Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR383G0182 Trochodendron aralioides HOM05D001780 ORTHO05D005322 8.2e-117 423.7 210 100.0
TAR362G0169 Trochodendron aralioides HOM05D001780 ORTHO05D005322 5.6e-81 304.7 174 88.5
Cfa015386 Carpinus fangiana HOM05D001780 ORTHO05D005322 5.1e-66 255.0 161 77.6
Haze_01199 Corylus avellana HOM05D001780 ORTHO05D005322 1.9e-65 253.1 155 80.0
Aqoxy2G02980_Aqoxy2G02981 Aquilegia oxysepala HOM05D001780 ORTHO05D005322 7.3e-65 251.1 165 74.5
QL06p008943 Quercus lobata HOM05D001780 ORTHO05D005322 1.1e-63 247.3 161 75.8
Gohir.D09G080700 Gossypium hirsutum HOM05D001780 ORTHO05D005322 2.4e-63 246.1 172 73.3
Gorai.006G096300 Gossypium raimondii HOM05D001780 ORTHO05D005322 6.8e-63 244.6 172 72.7
Peaxi162Scf00048g01820 Petunia axillaris HOM05D001780 ORTHO05D005322 6.8e-63 244.6 163 71.8
PGSC0003DMG400006289 Solanum tuberosum HOM05D001780 ORTHO05D005322 6.8e-63 244.6 163 71.8
CiPaw.01G148500 Carya illinoinensis HOM05D001780 ORTHO05D005322 8.9e-63 244.2 169 71.6
Dinv29743 Davidia involucrata HOM05D001780 ORTHO05D005322 8.9e-63 244.2 160 76.2
Duzib160G0626 Durio zibethinus HOM05D001780 ORTHO05D005322 8.9e-63 244.2 168 72.6
Thecc.02G218100 Theobroma cacao HOM05D001780 ORTHO05D005322 8.9e-63 244.2 168 71.4
Solyc01g080810.3 Solanum lycopersicum HOM05D001780 ORTHO05D005322 1.2e-62 243.8 164 71.3
Nitab4.5_0000700g0090 Nicotiana tabacum HOM05D001780 ORTHO05D005322 4.4e-62 241.9 163 70.6
CANSAT78G1960 Cannabis sativa HOM05D001780 ORTHO05D005322 2.2e-61 239.6 158 77.2
Gohir.A09G080700 Gossypium hirsutum HOM05D001780 ORTHO05D005322 1.1e-60 237.3 172 70.9
PSO210G4510 Papaver somniferum HOM05D001780 ORTHO05D005322 1.4e-60 236.9 163 71.2
MD13G1168400 Malus domestica HOM05D001780 ORTHO05D005322 1.9e-60 236.5 162 71.0
Nitab4.5_0000059g0580 Nicotiana tabacum HOM05D001780 ORTHO05D005322 4.2e-60 235.3 163 69.9
THA.LOC104818925 Tarenaya hassleriana HOM05D001780 ORTHO05D005322 4.2e-60 235.3 184 67.4
Migut.G00161 Erythranthe guttata HOM05D001780 ORTHO05D005322 7.1e-60 234.6 167 70.7
PSO170G3623 Papaver somniferum HOM05D001780 ORTHO05D005322 7.1e-60 234.6 163 71.2
MD16G1168800 Malus domestica HOM05D001780 ORTHO05D005322 2.7e-59 232.6 161 70.2
RcHm_v2.0_Chr4g0422271 Rosa chinensis HOM05D001780 ORTHO05D005322 4.6e-59 231.9 164 70.1
Prupe.1G136500 Prunus persica HOM05D001780 ORTHO05D005322 7.8e-59 231.1 154 72.7
GSVIVG01017762001 Vitis vinifera HOM05D001780 ORTHO05D005322 7.8e-59 231.1 167 71.3
Sopen01g030670 Solanum pennellii HOM05D001780 ORTHO05D005322 3.0e-58 229.2 164 68.3
CAN.G185.34 Capsicum annuum HOM05D001780 ORTHO05D005322 3.9e-58 228.8 163 67.5
