Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR383G0111 Trochodendron aralioides HOM05D003361 ORTHO05D003760 4.2e-110 402.5 307 100.0
TAR626G1829 Trochodendron aralioides HOM05D003361 ORTHO05D003760 2.9e-87 326.6 307 86.6
Lj9A497T71 Lonicera japonica HOM05D003361 ORTHO05D003760 7.0e-81 305.4 300 87.3
Nn8g39646 Nelumbo nucifera HOM05D003361 ORTHO05D003760 3.8e-79 299.7 305 85.2
Actinidia15974 Actinidia chinensis HOM05D003361 ORTHO05D003760 5.0e-79 299.3 228 82.9
Haze_16605 Corylus avellana HOM05D003361 ORTHO05D003760 9.4e-78 295.0 229 65.1
Solyc03g117420.4 Solanum lycopersicum HOM05D003361 ORTHO05D003760 6.8e-76 288.9 300 83.7
GSVIVG01017472001 Vitis vinifera HOM05D003361 ORTHO05D003760 6.8e-76 288.9 222 82.9
MBI14_g24987_MAGBIO Magnolia biondii HOM05D003361 ORTHO05D003760 1.3e-74 284.6 300 84.0
Sopen03g036300 Solanum pennellii HOM05D003361 ORTHO05D003760 2.2e-74 283.9 300 83.0
Dinv30637 Davidia involucrata HOM05D003361 ORTHO05D003760 3.7e-74 283.1 222 82.9
Oeu029903.1 Olea europaea HOM05D003361 ORTHO05D003760 4.8e-74 282.7 224 80.8
CAN.G407.25 Capsicum annuum HOM05D003361 ORTHO05D003760 6.3e-74 282.3 300 83.0
SalBow7G0810 Salvia bowleyana HOM05D003361 ORTHO05D003760 1.4e-73 281.2 309 80.9
Aqoxy7G02456 Aquilegia oxysepala HOM05D003361 ORTHO05D003760 1.8e-73 280.8 311 82.0
Peaxi162Scf00332g00127 Petunia axillaris HOM05D003361 ORTHO05D003760 1.8e-73 280.8 300 83.3
Nitab4.5_0002322g0060 Nicotiana tabacum HOM05D003361 ORTHO05D003760 3.1e-73 280.0 321 63.6
CSS0014218 Camellia sinensis var. sinensis HOM05D003361 ORTHO05D003760 7.0e-73 278.9 222 82.0
Ciclev10025249m.g Citrus clementina HOM05D003361 ORTHO05D003760 7.0e-73 278.9 302 83.4
Dinv41445 Davidia involucrata HOM05D003361 ORTHO05D003760 9.1e-73 278.5 307 81.8
Rhsim12G0189300 Rhododendron simsii HOM05D003361 ORTHO05D003760 9.1e-73 278.5 228 80.7
SalBow7G3482 Salvia bowleyana HOM05D003361 ORTHO05D003760 9.1e-73 278.5 223 78.9
Nitab4.5_0001017g0020 Nicotiana tabacum HOM05D003361 ORTHO05D003760 5.9e-72 275.8 305 81.3
RcHm_v2.0_Chr2g0134401 Rosa chinensis HOM05D003361 ORTHO05D003760 5.9e-72 275.8 226 78.3
Hma1.2p1_0461F.1_g157700 Hydrangea macrophylla HOM05D003361 ORTHO05D003760 1.0e-71 275.0 171 79.5
CiPaw.01G250600 Carya illinoinensis HOM05D003361 ORTHO05D003760 1.3e-71 274.6 304 83.2
Thecc.06G033100 Theobroma cacao HOM05D003361 ORTHO05D003760 2.9e-71 273.5 222 79.3
GSVIVG01012857001 Vitis vinifera HOM05D003361 ORTHO05D003760 2.9e-71 273.5 224 79.9
QL05p032608 Quercus lobata HOM05D003361 ORTHO05D003760 3.8e-71 273.1 226 77.4
Nn2g12188 Nelumbo nucifera HOM05D003361 ORTHO05D003760 6.6e-71 272.3 302 82.8
