Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR383G0062 Trochodendron aralioides HOM05D004383 ORTHO05D005050 1.6e-70 269.2 131 100.0
Dinv01903 Davidia involucrata HOM05D004383 ORTHO05D005050 1.3e-48 196.4 114 83.3
Nn1g03128 Nelumbo nucifera HOM05D004383 ORTHO05D005050 1.3e-43 179.9 100 89.0
Dinv10290 Davidia involucrata HOM05D004383 ORTHO05D005050 1.6e-41 172.9 101 87.1
TAR625G0171 Trochodendron aralioides HOM05D004383 ORTHO05D005050 3.5e-41 171.8 101 86.1
TAR625G1552 Trochodendron aralioides HOM05D004383 ORTHO05D005050 3.5e-41 171.8 101 86.1
Nn3g19885 Nelumbo nucifera HOM05D004383 ORTHO05D005050 4.6e-41 171.4 100 85.0
vmacro05117 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 7.8e-41 170.6 101 85.1
CSS0047262 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 1.0e-40 170.2 102 84.3
vmacro11269 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 1.3e-40 169.9 101 85.1
ECA238G1890 Erigeron canadensis HOM05D004383 ORTHO05D005050 2.3e-40 169.1 101 84.2
QL02p018464 Quercus lobata HOM05D004383 ORTHO05D005050 2.3e-40 169.1 102 83.3
Atru.chr7.2584 Acer truncatum HOM05D004383 ORTHO05D005050 3.0e-40 168.7 102 84.3
Lsat_1_v5_gn_8_16540 Lactuca sativa HOM05D004383 ORTHO05D005050 3.0e-40 168.7 101 83.2
Actinidia14139 Actinidia chinensis HOM05D004383 ORTHO05D005050 3.9e-40 168.3 101 82.2
Nitab4.5_0000264g0060 Nicotiana tabacum HOM05D004383 ORTHO05D005050 3.9e-40 168.3 132 67.4
Actinidia10531 Actinidia chinensis HOM05D004383 ORTHO05D005050 5.1e-40 167.9 100 83.0
CSS0025027 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 5.1e-40 167.9 101 83.2
Peaxi162Scf00045g01943 Petunia axillaris HOM05D004383 ORTHO05D005050 5.1e-40 167.9 98 83.7
CSS0026414 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 6.6e-40 167.5 101 85.1
Gohir.D06G105600 Gossypium hirsutum HOM05D004383 ORTHO05D005050 6.6e-40 167.5 102 83.3
Gorai.010G120200 Gossypium raimondii HOM05D004383 ORTHO05D005050 6.6e-40 167.5 102 83.3
Hma1.2p1_0355F.1_g133920 Hydrangea macrophylla HOM05D004383 ORTHO05D005050 6.6e-40 167.5 101 84.2
CiPaw.07G231900 Carya illinoinensis HOM05D004383 ORTHO05D005050 8.7e-40 167.2 102 81.4
Ciclev10009603m.g Citrus clementina HOM05D004383 ORTHO05D005050 8.7e-40 167.2 102 82.4
Sopen08g002600 Solanum pennellii HOM05D004383 ORTHO05D005050 8.7e-40 167.2 98 82.7
PGSC0003DMG400026285 Solanum tuberosum HOM05D004383 ORTHO05D005050 8.7e-40 167.2 98 82.7
Gorai.009G064600 Gossypium raimondii HOM05D004383 ORTHO05D005050 1.1e-39 166.8 102 81.4
Thecc.09G012700 Theobroma cacao HOM05D004383 ORTHO05D005050 1.1e-39 166.8 102 82.4
arahy.Tifrunner.gnm1.ann1.S5PPFL Arachis hypogaea HOM05D004383 ORTHO05D005050 1.5e-39 166.4 103 80.6
Eucgr.C04036 Eucalyptus grandis HOM05D004383 ORTHO05D005050 1.5e-39 166.4 102 80.4
Nitab4.5_0001362g0040 Nicotiana tabacum HOM05D004383 ORTHO05D005050 1.5e-39 166.4 133 65.4
Hund25610 Selenicereus undatus HOM05D004383 ORTHO05D005050 1.5e-39 166.4 103 80.6
CiPaw.08G004800 Carya illinoinensis HOM05D004383 ORTHO05D005050 1.9e-39 166.0 102 81.4
COL.COLO4_18979 Corchorus olitorius HOM05D002641 ORTHO05D005050 1.9e-39 166.0 103 81.6
Haze_21384 Corylus avellana HOM05D004383 ORTHO05D005050 1.9e-39 166.0 102 82.4