DCAR_002465 Daucus carota HOM05D001780 ORTHO05D005322 6.6e-58 228.0 163 69.3
Nn3g18527 Nelumbo nucifera HOM05D001780 ORTHO05D005322 6.6e-58 228.0 154 76.0
PGR004G0386 Punica granatum HOM05D001780 ORTHO05D005322 1.1e-57 227.3 158 70.3
TWI09G1280 Tripterygium wilfordii HOM05D001780 ORTHO05D005322 1.5e-57 226.9 161 68.9
Ciclev10004211m.g Citrus clementina HOM05D001780 ORTHO05D005322 1.9e-57 226.5 161 70.2
Lalb_Chr15g0083491 Lupinus albus HOM05D001780 ORTHO05D005322 1.9e-57 226.5 169 66.3
A06p38600 Brassica napus HOM05D001780 ORTHO05D005322 3.3e-57 225.7 184 64.7
Cc03_g01890 Coffea canephora HOM05D001780 ORTHO05D005322 5.6e-57 224.9 166 68.1
MBI19_g44149_MAGBIO Magnolia biondii HOM05D001780 ORTHO05D005322 5.6e-57 224.9 170 70.0
SGA_v2.0_scaffold67G22635 Striga asiatica HOM05D001780 ORTHO05D005322 5.6e-57 224.9 166 66.9
VMungo1215G2474 Vigna mungo HOM05D001780 ORTHO05D005322 9.6e-57 224.2 165 66.7
BolC7t44489H Brassica oleracea HOM05D001780 ORTHO05D005322 1.3e-56 223.8 184 64.1
Carub.0008s0885 Capsella rubella HOM05D001780 ORTHO05D005322 1.3e-56 223.8 184 64.1
Glyma.17G026600 Glycine max HOM05D001780 ORTHO05D005322 1.3e-56 223.8 165 67.3
Sp2g19410 Schrenkiella parvula HOM05D001780 ORTHO05D005322 1.3e-56 223.8 184 64.7
AL8G22410 Arabidopsis lyrata HOM05D001780 ORTHO05D005322 1.6e-56 223.4 184 65.2
AL8G22430 Arabidopsis lyrata HOM05D001780 ORTHO05D005322 1.6e-56 223.4 184 65.2
BraA06t26775Z Brassica rapa HOM05D001780 ORTHO05D005322 1.6e-56 223.4 184 64.1
C07p39660 Brassica napus HOM05D001780 ORTHO05D005322 2.1e-56 223.0 184 64.7
CARHR182680 Cardamine hirsuta HOM05D001780 ORTHO05D005322 2.8e-56 222.6 184 64.1
Sc13g0003450 Simmondsia chinensis HOM05D001780 ORTHO05D005322 6.2e-56 221.5 163 68.1
Aa31sc180G20 Aethionema arabicum HOM05D001780 ORTHO05D005322 8.1e-56 221.1 184 62.5
AT5G49030 Arabidopsis thaliana HOM05D001780 ORTHO05D005322 1.8e-55 219.9 184 63.6
Phvul.003G105600 Phaseolus vulgaris HOM05D001780 ORTHO05D005322 2.4e-55 219.5 167 66.5
FAN12G1911 Fragaria x ananassa HOM05D001780 ORTHO05D005322 4.0e-55 218.8 162 68.5
FAN12G3693 Fragaria x ananassa HOM05D001780 ORTHO05D005322 5.3e-55 218.4 162 68.5
Sed0021413 Sechium edule HOM05D001780 ORTHO05D005322 5.3e-55 218.4 171 64.9
ClCG05G006110 Citrullus lanatus HOM05D001780 ORTHO05D005322 6.9e-55 218.0 171 66.1
ClCG00G005040 Citrullus lanatus HOM05D001780 ORTHO05D005322 9.0e-55 217.6 162 69.1
Psat1g153920 Pisum sativum HOM05D001780 ORTHO05D005322 9.0e-55 217.6 168 65.5
C02p57010 Brassica napus HOM05D001780 ORTHO05D005322 1.2e-54 217.2 184 63.6
BolC2t11771H Brassica oleracea HOM05D001780 ORTHO05D005322 1.2e-54 217.2 184 63.6
Ca_01936_v3 Cicer arietinum L. HOM05D001780 ORTHO05D005322 1.2e-54 217.2 168 64.3