COL.COLO4_11855 Corchorus olitorius HOM05D003361 ORTHO05D003760 8.6e-71 271.9 223 78.9
Atru.chr1.2849 Acer truncatum HOM05D003361 ORTHO05D003760 1.9e-70 270.8 302 81.1
Lj4g0018391 Lotus japonicus HOM05D003361 ORTHO05D003760 1.9e-70 270.8 304 81.2
CiPaw.02G158600 Carya illinoinensis HOM05D003361 ORTHO05D003760 2.5e-70 270.4 304 81.6
HanXRQChr17g0570311 Helianthus annuus HOM05D003361 ORTHO05D003760 3.3e-70 270.0 307 79.5
vmacro16874 Vaccinium macrocarpon HOM05D003361 ORTHO05D003760 4.2e-70 269.6 228 78.1
MELO3C023445.2 Cucumis melo HOM05D003361 ORTHO05D003760 9.5e-70 268.5 228 57.9
Gohir.A08G090300 Gossypium hirsutum HOM05D003361 ORTHO05D003760 9.5e-70 268.5 224 78.6
DCAR_025527 Daucus carota HOM05D003361 ORTHO05D003760 1.2e-69 268.1 300 66.3
Cc04_g04660 Coffea canephora HOM05D003361 ORTHO05D003760 1.6e-69 267.7 300 81.0
Prupe.3G092900 Prunus persica HOM05D003361 ORTHO05D003760 2.8e-69 266.9 222 78.4
TWI75G0489 Tripterygium wilfordii HOM05D003361 ORTHO05D003760 4.7e-69 266.2 304 79.9
CANSAT56G3261 Cannabis sativa HOM05D003361 ORTHO05D003760 6.1e-69 265.8 307 80.1
AUR62020008 Chenopodium quinoa HOM05D003361 ORTHO05D003760 1.0e-68 265.0 307 78.2
Dinv36449 Davidia involucrata HOM05D003361 ORTHO05D003760 1.0e-68 265.0 222 79.7
Duzib235G0043 Durio zibethinus HOM05D003361 ORTHO05D003760 2.3e-68 263.8 222 77.5
MSTRG.22764 Avicennia marina HOM05D003361 ORTHO05D003760 3.0e-68 263.5 304 79.3
Gohir.D08G101300 Gossypium hirsutum HOM05D003361 ORTHO05D003760 4.0e-68 263.1 224 78.1
Gorai.004G109300 Gossypium raimondii HOM05D003361 ORTHO05D003760 4.0e-68 263.1 224 78.1
Sabra06G0044400 Salix brachista HOM05D003361 ORTHO05D003760 4.0e-68 263.1 228 77.2
Thecc.09G137400 Theobroma cacao HOM05D003361 ORTHO05D003760 4.0e-68 263.1 303 80.2
Atru.chr7.2012 Acer truncatum HOM05D003361 ORTHO05D003760 5.2e-68 262.7 307 80.1
Aa31LG7G360 Aethionema arabicum HOM05D003361 ORTHO05D003760 5.2e-68 262.7 224 75.4
AUR62011226 Chenopodium quinoa HOM05D003361 ORTHO05D003760 8.9e-68 261.9 307 78.2
Duzib160G0541 Durio zibethinus HOM05D003361 ORTHO05D003760 8.9e-68 261.9 302 79.5
FAN09G2631 Fragaria x ananassa HOM05D003361 ORTHO05D003760 2.0e-67 260.8 224 75.4
EL10Ac8g18785 Beta vulgaris HOM05D003361 ORTHO05D003760 2.6e-67 260.4 308 79.5
Lsat_1_v5_gn_5_8861 Lactuca sativa HOM05D003361 ORTHO05D003760 2.6e-67 260.4 305 79.7
MD02G1018400 Malus domestica HOM05D003361 ORTHO05D003760 5.7e-67 259.2 228 76.8
FAN05G3872 Fragaria x ananassa HOM05D003361 ORTHO05D003760 7.5e-67 258.8 223 75.8
Hund00496 Selenicereus undatus HOM05D003361 ORTHO05D003760 9.8e-67 258.5 225 76.0
Hund21595 Selenicereus undatus HOM05D003361 ORTHO05D003760 9.8e-67 258.5 228 76.3