PGR044G2662 Punica granatum HOM05D004383 ORTHO05D005050 2.5e-39 165.6 102 81.4
arahy.Tifrunner.gnm1.ann1.W5C21C Arachis hypogaea HOM05D004383 ORTHO05D005050 3.3e-39 165.2 103 79.6
Duzib187G0841 Durio zibethinus HOM05D004383 ORTHO05D005050 4.3e-39 164.9 102 81.4
Gohir.A05G061400 Gossypium hirsutum HOM05D004383 ORTHO05D005050 4.3e-39 164.9 102 80.4
Lj7A737G42 Lonicera japonica HOM05D004383 ORTHO05D005050 4.3e-39 164.9 101 83.2
Sc23g0006160 Simmondsia chinensis HOM05D004383 ORTHO05D005050 4.3e-39 164.9 100 81.0
CAN.G285.20 Capsicum annuum HOM05D004383 ORTHO05D005050 7.3e-39 164.1 98 80.6
SalBow8G1520 Salvia bowleyana HOM05D004383 ORTHO05D005050 7.3e-39 164.1 133 67.7
Solyc08g006650.3 Solanum lycopersicum HOM05D004383 ORTHO05D005050 7.3e-39 164.1 98 81.6
Duzib168G1681 Durio zibethinus HOM05D004383 ORTHO05D005050 9.6e-39 163.7 102 80.4
GSVIVG01035992001 Vitis vinifera HOM05D004383 ORTHO05D005050 1.3e-38 163.3 101 82.2
Manes.03G007300 Manihot esculenta HOM05D004383 ORTHO05D005050 1.6e-38 162.9 102 79.4
Gohir.D05G063900 Gossypium hirsutum HOM05D004383 ORTHO05D005050 2.1e-38 162.5 102 79.4
CsaV3_4G036420 Cucumis sativus L. HOM05D004383 ORTHO05D005050 2.8e-38 162.2 102 79.4
MELO3C016948.2 Cucumis melo HOM05D004383 ORTHO05D005050 3.6e-38 161.8 102 79.4
Manes.16G131700 Manihot esculenta HOM05D004383 ORTHO05D005050 3.6e-38 161.8 102 78.4
Sabra18G0020200 Salix brachista HOM05D004383 ORTHO05D005050 3.6e-38 161.8 102 79.4
CANSAT64G0435 Cannabis sativa HOM05D004383 ORTHO05D005050 4.8e-38 161.4 102 79.4
Cpa.g.sc148.37 Carica papaya HOM05D004383 ORTHO05D005050 4.8e-38 161.4 102 79.4
DCAR_003054 Daucus carota HOM05D004383 ORTHO05D005050 4.8e-38 161.4 100 81.0
EL10Ac2g02480 Beta vulgaris HOM05D004383 ORTHO05D005050 6.2e-38 161.0 97 80.4
RcHm_v2.0_Chr6g0299241 Rosa chinensis HOM05D004383 ORTHO05D005050 6.2e-38 161.0 102 79.4
TWI32G1179 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 8.1e-38 160.6 102 80.4
Ah.12g060630 Amaranthus hybridus HOM05D004383 ORTHO05D005050 1.1e-37 160.2 102 76.5
Cc00_g24580 Coffea canephora HOM05D004383 ORTHO05D005050 1.1e-37 160.2 102 76.5
Potri.018G016800 Populus trichocarpa HOM05D004383 ORTHO05D005050 1.1e-37 160.2 102 78.4
Oeu021906.1 Olea europaea HOM05D004383 ORTHO05D005050 1.4e-37 159.8 102 77.5
Migut.E01443 Erythranthe guttata HOM05D004383 ORTHO05D005050 1.8e-37 159.5 102 79.4
FvH4_3g24420 Fragaria vesca HOM05D004383 ORTHO05D005050 1.8e-37 159.5 102 78.4
FAN16G3501 Fragaria x ananassa HOM05D004383 ORTHO05D005050 1.8e-37 159.5 102 78.4
FAN21G1236 Fragaria x ananassa HOM05D004383 ORTHO05D005050 1.8e-37 159.5 102 78.4
Potri.006G266300 Populus trichocarpa HOM05D004383 ORTHO05D005050 1.8e-37 159.5 102 77.5
AUR62024788 Chenopodium quinoa HOM05D004383 ORTHO05D005050 5.3e-37 157.9 102 75.5
Sed0012000 Sechium edule HOM05D004383 ORTHO05D005050 5.3e-37 157.9 102 77.5
AUR62032433 Chenopodium quinoa HOM05D004383 ORTHO05D005050 6.9e-37 157.5 102 75.5
ClCG05G016150 Citrullus lanatus HOM05D004383 ORTHO05D005050 6.9e-37 157.5 102 77.5
Sabra06G0208900 Salix brachista HOM05D004383 ORTHO05D005050 9.0e-37 157.1 102 76.5
Sed0009310 Sechium edule HOM05D004383 ORTHO05D005050 1.2e-36 156.8 102 77.5
