.1
Lj6g0022843 Lotus japonicus HOM05D003483 ORTHO05D004101 3.5e-07 59.7 220 24.5
TAR376G1167 Trochodendron aralioides HOM05D003483 ORTHO05D004101 3.5e-07 59.7 170 23.5
VMungo0540G1714 Vigna mungo HOM05D003483 ORTHO05D004101 3.5e-07 59.7 172 25.0
FvH4_5g29660 Fragaria vesca HOM05D003483 ORTHO05D004101 4.6e-07 59.3 235 25.1
Manes.07G014600 Manihot esculenta HOM05D003483 ORTHO05D004101 4.6e-07 59.3 170 25.9
Os03g0704100 Oryza sativa ssp. japonica HOM05D003483 ORTHO05D004101 4.6e-07 59.3 185 24.3
Glyma.08G185800 Glycine max HOM05D003483 ORTHO05D004101 6.0e-07 58.9 223 22.0
Glyma.15G047700 Glycine max HOM05D003483 ORTHO05D004101 6.0e-07 58.9 171 26.3
TAR381G1595 Trochodendron aralioides HOM05D003483 ORTHO05D004101 6.0e-07 58.9 170 25.3
Ciclev10002308m.g Citrus clementina HOM05D003483 ORTHO05D004101 7.8e-07 58.5 205 22.9
Migut.N01039 Erythranthe guttata HOM05D003483 ORTHO05D004101 7.8e-07 58.5 192 24.0
Sabra01G0161900 Salix brachista HOM05D003483 ORTHO05D004101 7.8e-07 58.5 225 28.4
Ca_00080_v3 Cicer arietinum L. HOM05D003483 ORTHO05D004101 1.0e-06 58.2 166 27.7
Hma1.2p1_0557F.1_g178380 Hydrangea macrophylla HOM05D003483 ORTHO05D004101 1.3e-06 57.8 242 24.0
Medtr2g007300 Medicago truncatula HOM05D003483 ORTHO05D004101 1.3e-06 57.8 169 25.4
Phvul.006G214200 Phaseolus vulgaris HOM05D003483 ORTHO05D004101 1.3e-06 57.8 170 23.5
GSVIVG01022998001 Vitis vinifera HOM05D003483 ORTHO05D004101 1.3e-06 57.8 170 23.5
MELO3C010097.2 Cucumis melo HOM05D003483 ORTHO05D004101 1.7e-06 57.4 174 22.4
CsaV3_1G045010 Cucumis sativus L. HOM05D003483 ORTHO05D004101 1.7e-06 57.4 180 22.2
Psat1g224560 Pisum sativum HOM05D003483 ORTHO05D004101 1.7e-06 57.4 166 24.1
FAN13G0976 Fragaria x ananassa HOM05D003483 ORTHO05D004101 2.3e-06 57.0 225 24.4
Glyma.15G047000 Glycine max HOM05D003483 ORTHO05D004101 2.3e-06 57.0 170 21.8
Lsat_1_v5_gn_9_118261 Lactuca sativa HOM05D003483 ORTHO05D004101 2.3e-06 57.0 168 24.4
Hund03480 Selenicereus undatus HOM05D005663 ORTHO05D007258 2.3e-06 57.0 254 22.4
unitig_699.g19861 Utricularia gibba HOM05D003483 ORTHO05D004101 2.3e-06 57.0 185 23.8
VMungo0540G0086 Vigna mungo HOM05D003483 ORTHO05D004101 3.0e-06 56.6 235 23.4
MD15G1421500 Malus domestica HOM05D003483 ORTHO05D004101 3.9e-06 56.2 227 24.7
TWI59G0966 Tripterygium wilfordii HOM05D003483 ORTHO05D004101 3.9e-06 56.2 179 24.6
Phvul.006G213100 Phaseolus vulgaris HOM05D003483 ORTHO05D004101 5.0e-06 55.8 224 23.7
Atru.chr6.836 Acer truncatum HOM05D003483 ORTHO05D004101 6.6e-06 55.5 170 24.1
AL5G14750 Arabidopsis lyrata HOM05D003483 ORTHO05D004101 6.6e-06 55.5 170 21.8
CiPaw.05G043400 Carya illinoinensis HOM05D003483 ORTHO05D004101 6.6e-06 55.5 231 25.1
Cre11.g478850 Chlamydomonas reinhardtii HOM05D003483 ORTHO05D004101 6.6e-06 55.5 203 24.6
FAN18G3047 Fragaria x ananassa HOM05D003483 ORTHO05D004101 6.6e-06 55.5 226 25.2
HanXRQChr06g0185051 Helianthus annuus HOM05D003483 ORTHO05D004101 6.6e-06 55.5 168 23.8
Thecc.02G039800 Theobroma cacao HOM05D003483 ORTHO05D004101 6.6e-06 55.5 175 24.6
ECA240G4797 Erigeron canadensis HOM05D003483 ORTHO05D008021 8.6e-06 55.1 174 23.6


User provided reference genes

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