TWI12G0888 Tripterygium wilfordii HOM05D003361 ORTHO05D003760 1.3e-66 258.1 305 78.0
Manes.11G061100 Manihot esculenta HOM05D003361 ORTHO05D003760 1.7e-66 257.7 223 78.9
AL1G27850 Arabidopsis lyrata HOM05D003361 ORTHO05D003760 2.8e-66 256.9 222 75.7
Migut.I00738 Erythranthe guttata HOM05D003361 ORTHO05D003760 2.8e-66 256.9 303 79.5
MSTRG.11160 Avicennia marina HOM05D003361 ORTHO05D003760 3.7e-66 256.5 307 78.8
CsaV3_7G032160 Cucumis sativus L. HOM05D003361 ORTHO05D003760 3.7e-66 256.5 222 56.8
FvH4_6g29180 Fragaria vesca HOM05D003361 ORTHO05D003760 4.9e-66 256.1 222 75.2
SGA_v2.0_scaffold37G14747 Striga asiatica HOM05D003361 ORTHO05D003760 6.3e-66 255.8 307 79.8
PGR031G1162 Punica granatum HOM05D003361 ORTHO05D003760 8.3e-66 255.4 169 73.4
FAN14G3167 Fragaria x ananassa HOM05D003361 ORTHO05D003760 1.1e-65 255.0 222 74.8
BcaC05g25516 Brassica carinata HOM05D003361 ORTHO05D003760 1.4e-65 254.6 222 74.8
Ca_21637_v3 Cicer arietinum L. HOM05D003361 ORTHO05D003760 1.4e-65 254.6 224 76.3
QL02p090717 Quercus lobata HOM05D003361 ORTHO05D003760 1.4e-65 254.6 170 72.9
Carub.0001s1551 Capsella rubella HOM05D003361 ORTHO05D003760 1.8e-65 254.2 222 75.2
COL.COLO4_33367 Corchorus olitorius HOM05D003361 ORTHO05D003760 1.8e-65 254.2 224 75.9
Thhalv10007169m.g Eutrema salsugineum HOM05D003361 ORTHO05D003760 1.8e-65 254.2 222 73.4
FAN02G1685 Fragaria x ananassa HOM05D003361 ORTHO05D003760 1.8e-65 254.2 224 75.0
ClCG09G003110 Citrullus lanatus HOM05D003361 ORTHO05D003760 2.4e-65 253.8 222 64.4
Lalb_Chr12g0198401 Lupinus albus HOM05D003361 ORTHO05D003760 3.2e-65 253.4 224 68.3
Manes.14G119228 Manihot esculenta HOM05D003361 ORTHO05D003760 4.1e-65 253.1 169 71.6
Cpa.g.sc46.67 Carica papaya HOM05D003361 ORTHO05D003760 5.4e-65 252.7 222 77.9
Sc08g0006030 Simmondsia chinensis HOM05D003361 ORTHO05D003760 5.4e-65 252.7 225 75.6
Gohir.D10G079000 Gossypium hirsutum HOM05D003361 ORTHO05D003760 7.0e-65 252.3 222 75.2
Gorai.011G085800 Gossypium raimondii HOM05D003361 ORTHO05D003760 7.0e-65 252.3 222 75.2
Potri.006G061700 Populus trichocarpa HOM05D003361 ORTHO05D003760 9.2e-65 251.9 222 77.0
Sp1g14030 Schrenkiella parvula HOM05D003361 ORTHO05D003760 1.2e-64 251.5 222 73.9
C05p13880 Brassica napus HOM05D003361 ORTHO05D003760 1.6e-64 251.1 222 73.9
BolC5t30122H Brassica oleracea HOM05D003361 ORTHO05D003760 1.6e-64 251.1 222 73.9
TWI32G1011 Tripterygium wilfordii HOM05D003361 ORTHO05D003760 2.0e-64 250.8 222 74.8
Gohir.A10G072100 Gossypium hirsutum HOM05D003361 ORTHO05D003760 3.5e-64 250.0 222 74.8
Psat0s571g0080 Pisum sativum HOM05D003361 ORTHO05D003760 3.5e-64 250.0 224 75.9