MSTRG.13961 Avicennia marina HOM05D004383 ORTHO05D005050 2.6e-36 155.6 132 63.6
HanXRQChr12g0370101 Helianthus annuus HOM05D004383 ORTHO05D005050 2.6e-36 155.6 92 81.5
PSO017G0706 Papaver somniferum HOM05D004383 ORTHO05D005050 2.6e-36 155.6 133 63.2
PSO170G1218 Papaver somniferum HOM05D004383 ORTHO05D005050 2.6e-36 155.6 133 63.2
Prupe.1G396200 Prunus persica HOM05D004383 ORTHO05D005050 3.4e-36 155.2 102 75.5
TWI34G1410 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 3.4e-36 155.2 102 78.4
Aa31LG3G16320 Aethionema arabicum HOM05D004383 ORTHO05D005050 4.4e-36 154.8 102 75.5
ECA233G1452 Erigeron canadensis HOM05D004383 ORTHO05D005050 4.4e-36 154.8 92 81.5
Phvul.001G042400 Phaseolus vulgaris HOM05D004383 ORTHO05D005050 5.8e-36 154.5 103 78.6
SGA_v2.0_scaffold169G38599 Striga asiatica HOM05D004383 ORTHO05D005050 7.6e-36 154.1 133 65.4
MD15G1042900 Malus domestica HOM05D004383 ORTHO05D005050 1.7e-35 152.9 102 74.5
Lalb_Chr24g0401921 Lupinus albus HOM05D004383 ORTHO05D005050 2.9e-35 152.1 104 75.0
Rhsim07G0166500 Rhododendron simsii HOM05D004383 ORTHO05D005050 2.9e-35 152.1 123 68.3
Glyma.17G222100 Glycine max HOM05D004383 ORTHO05D005050 3.8e-35 151.8 103 76.7
SGA_v2.0_scaffold4G02162 Striga asiatica HOM05D004383 ORTHO05D005050 4.9e-35 151.4 102 75.5
HanXRQChr07g0201211 Helianthus annuus HOM05D004383 ORTHO05D005050 6.4e-35 151.0 101 77.2
TPR.G38877 Trifolium pratense HOM05D004383 ORTHO05D005050 6.4e-35 151.0 103 76.7
VMungo0647G1739 Vigna mungo HOM05D004383 ORTHO05D005050 6.4e-35 151.0 103 76.7
Medtr1g013660 Medicago truncatula HOM05D004383 ORTHO05D005050 8.4e-35 150.6 103 76.7
BcaB01g06278 Brassica carinata HOM05D004383 ORTHO05D005050 1.9e-34 149.4 102 73.5
CARHR202520 Cardamine hirsuta HOM05D004383 ORTHO05D005050 1.9e-34 149.4 102 73.5
Migut.A00383 Erythranthe guttata HOM05D004383 ORTHO05D005050 1.9e-34 149.4 102 74.5
Thhalv10014802m.g Eutrema salsugineum HOM05D004383 ORTHO05D005050 1.9e-34 149.4 102 73.5
Glyma.14G103800 Glycine max HOM05D004383 ORTHO05D005050 1.9e-34 149.4 103 75.7
Oeu010290.1 Olea europaea HOM05D004383 ORTHO05D005050 1.9e-34 149.4 102 71.6
Sp6g32680 Schrenkiella parvula HOM05D004383 ORTHO05D005050 1.9e-34 149.4 102 73.5
Carub.0006s0928 Capsella rubella HOM05D004383 ORTHO05D005050 2.4e-34 149.1 102 73.5
BcaB05g21506 Brassica carinata HOM05D004383 ORTHO05D005050 4.2e-34 148.3 102 72.5
CDE05G2494 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 4.2e-34 148.3 130 63.8
Psat6g025120 Pisum sativum HOM05D004383 ORTHO05D005050 5.4e-34 147.9 103 75.7
THA.LOC104824960 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 5.4e-34 147.9 102 73.5
BcaB01g05499 Brassica carinata HOM05D004383 ORTHO05D005050 7.1e-34 147.5 102 72.5
Ca_13075_v3 Cicer arietinum L. HOM05D004383 ORTHO05D005050 7.1e-34 147.5 103 74.8
MBI14_g31383_MAGBIO Magnolia biondii HOM05D004383 ORTHO05D005050 9.3e-34 147.1 102 77.5
AL6G21360 Arabidopsis lyrata HOM05D004383 ORTHO05D005050 1.2e-33 146.7 102 72.5
AT5G10780 Arabidopsis thaliana HOM05D004383 ORTHO05D005050 1.2e-33 146.7 102 72.5
THA.LOC104799028 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 1.2e-33 146.7 102 73.5
unitig_32.g11121 Utricularia gibba HOM05D004383 ORTHO05D005050 1.6e-33 146.4 102 74.5