Thhalv10003524m.g Eutrema salsugineum HOM05D001780 ORTHO05D005322 1.5e-54 216.9 184 63.0
FAN17G0722 Fragaria x ananassa HOM05D001780 ORTHO05D005322 1.5e-54 216.9 161 67.7
BcaC03g17692 Brassica carinata HOM05D001780 ORTHO05D005322 2.6e-54 216.1 184 63.6
FAN07G2352 Fragaria x ananassa HOM05D000639 ORTHO05D005322 2.6e-54 216.1 178 63.5
HanXRQChr03g0080971 Helianthus annuus HOM05D001780 ORTHO05D005322 2.6e-54 216.1 163 66.9
CsaV3_3G014640 Cucumis sativus L. HOM05D001780 ORTHO05D005322 4.4e-54 215.3 163 67.5
Rhsim04G0222400 Rhododendron simsii HOM05D001780 ORTHO05D005322 5.8e-54 214.9 153 72.5
FvH4_4g18060 Fragaria vesca HOM05D001780 ORTHO05D005322 7.6e-54 214.5 158 69.6
Lj6g0027734 Lotus japonicus HOM05D001780 ORTHO05D005322 1.3e-53 213.8 170 64.1
SalBow2G1454 Salvia bowleyana HOM05D001780 ORTHO05D005322 2.2e-53 213.0 172 64.5
A02p37850 Brassica napus HOM05D001780 ORTHO05D005322 4.9e-53 211.8 184 62.5
BraA02t08767Z Brassica rapa HOM05D001780 ORTHO05D005322 4.9e-53 211.8 184 62.5
Manes.03G195400 Manihot esculenta HOM05D001780 ORTHO05D005322 8.4e-53 211.1 161 68.9
vmacro08155 Vaccinium macrocarpon HOM05D001780 ORTHO05D005322 1.1e-52 210.7 150 72.0
Potri.010G014500 Populus trichocarpa HOM05D001780 ORTHO05D005322 3.2e-52 209.1 172 64.0
CDE01G0296 Ceratophyllum demersum HOM05D001780 ORTHO05D005322 7.1e-52 208.0 153 67.3
Eucgr.H03916 Eucalyptus grandis HOM05D001780 ORTHO05D005322 1.6e-51 206.8 164 64.0
Lj6A676G61 Lonicera japonica HOM05D001780 ORTHO05D005322 1.6e-51 206.8 120 81.7
ATR0796G005 Amborella trichopoda HOM05D001780 ORTHO05D005322 2.1e-51 206.5 163 63.2
arahy.Tifrunner.gnm1.ann1.A68CME Arachis hypogaea HOM05D001780 ORTHO05D005322 2.1e-51 206.5 163 65.0
arahy.Tifrunner.gnm1.ann1.I7AL06 Arachis hypogaea HOM05D001780 ORTHO05D005322 2.1e-51 206.5 154 68.2
ECA240G0962 Erigeron canadensis HOM05D001780 ORTHO05D005322 3.5e-51 205.7 163 63.8
Medtr2g436760 Medicago truncatula HOM05D001780 ORTHO05D005322 4.6e-51 205.3 168 60.7
Hund03251 Selenicereus undatus HOM05D001780 ORTHO05D005322 3.3e-49 199.1 157 65.6
Os02g0778200 Oryza sativa ssp. japonica HOM05D001780 ORTHO05D005322 1.3e-48 197.2 138 69.6
Zm00001eb256880 Zea mays HOM05D001780 ORTHO05D005322 1.4e-47 193.7 114 79.8
Ah.01g003180 Amaranthus hybridus HOM05D001780 ORTHO05D005322 4.0e-47 192.2 163 62.0
Atru.chr4.2840 Acer truncatum HOM05D001780 ORTHO05D005322 1.2e-46 190.7 145 66.9
HPP92_016436 Vanilla planifolia HOM05D001780 ORTHO05D005322 3.8e-45 185.7 140 66.4
Sabra10G0009300 Salix brachista HOM05D001780 ORTHO05D005322 1.9e-44 183.3 97 86.6
AUR62014941 Chenopodium quinoa HOM05D001780 ORTHO05D005322 2.4e-44 183.0 118 75.4