BraA06t24343Z Brassica rapa HOM05D003361 ORTHO05D003760 4.5e-64 249.6 222 73.0
Manes.04G108700 Manihot esculenta HOM05D003361 ORTHO05D003760 5.9e-64 249.2 225 76.9
A06p11730 Brassica napus HOM05D003361 ORTHO05D003760 7.8e-64 248.8 222 73.0
RcHm_v2.0_Chr2g0087081 Rosa chinensis HOM05D003361 ORTHO05D003760 7.8e-64 248.8 226 76.1
CARHR016230 Cardamine hirsuta HOM05D003361 ORTHO05D003760 1.0e-63 248.4 222 74.3
Glyma.08G214500 Glycine max HOM05D003361 ORTHO05D003760 1.0e-63 248.4 226 75.2
AT1G15740 Arabidopsis thaliana HOM05D003361 ORTHO05D003760 1.3e-63 248.1 171 70.8
ATR0767G175 Amborella trichopoda HOM05D003361 ORTHO05D003760 2.9e-63 246.9 222 74.8
Glyma.13G163500 Glycine max HOM05D003361 ORTHO05D003760 2.9e-63 246.9 224 74.6
Medtr4g116170 Medicago truncatula HOM05D003361 ORTHO05D003760 2.9e-63 246.9 225 76.0
THA.LOC104812464 Tarenaya hassleriana HOM05D003361 ORTHO05D003760 5.0e-63 246.1 225 73.3
Phvul.010G157600 Phaseolus vulgaris HOM05D003361 ORTHO05D003760 1.5e-62 244.6 227 74.4
Lalb_Chr01g0012261 Lupinus albus HOM05D003361 ORTHO05D003760 1.9e-62 244.2 226 75.7
Glyma.07G028300 Glycine max HOM05D003361 ORTHO05D003760 2.5e-62 243.8 227 74.0
Glyma.17G107400 Glycine max HOM05D003361 ORTHO05D003760 3.3e-62 243.4 226 73.5
arahy.Tifrunner.gnm1.ann1.NFA80P Arachis hypogaea HOM05D003361 ORTHO05D003760 4.3e-62 243.0 302 79.1
ECA246G4877 Erigeron canadensis HOM05D003361 ORTHO05D003760 5.6e-62 242.7 226 75.2
arahy.Tifrunner.gnm1.ann1.H7Z4S8 Arachis hypogaea HOM05D003361 ORTHO05D003760 7.3e-62 242.3 226 73.0
arahy.Tifrunner.gnm1.ann1.T3C7Q8 Arachis hypogaea HOM05D003361 ORTHO05D003760 7.3e-62 242.3 226 65.0
Prupe.7G252400 Prunus persica HOM05D003361 ORTHO05D003760 7.3e-62 242.3 225 75.1
CANSAT11G0288 Cannabis sativa HOM05D003361 ORTHO05D003760 9.5e-62 241.9 224 54.5
arahy.Tifrunner.gnm1.ann1.MWAB5B Arachis hypogaea HOM05D003361 ORTHO05D003760 1.2e-61 241.5 228 73.7
arahy.Tifrunner.gnm1.ann1.JM4LQW Arachis hypogaea HOM05D003361 ORTHO05D003760 2.8e-61 240.4 225 74.7
Sed0016861 Sechium edule HOM05D003361 ORTHO05D003760 3.6e-61 240.0 222 66.2
TPR.G7990 Trifolium pratense HOM05D003361 ORTHO05D003760 3.6e-61 240.0 226 65.9
FAN28G0525 Fragaria x ananassa HOM05D003361 ORTHO05D003760 4.7e-61 239.6 225 73.8
Psat7g257800 Pisum sativum HOM05D003361 ORTHO05D003760 4.7e-61 239.6 306 75.5
THA.LOC104808198 Tarenaya hassleriana HOM05D003361 ORTHO05D003760 4.7e-61 239.6 222 71.6
Ca_12515_v3 Cicer arietinum L. HOM05D003361 ORTHO05D003760 8.0e-61 238.8 226 72.1
MD15G1162400 Malus domestica HOM05D003361 ORTHO05D003760 1.4e-60 238.0 171 69.6
VMungo0331G0010 Vigna mungo HOM05D003361 ORTHO05D003760 1.4e-60 238.0 221 74.7
