Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR383G0149 Trochodendron aralioides HOM05D005868 ORTHO05D006964 1.4e-143 513.1 275 100.0
Nn2g12624 Nelumbo nucifera HOM05D005868 ORTHO05D006964 4.3e-97 358.6 270 66.3
CSS0026098 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 9.5e-97 357.5 269 70.3
Aqoxy6G01600 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 6.1e-96 354.8 269 67.7
Aqoxy7G02135 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 6.1e-96 354.8 269 67.7
Manes.07G113800 Manihot esculenta HOM05D005868 ORTHO05D006964 2.3e-95 352.8 269 71.7
Thecc.09G124300 Theobroma cacao HOM05D005868 ORTHO05D006964 2.0e-94 349.7 269 65.1
Duzib150G0047 Durio zibethinus HOM05D005868 ORTHO05D006964 4.4e-94 348.6 269 65.1
Actinidia40461 Actinidia chinensis HOM05D005868 ORTHO05D006964 2.2e-93 346.3 269 65.4
Dinv41522 Davidia involucrata HOM05D005868 ORTHO05D006964 3.7e-93 345.5 245 73.1
Cpa.g.sc165.3 Carica papaya HOM05D005868 ORTHO05D006964 1.4e-92 343.6 268 65.3
Prupe.7G240900 Prunus persica HOM05D005868 ORTHO05D006964 1.9e-92 343.2 269 64.7
CiPaw.06G052800 Carya illinoinensis HOM05D005868 ORTHO05D006964 3.2e-92 342.4 269 65.8
vmacro16514 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 5.4e-92 341.7 246 69.1
CAN.G377.18 Capsicum annuum HOM05D005868 ORTHO05D006964 7.0e-92 341.3 279 62.0
QL02p087973 Quercus lobata HOM05D005868 ORTHO05D006964 7.0e-92 341.3 269 64.3
COL.COLO4_11936 Corchorus olitorius HOM05D005868 ORTHO05D006964 9.2e-92 340.9 268 70.5
Gorai.009G018600 Gossypium raimondii HOM05D005868 ORTHO05D006964 9.2e-92 340.9 269 64.7
PSO170G5445 Papaver somniferum HOM05D005868 ORTHO05D006964 2.7e-91 339.3 276 63.8
Atru.chr7.1216 Acer truncatum HOM05D005868 ORTHO05D006964 3.5e-91 339.0 246 68.3
Peaxi162Scf00984g00020 Petunia axillaris HOM05D005868 ORTHO05D006964 3.5e-91 339.0 279 65.9
Gohir.A05G017300 Gossypium hirsutum HOM05D005868 ORTHO05D006964 4.6e-91 338.6 250 67.2
PGSC0003DMG402020668 Solanum tuberosum HOM05D005868 ORTHO05D006964 7.8e-91 337.8 279 61.3
Solyc12g006670.3 Solanum lycopersicum HOM05D005868 ORTHO05D006964 1.3e-90 337.0 279 61.6
Rhsim01G0074500 Rhododendron simsii HOM05D005868 ORTHO05D006964 1.7e-90 336.7 270 64.4
Sopen12g002620 Solanum pennellii HOM05D005868 ORTHO05D006964 1.7e-90 336.7 279 61.6
Glyma.08G274300 Glycine max HOM05D005868 ORTHO05D006964 2.3e-90 336.3 267 62.9
VMungo0251G3516 Vigna mungo HOM05D005868 ORTHO05D006964 3.0e-90 335.9 267 63.3
MELO3C004517.2 Cucumis melo HOM05D005868 ORTHO05D006964 3.9e-90 335.5 249 66.3
Glyma.18G237200 Glycine max HOM05D005868 ORTHO05D006964 3.9e-90 335.5 269 63.2
PSO455G0232 Papaver somniferum HOM05D005868 ORTHO05D006964 5.0e-90 335.1 277 62.8
Nitab4.5_0005139g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 8.6e-90 334.3 279 62.0
Ciclev10009129m.g Citrus clementina HOM05D005868 ORTHO05D006964 1.9e-89 333.2 246 65.9