AUR62029200 Chenopodium quinoa HOM05D001780 ORTHO05D005322 4.2e-44 182.2 118 75.4
COL.COLO4_34741 Corchorus olitorius HOM05D001780 ORTHO05D005322 9.3e-44 181.0 168 56.0
EL10Ac9g22594 Beta vulgaris HOM05D001780 ORTHO05D005322 1.0e-42 177.6 164 59.1
Cpa.g.sc16.173 Carica papaya HOM05D001780 ORTHO05D005322 1.0e-42 177.6 96 81.2
CDE12G0042 Ceratophyllum demersum HOM05D001780 ORTHO05D005322 3.0e-42 176.0 96 82.3
unitig_0.g2594 Utricularia gibba HOM05D001780 ORTHO05D005322 6.9e-39 164.9 100 78.0
Mapoly0002s0241 Marchantia polymorpha HOM05D001780 ORTHO05D005322 1.0e-37 161.0 105 68.6
MBI19_g29219_MAGBIO Magnolia biondii HOM05D001780 ORTHO05D005322 2.9e-37 159.5 167 58.1
Pp3c17_5990 Physcomitrium patens HOM05D001780 ORTHO05D005322 4.9e-37 158.7 112 65.2
SEGI_15432 Sequoiadendron giganteum HOM05D001780 ORTHO05D005322 2.1e-32 143.3 116 60.3
AagrBONN_evm.TU.Sc2ySwM_340.179 Anthoceros agrestis HOM05D001780 ORTHO05D005322 2.6e-30 136.3 85 70.6
SMO230G0004 Selaginella moellendorffii HOM05D001780 ORTHO05D005322 1.3e-29 134.0 100 60.0
SMO367G0518 Selaginella moellendorffii HOM05D001780 ORTHO05D005322 1.3e-29 134.0 100 60.0
PRCOL_00005558 Prasinoderma coloniale HOM05D001780 ORTHO05D005322 1.8e-23 113.6 86 60.5
Cre16.g689871 Chlamydomonas reinhardtii HOM05D001780 ORTHO05D005322 3.1e-23 112.8 89 57.3
Pp3s46_440 Physcomitrium patens HOM05D001780 ORTHO05D005322 3.2e-20 102.8 88 53.4
MCO13G360 Micromonas commoda HOM05D001780 ORTHO05D005322 1.2e-19 100.9 67 61.2
COL.COLO4_04960 Corchorus olitorius HOM05D001780 ORTHO05D005322 5.1e-18 95.5 98 54.1
Lsat_1_v5_gn_3_30900 Lactuca sativa HOM05D001780 ORTHO05D005322 1.5e-17 94.0 52 80.8
Lsat_1_v5_gn_7_51800 Lactuca sativa HOM05D001780 ORTHO05D022113 1.5e-17 94.0 52 80.8
Ca_28665_v3 Cicer arietinum L. HOM05D001780 ORTHO05D005322 4.5e-14 82.4 79 48.1
CSS0010227 Camellia sinensis var. sinensis HOM05D001780 ORTHO05D022113 5.0e-13 79.0 145 37.2
COL.COLO4_34834 Corchorus olitorius HOM05D001780 ORTHO05D005322 1.1e-12 77.8 35 94.3
TPR.G39347 Trifolium pratense HOM05D001780 ORTHO05D005322 4.2e-12 75.9 44 77.3
Cfa026798 Carpinus fangiana HOM05D001780 ORTHO05D005322 1.2e-11 74.3 79 46.8
CBR_g56609 Chara braunii HOM05D001780 ORTHO05D005322 3.0e-10 69.7 43 72.1
QL06p008955 Quercus lobata HOM05D001780 ORTHO05D013332 1.1e-09 67.8 50 64.0
Aqoxy2G02510 Aquilegia oxysepala HOM05D001780 ORTHO05D005322 2.4e-07 60.1 35 74.3
TPR.G13843 Trifolium pratense HOM05D001780 ORTHO05D005322 1.2e-06 57.8 35 71.4
TPR.G7653 Trifolium pratense HOM05D001780 ORTHO05D005322 1.2e-06 57.8 72 47.2
TPR.G13850 Trifolium pratense HOM05D001780 ORTHO05D005322 4.5e-06 55.8 70 48.6


User provided reference genes

Program Settings