CDE02G0236 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 3.5e-33 145.2 130 61.5
BolC3t13057H Brassica oleracea HOM05D004383 ORTHO05D005050 4.6e-33 144.8 102 71.6
Lj6g0009294 Lotus japonicus HOM05D004383 ORTHO05D005050 6.0e-33 144.4 104 73.1
FvH4_6g27370 Fragaria vesca HOM05D004383 ORTHO05D005050 7.9e-33 144.1 94 74.5
FAN02G2967 Fragaria x ananassa HOM05D004383 ORTHO05D005050 7.9e-33 144.1 94 74.5
FAN05G0819 Fragaria x ananassa HOM05D004383 ORTHO05D005050 7.9e-33 144.1 94 74.5
BcaC03g13332 Brassica carinata HOM05D004383 ORTHO05D005050 1.0e-32 143.7 103 71.8
A02p00660 Brassica napus HOM05D004383 ORTHO05D005050 1.0e-32 143.7 103 71.8
C02p04660 Brassica napus HOM05D004383 ORTHO05D005050 1.0e-32 143.7 103 71.8
BolC2t06425H Brassica oleracea HOM05D004383 ORTHO05D003478 1.0e-32 143.7 103 71.8
A03p04760 Brassica napus HOM05D004383 ORTHO05D005050 1.3e-32 143.3 103 71.8
BraA03t09816Z Brassica rapa HOM05D004383 ORTHO05D005050 1.3e-32 143.3 103 71.8
BraA02t05050Z Brassica rapa HOM05D004383 ORTHO05D005050 3.0e-32 142.1 103 70.9
C03p05470 Brassica napus HOM05D004383 ORTHO05D005050 3.9e-32 141.7 91 75.8
ATR0580G398 Amborella trichopoda HOM05D004383 ORTHO05D005050 5.1e-32 141.4 100 76.0
FAN14G2933 Fragaria x ananassa HOM05D004383 ORTHO05D005050 8.7e-32 140.6 94 73.4
Os03g0360500 Oryza sativa ssp. japonica HOM05D004383 ORTHO05D005050 7.4e-31 137.5 131 57.3
HPP92_021944 Vanilla planifolia HOM05D004383 ORTHO05D005050 1.3e-30 136.7 103 69.9
SEGI_36915 Sequoiadendron giganteum HOM05D004383 ORTHO05D005050 1.6e-30 136.3 100 72.0
Zm00001eb394360 Zea mays HOM05D004383 ORTHO05D005050 2.8e-30 135.6 130 57.7
MD08G1052600 Malus domestica HOM05D004383 ORTHO05D005050 2.4e-26 122.5 102 65.7
Pp3c18_15950 Physcomitrium patens HOM05D004383 ORTHO05D005050 4.2e-26 121.7 101 63.4
SMO367G0045 Selaginella moellendorffii HOM05D004383 ORTHO05D005050 2.7e-25 119.0 97 62.9
arahy.Tifrunner.gnm1.ann1.76P32W Arachis hypogaea HOM05D004383 ORTHO05D005050 6.0e-25 117.9 75 73.3
arahy.Tifrunner.gnm1.ann1.90HH72 Arachis hypogaea HOM05D004383 ORTHO05D005050 6.0e-25 117.9 75 73.3
Mapoly0039s0015 Marchantia polymorpha HOM05D004383 ORTHO05D005050 1.1e-23 113.6 91 59.3
AagrBONN_evm.TU.Sc2ySwM_368.2778 Anthoceros agrestis HOM05D004383 ORTHO05D005050 1.9e-23 112.8 98 58.2
BcaNung06638 Brassica carinata HOM05D004383 ORTHO05D005050 5.3e-21 104.8 70 71.4
CBR_g29297 Chara braunii HOM05D004383 ORTHO05D005050 6.9e-21 104.4 97 55.7
Aqoxy7G03322 Aquilegia oxysepala HOM05D004383 ORTHO05D005050 6.0e-17 91.3 60 71.7
Oeu048647.1 Olea europaea HOM05D004383 ORTHO05D005050 1.1e-15 87.0 62 67.7
CSS0012906 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 1.3e-11 73.6 43 83.7
Medtr8g027900 Medicago truncatula HOM05D000337 ORTHO05D000297 2.2e-11 72.8 40 90.0
Atru.chr7.2585 Acer truncatum HOM05D004383 ORTHO05D005050 2.9e-11 72.4 52 67.3
Atru.chr7.2578 Acer truncatum HOM05D004610 ORTHO05D001148 8.4e-11 70.9 45 75.6
Lalb_Chr10g0093521 Lupinus albus HOM05D004383 ORTHO05D005050 6.1e-09 64.7 34 91.2
DCAR_031730 Daucus carota HOM05D004383 ORTHO05D005050 5.1e-08 61.6 36 77.8


User provided reference genes

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