FAN13G1606 Fragaria x ananassa HOM05D001017 ORTHO05D006964 2.5e-89 332.8 249 66.7
Lalb_Chr12g0197851 Lupinus albus HOM05D005868 ORTHO05D006964 3.3e-89 332.4 249 66.3
FvH4_5g12980 Fragaria vesca HOM05D005868 ORTHO05D006964 4.3e-89 332.0 249 66.7
Phvul.003G286500 Phaseolus vulgaris HOM05D005868 ORTHO05D006964 5.6e-89 331.6 267 62.5
MD15G1175100 Malus domestica HOM05D005868 ORTHO05D006964 7.3e-89 331.3 249 66.3
Lj3g0005718 Lotus japonicus HOM05D005868 ORTHO05D006964 1.2e-88 330.5 262 64.1
RcHm_v2.0_Chr2g0088741 Rosa chinensis HOM05D005868 ORTHO05D006964 1.2e-88 330.5 249 66.7
RcHm_v2.0_Chr2g0088971 Rosa chinensis HOM05D005868 ORTHO05D006964 1.2e-88 330.5 249 66.7
CsaV3_2G002760 Cucumis sativus L. HOM05D005868 ORTHO05D006964 2.1e-88 329.7 270 62.2
FAN08G1464 Fragaria x ananassa HOM05D005868 ORTHO05D006964 3.6e-88 328.9 249 66.3
Gohir.D05G018200 Gossypium hirsutum HOM05D005868 ORTHO05D006964 3.6e-88 328.9 245 66.9
FAN18G3119 Fragaria x ananassa HOM05D005868 ORTHO05D006964 1.4e-87 327.0 249 65.9
MD02G1034400 Malus domestica HOM05D005868 ORTHO05D006964 1.4e-87 327.0 249 71.5
Medtr8g073315 Medicago truncatula HOM05D005868 ORTHO05D006964 1.4e-87 327.0 246 66.7
DCAR_009552 Daucus carota HOM05D005868 ORTHO05D006964 5.2e-87 325.1 269 60.2
AT2G25570 Arabidopsis thaliana HOM05D005868 ORTHO05D006964 1.2e-86 323.9 252 63.5
Lj2A993T36 Lonicera japonica HOM05D005868 ORTHO05D006964 1.5e-86 323.6 243 66.3
MSTRG.20108 Avicennia marina HOM05D005868 ORTHO05D006964 2.0e-86 323.2 249 64.7
BcaB08g35195 Brassica carinata HOM05D005868 ORTHO05D006964 2.0e-86 323.2 270 60.4
Carub.0004s0528 Capsella rubella HOM05D005868 ORTHO05D006964 2.0e-86 323.2 252 63.1
Sp4g04970 Schrenkiella parvula HOM05D005868 ORTHO05D006964 2.0e-86 323.2 252 63.9
Zm00001eb205580 Zea mays HOM05D005868 ORTHO05D006964 2.0e-86 323.2 253 64.4
HPP92_000663 Vanilla planifolia HOM05D005868 ORTHO05D006964 4.4e-86 322.0 272 59.2
THA.LOC104808997 Tarenaya hassleriana HOM05D005868 ORTHO05D006964 5.8e-86 321.6 249 63.5
AL4G17010 Arabidopsis lyrata HOM05D005868 ORTHO05D006964 7.5e-86 321.2 254 62.6
C08p38550 Brassica napus HOM05D005868 ORTHO05D006964 1.3e-85 320.5 264 60.6
BolC8t51427H Brassica oleracea HOM05D005868 ORTHO05D006964 1.3e-85 320.5 264 60.6
BcaC07g40857 Brassica carinata HOM05D005868 ORTHO05D006964 1.7e-85 320.1 264 60.6
SHI18654 Sapria himalayana HOM05D005868 ORTHO05D006964 2.2e-85 319.7 249 65.9
Os02g0202600 Oryza sativa ssp. japonica HOM05D005868 ORTHO05D006964 2.9e-85 319.3 251 63.3
Sed0015563 Sechium edule HOM05D005868 ORTHO05D006964 2.9e-85 319.3 249 71.1
ATR0322G055 Amborella trichopoda HOM05D005868 ORTHO05D006964 4.9e-85 318.5 246 63.8
arahy.Tifrunner.gnm1.ann1.1Z3A91 Arachis hypogaea HOM05D005868 ORTHO05D006964 4.9e-85 318.5 248 63.3
QL93p0150_0012 Quercus lobata HOM05D005868 ORTHO05D006964 4.1e-84 315.5 235 66.4