Eucgr.J03087 Eucalyptus grandis HOM05D003361 ORTHO05D003760 1.8e-60 237.7 223 74.4
FvH4_1g02020 Fragaria vesca HOM05D003361 ORTHO05D003760 1.8e-60 237.7 226 73.5
HPP92_017331 Vanilla planifolia HOM05D003361 ORTHO05D003760 1.5e-59 234.6 172 68.0
Lj3g0011414 Lotus japonicus HOM05D003361 ORTHO05D003760 5.8e-59 232.6 225 72.4
Ah.09g224100 Amaranthus hybridus HOM05D003361 ORTHO05D003760 1.1e-57 228.4 225 69.3
Phvul.003G172400 Phaseolus vulgaris HOM05D003361 ORTHO05D003760 1.1e-57 228.4 224 72.3
FAN19G1251 Fragaria x ananassa HOM05D002026 ORTHO05D002291 4.1e-57 226.5 221 72.4
Os02g0613200 Oryza sativa ssp. japonica HOM05D003361 ORTHO05D003760 4.6e-56 223.0 231 67.1
Psat1g109200 Pisum sativum HOM05D003361 ORTHO05D003760 2.3e-55 220.7 224 54.0
TPR.G38632 Trifolium pratense HOM05D003361 ORTHO05D003760 3.0e-55 220.3 171 62.6
PSO017G3211 Papaver somniferum HOM05D003361 ORTHO05D003760 8.6e-55 218.8 316 73.1
Medtr4g009873 Medicago truncatula HOM05D003361 ORTHO05D003760 7.3e-54 215.7 168 62.5
CDE05G0968 Ceratophyllum demersum HOM05D003361 ORTHO05D003760 1.6e-53 214.5 224 68.8
SEGI_28212 Sequoiadendron giganteum HOM05D003361 ORTHO05D003760 4.7e-53 213.0 228 65.8
PSO170G6803 Papaver somniferum HOM05D003361 ORTHO05D003760 6.8e-52 209.1 230 68.3
Zm00001eb247040 Zea mays HOM05D003361 ORTHO05D003760 4.4e-51 206.5 232 62.9
SHI02098 Sapria himalayana HOM05D003361 ORTHO05D003760 3.7e-50 203.4 171 60.8
Cc06_g07660 Coffea canephora HOM05D003361 ORTHO05D003760 1.1e-49 201.8 229 48.0
Zm00001eb078100 Zea mays HOM05D003361 ORTHO05D003760 1.1e-49 201.8 172 59.3
CAN.G1281.4 Capsicum annuum HOM05D003361 ORTHO05D003760 1.2e-48 198.4 172 59.3
Nitab4.5_0002286g0090 Nicotiana tabacum HOM05D003361 ORTHO05D003760 2.1e-48 197.6 171 58.5
PGSC0003DMG400007912 Solanum tuberosum HOM05D003361 ORTHO05D003760 6.0e-48 196.1 172 58.7
Os04g0503500 Oryza sativa ssp. japonica HOM05D003361 ORTHO05D003760 1.0e-47 195.3 173 59.5
Sed0010441 Sechium edule HOM05D003361 ORTHO05D003760 1.3e-47 194.9 307 58.6
HanXRQChr09g0274781 Helianthus annuus HOM05D003361 ORTHO05D003760 1.7e-47 194.5 170 57.1
Solyc07g007420.3 Solanum lycopersicum HOM05D003361 ORTHO05D003760 2.3e-47 194.1 170 58.2
Sopen07g003470 Solanum pennellii HOM05D003361 ORTHO05D003760 2.3e-47 194.1 170 58.2
Solyc12g009870.2 Solanum lycopersicum HOM05D003361 ORTHO05D003760 6.6e-47 192.6 172 56.4
PGSC0003DMG400030688 Solanum tuberosum HOM05D003361 ORTHO05D003760 5.6e-46 189.5 172 57.6
Peaxi162Scf01694g00019 Petunia axillaris HOM05D003361 ORTHO05D003760 8.1e-45 185.7 170 54.7
Peaxi162Scf00088g00618 Petunia axillaris HOM05D003361 ORTHO05D003760 2.3e-44 184.1 168 56.5