A09p55560 Brassica napus HOM05D005868 ORTHO05D006964 5.4e-84 315.1 270 59.3
BraA09t40958Z Brassica rapa HOM05D005868 ORTHO05D006964 5.4e-84 315.1 270 59.3
HPP92_000683 Vanilla planifolia HOM05D005868 ORTHO05D006964 7.1e-84 314.7 272 57.7
Eucgr.C04189 Eucalyptus grandis HOM05D005868 ORTHO05D006964 1.2e-83 313.9 246 63.0
GSVIVG01015515001 Vitis vinifera HOM05D000032 ORTHO05D001620 1.6e-83 313.5 269 60.6
Potri.001G219400 Populus trichocarpa HOM05D005868 ORTHO05D006964 1.0e-82 310.8 245 70.2
unitig_37.g12428 Utricularia gibba HOM05D005868 ORTHO05D006964 1.3e-82 310.5 248 63.3
DCAR_023114 Daucus carota HOM05D005868 ORTHO05D006964 3.0e-82 309.3 286 55.6
Migut.N02220 Erythranthe guttata HOM05D005868 ORTHO05D006964 8.6e-82 307.8 271 59.8
Lsat_1_v5_gn_2_95580 Lactuca sativa HOM05D005868 ORTHO05D006964 1.1e-81 307.4 269 58.4
ClCG11G002940 Citrullus lanatus HOM05D005868 ORTHO05D006964 1.5e-81 307.0 316 53.5
Aa31LG6G5930 Aethionema arabicum HOM05D005868 ORTHO05D006964 1.9e-81 306.6 266 59.8
RcHm_v2.0_Chr2g0089021 Rosa chinensis HOM05D005868 ORTHO05D006964 3.3e-81 305.8 243 64.6
ECA238G3092 Erigeron canadensis HOM05D005868 ORTHO05D006964 5.6e-81 305.1 269 56.1
Sabra16G0124800 Salix brachista HOM05D005868 ORTHO05D006964 9.5e-81 304.3 252 63.5
Haze_25605 Corylus avellana HOM05D005868 ORTHO05D006964 1.4e-79 300.4 293 56.7
CANSAT35G1449 Cannabis sativa HOM05D005868 ORTHO05D006964 3.1e-79 299.3 276 63.4
HanXRQChr07g0197781 Helianthus annuus HOM05D005868 ORTHO05D006964 6.8e-79 298.1 236 61.0
Medtr0040s0110 Medicago truncatula HOM05D005868 ORTHO05D006964 4.9e-77 292.0 245 61.2
TPR.G21777 Trifolium pratense HOM05D005868 ORTHO05D006964 1.1e-76 290.8 267 56.2
Cc06_g08680 Coffea canephora HOM05D005868 ORTHO05D006964 2.3e-74 283.1 206 68.4
CSS0035520 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 4.0e-71 272.3 298 51.7
CSS0040694 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 6.8e-71 271.6 298 50.7
Eucgr.C04191 Eucalyptus grandis HOM05D005868 ORTHO05D006964 1.4e-68 263.8 202 63.9
Prupe.6G277700 Prunus persica HOM05D005868 ORTHO05D006964 1.4e-68 263.8 269 53.2
Thhalv10023629m.g Eutrema salsugineum HOM05D005868 ORTHO05D006964 2.1e-67 260.0 165 74.5
CARHR115770 Cardamine hirsuta HOM05D005868 ORTHO05D006964 1.7e-66 256.9 181 68.0
EL10Ac8g18635 Beta vulgaris HOM05D005868 ORTHO05D006964 3.0e-66 256.1 269 52.4
Hund09137 Selenicereus undatus HOM05D005868 ORTHO05D006964 5.1e-66 255.4 273 57.5
PGR102G1613 Punica granatum HOM05D005868 ORTHO05D006964 8.7e-66 254.6 269 55.4
Ca_25916_v3 Cicer arietinum L. HOM05D005868 ORTHO05D006964 1.1e-65 254.2 249 61.0
arahy.Tifrunner.gnm1.ann1.T37JIE Arachis hypogaea HOM05D005868 ORTHO05D006964 1.5e-65 253.8 248 54.0
CAN.G377.12 Capsicum annuum HOM05D005868 ORTHO05D006964 4.3e-65 252.3 279 49.5
Sc08g0006690 Simmondsia chinensis HOM05D005868 ORTHO05D006964 9.6e-65 251.1 267 58.1