unitig_699.g19089 Utricularia gibba HOM05D003361 ORTHO05D003760 4.1e-41 173.3 225 43.6
Lsat_1_v5_gn_4_88160 Lactuca sativa HOM05D003361 ORTHO05D003988 7.1e-41 172.6 119 68.1
Nitab4.5_0008536g0030 Nicotiana tabacum HOM05D003361 ORTHO05D003760 1.0e-39 168.7 172 52.9
Nitab4.5_0002329g0140 Nicotiana tabacum HOM05D003361 ORTHO05D003760 3.9e-39 166.8 172 50.6
Lj3g0027196 Lotus japonicus HOM05D003361 ORTHO05D003760 5.1e-39 166.4 190 66.3
MD17G1217000 Malus domestica HOM05D003361 ORTHO05D003760 3.3e-38 163.7 153 80.4
Pp3c4_3150 Physcomitrium patens HOM05D003361 ORTHO05D003760 4.3e-38 163.3 231 58.0
Duzib187G1093 Durio zibethinus HOM05D003361 ORTHO05D003760 1.2e-37 161.8 153 76.5
Nitab4.5_0009284g0020 Nicotiana tabacum HOM05D003361 ORTHO05D003760 3.6e-37 160.2 176 71.0
SMO200G0229 Selaginella moellendorffii HOM05D003361 ORTHO05D003760 6.8e-36 156.0 224 38.4
AagrBONN_evm.TU.Sc2ySwM_362.1382 Anthoceros agrestis HOM05D003361 ORTHO05D003760 2.0e-35 154.5 311 49.5
Glyma.13G367200 Glycine max HOM05D003361 ORTHO05D003760 7.6e-35 152.5 192 65.6
Pp3c8_1510 Physcomitrium patens HOM05D003361 ORTHO05D003760 7.6e-35 152.5 233 52.8
Mapoly0032s0095 Marchantia polymorpha HOM05D003361 ORTHO05D003760 2.2e-34 151.0 231 43.3
Duzib150G0304 Durio zibethinus HOM05D003361 ORTHO05D003760 1.1e-33 148.7 149 73.8
arahy.Tifrunner.gnm1.ann1.TB3UR8 Arachis hypogaea HOM05D003361 ORTHO05D003760 6.2e-29 132.9 216 41.7
arahy.Tifrunner.gnm1.ann1.YII6YD Arachis hypogaea HOM05D003361 ORTHO05D003760 6.2e-29 132.9 216 41.7
SGA_v2.0_scaffold11G05885 Striga asiatica HOM05D003361 ORTHO05D003760 1.4e-20 105.1 152 47.4
Psat0s520g0120 Pisum sativum HOM05D003361 ORTHO05D003760 1.1e-17 95.5 113 56.6
Oeu027837.1 Olea europaea HOM05D003361 ORTHO05D003760 4.6e-16 90.1 105 84.8
Glyma.15G006200 Glycine max HOM05D003361 ORTHO05D003760 6.0e-16 89.7 97 52.6
RcHm_v2.0_Chr1g0325881 Rosa chinensis HOM05D003361 ORTHO05D003760 9.6e-14 82.4 66 59.1
Actinidia08955 Actinidia chinensis HOM05D003361 ORTHO05D003760 1.2e-11 75.5 99 84.8
RcHm_v2.0_Chr6g0252571 Rosa chinensis HOM05D003361 ORTHO05D003760 1.2e-11 75.5 61 59.0
MD17G1216900 Malus domestica HOM05D003361 ORTHO05D003760 1.0e-10 72.4 58 62.1
SGA_v2.0_scaffold38G14981 Striga asiatica HOM05D003361 ORTHO05D003760 4.9e-10 70.1 108 42.6
CAN.G509.10 Capsicum annuum HOM05D003361 ORTHO05D003760 3.2e-09 67.4 52 63.5
MCO10G095 Micromonas commoda HOM05D003361 ORTHO05D003760 3.0e-07 60.8 94 35.1
Psat1g123960 Pisum sativum HOM05D003361 ORTHO05D003760 4.3e-06 57.0 43 65.1


User provided reference genes

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