Ah.09g226020 Amaranthus hybridus HOM05D005868 ORTHO05D006964 2.8e-64 249.6 245 60.4
SGA_v2.0_scaffold120G32883 Striga asiatica HOM05D005868 ORTHO05D006964 3.6e-64 249.2 245 61.2
TWI32G0760 Tripterygium wilfordii HOM05D005868 ORTHO05D006964 6.9e-63 245.0 250 59.2
HanXRQChr14g0452021 Helianthus annuus HOM05D005868 ORTHO05D006964 6.4e-61 238.4 236 53.4
SEGI_01723 Sequoiadendron giganteum HOM05D005868 ORTHO05D006964 6.4e-61 238.4 253 48.2
AUR62013373 Chenopodium quinoa HOM05D005868 ORTHO05D006964 8.4e-61 238.0 269 55.4
Nitab4.5_0010819g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 2.6e-54 216.5 162 67.3
SalBow5G0777 Salvia bowleyana HOM05D005868 ORTHO05D006964 8.4e-53 211.5 290 48.6
CDE04G0864 Ceratophyllum demersum HOM05D005868 ORTHO05D006964 7.1e-52 208.4 213 60.1
MBI04_g07645_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 1.6e-48 197.2 168 61.9
Nitab4.5_0002556g0090 Nicotiana tabacum HOM05D005868 ORTHO05D006964 1.6e-48 197.2 152 64.5
vmacro20542 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 1.0e-45 188.0 340 40.6
Mapoly0058s0058 Marchantia polymorpha HOM05D005868 ORTHO05D006964 8.2e-40 168.3 258 39.1
Pp3c21_8470 Physcomitrium patens HOM05D005868 ORTHO05D006964 7.2e-36 155.2 286 37.8
AUR62033475 Chenopodium quinoa HOM05D005868 ORTHO05D006964 6.7e-34 148.7 164 48.2
FAN23G1471 Fragaria x ananassa HOM05D005868 ORTHO05D006964 8.7e-34 148.3 116 67.2
FvH4_1g05000 Fragaria vesca HOM05D005868 ORTHO05D006964 3.0e-26 123.2 77 77.9
RcHm_v2.0_Chr2g0088781 Rosa chinensis HOM05D005868 ORTHO05D006964 7.4e-25 118.6 86 67.4
Eucgr.C03944 Eucalyptus grandis HOM05D005868 ORTHO05D006964 1.5e-22 110.9 110 50.0
RcHm_v2.0_Chr2g0088921 Rosa chinensis HOM05D005868 ORTHO05D006964 7.7e-22 108.6 152 42.8
RcHm_v2.0_Chr2g0088941 Rosa chinensis HOM05D005868 ORTHO05D006964 3.0e-18 96.7 132 43.9
RcHm_v2.0_Chr2g0088761 Rosa chinensis HOM05D005868 ORTHO05D006964 7.7e-14 82.0 91 45.1
CBR_g783 Chara braunii HOM05D005868 ORTHO05D006964 9.4e-12 75.1 144 36.1
MBI04_g07643_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 9.4e-12 75.1 63 61.9
CARHR115780 Cardamine hirsuta HOM05D005868 ORTHO05D006964 3.0e-10 70.1 70 48.6
FAN02G0970 Fragaria x ananassa HOM05D023359 ORTHO05D006964 5.2e-10 69.3 64 51.6
RcHm_v2.0_Chr3g0491871 Rosa chinensis HOM05D005868 ORTHO05D006964 3.3e-09 66.6 68 50.0
RcHm_v2.0_Chr2g0088771 Rosa chinensis HOM05D005868 ORTHO05D006964 4.4e-09 66.2 37 83.8
RcHm_v2.0_Chr2g0088931 Rosa chinensis HOM05D005868 ORTHO05D006964 4.4e-09 66.2 37 83.8
Psat7g152720 Pisum sativum HOM05D005868 ORTHO05D006964 6.3e-08 62.4 62 53.2
Eucgr.L03701 Eucalyptus grandis HOM05D005868 ORTHO05D006964 3.1e-07 60.1 48 58.3
RcHm_v2.0_Chr5g0066691 Rosa chinensis HOM05D005868 ORTHO05D006964 4.5e-06 56.2 51 56.9


User provided reference genes

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