Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR383G0035 Trochodendron aralioides HOM05D003951 ORTHO05D005378 0.0e+00 1940.6 986 100.0
Dinv30270 Davidia involucrata HOM05D003951 ORTHO05D005378 0.0e+00 1601.3 986 80.8
Nn2g11661 Nelumbo nucifera HOM05D003951 ORTHO05D005378 0.0e+00 1601.3 984 80.8
GSVIVG01035648001 Vitis vinifera HOM05D003951 ORTHO05D005378 0.0e+00 1598.2 988 80.9
Hma1.2p1_0590F.1_g185010 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 0.0e+00 1579.3 986 79.4
Aqoxy7G01531 Aquilegia oxysepala HOM05D003951 ORTHO05D005378 0.0e+00 1569.3 988 78.2
MBI04_g14936_MAGBIO Magnolia biondii HOM05D003951 ORTHO05D005378 0.0e+00 1567.7 989 78.9
Cfa013355 Carpinus fangiana HOM05D003951 ORTHO05D005378 0.0e+00 1563.1 986 79.4
Dinv14244 Davidia involucrata HOM05D003951 ORTHO05D005378 0.0e+00 1553.5 954 80.2
Atru.chr7.2135 Acer truncatum HOM05D003951 ORTHO05D005378 0.0e+00 1551.2 984 77.4
CSS0015540 Camellia sinensis var. sinensis HOM05D003951 ORTHO05D005378 0.0e+00 1548.5 985 78.7
CiPaw.08G024600 Carya illinoinensis HOM05D003951 ORTHO05D005378 0.0e+00 1540.0 985 78.7
Prupe.1G450600 Prunus persica HOM05D003951 ORTHO05D005378 0.0e+00 1535.8 985 77.1
QL12p029450 Quercus lobata HOM05D003951 ORTHO05D005378 0.0e+00 1535.4 986 77.7
Manes.03G061800 Manihot esculenta HOM05D003951 ORTHO05D005378 0.0e+00 1533.1 986 76.8
Cpa.g.sc7.257 Carica papaya HOM05D003951 ORTHO05D005378 0.0e+00 1531.5 986 76.6
Thecc.09G042400 Theobroma cacao HOM05D003951 ORTHO05D005378 0.0e+00 1525.4 988 77.2
PSO210G7231 Papaver somniferum HOM05D003951 ORTHO05D005378 0.0e+00 1521.5 987 76.7
PSO210G0075 Papaver somniferum HOM05D003951 ORTHO05D005378 0.0e+00 1520.8 987 76.7
Gohir.D06G093700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1518.1 985 76.9
Potri.018G039800 Populus trichocarpa HOM05D003951 ORTHO05D005378 0.0e+00 1516.9 986 75.6
Duzib187G0774 Durio zibethinus HOM05D003951 ORTHO05D005378 0.0e+00 1516.5 993 76.4
Gorai.010G108200 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1513.8 983 76.7
MD08G1115900 Malus domestica HOM05D003951 ORTHO05D005378 0.0e+00 1511.1 986 75.7
Potri.006G240300 Populus trichocarpa HOM05D003951 ORTHO05D005378 0.0e+00 1506.1 986 75.4
Ciclev10007348m.g Citrus clementina HOM05D003951 ORTHO05D005378 0.0e+00 1503.4 985 75.5
CANSAT25G2930 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1501.5 987 75.0
Gohir.A06G094100 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1501.5 985 76.0
RcHm_v2.0_Chr6g0305971 Rosa chinensis HOM05D003951 ORTHO05D005378 0.0e+00 1499.2 987 75.8
Glyma.04G082000 Glycine max HOM05D003951 ORTHO05D005378 0.0e+00 1498.0 986 74.7
MD15G1095600 Malus domestica HOM05D003951 ORTHO05D005378 0.0e+00 1496.5 985 75.0
Sabra06G0187900 Salix brachista HOM05D003951 ORTHO05D005378 0.0e+00 1496.1 1009 73.6
Glyma.06G083700 Glycine max HOM05D003951 ORTHO05D005378 0.0e+00 1493.4 986 74.3
Sabra18G0039700 Salix brachista HOM05D003951 ORTHO05D005378 0.0e+00 1492.6 985 74.7
Gohir.D13G192700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1490.7 986 74.8
TWI32G0786 Tripterygium wilfordii HOM05D003951 ORTHO05D005378 0.0e+00 1489.9 986 73.6
Gorai.013G218700 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1486.5 986 74.3
Lalb_Chr08g0243161 Lupinus albus HOM05D003951 ORTHO05D005378 0.0e+00 1486.1 986 73.5
FvH4_2g35850 Fragaria vesca HOM05D003951 ORTHO05D005378 0.0e+00 1484.9 987 75.0
FAN15G0863 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1484.2 987 74.8
Gohir.A13G186000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1481.5 986 74.6
FAN27G3265 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1478.0 988 74.9
Lj1g0011830 Lotus japonicus HOM05D003951 ORTHO05D005378 0.0e+00 1478.0 986 73.4
FAN20G1017 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1476.8 987 74.7
vmacro10453 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 0.0e+00 1474.9 1006 74.8
MSTRG.19211 Avicennia marina HOM05D003951 ORTHO05D005378 0.0e+00 1474.1 986 72.6
arahy.Tifrunner.gnm1.ann1.6KB6B4 Arachis hypogaea HOM05D003951 ORTHO05D005378 0.0e+00 1471.8 984 72.7
Oeu038879.1 Olea europaea HOM05D003951 ORTHO05D005378 0.0e+00 1470.3 986 72.9
Psat5g022720 Pisum sativum HOM05D003951 ORTHO05D005378 0.0e+00 1467.6 984 73.1
Nitab4.5_0010350g0010 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1466.1 984 72.5
Lalb_Chr23g0269551 Lupinus albus HOM05D003951 ORTHO05D005378 0.0e+00 1465.7 984 73.2
arahy.Tifrunner.gnm1.ann1.ZA6ZKK Arachis hypogaea HOM05D003951 ORTHO05D005378 0.0e+00 1465.3 984 72.4
Migut.J00480 Erythranthe guttata HOM05D003951 ORTHO05D005378 0.0e+00 1465.3 984 72.4
Medtr3g110140 Medicago truncatula HOM05D003951 ORTHO05D005378 0.0e+00 1465.3 987 73.3
VMungo1309G1090 Vigna mungo HOM05D003951 ORTHO05D005378 0.0e+00 1464.9 987 73.4
Gohir.D08G272000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1463.7 984 74.5
Gorai.004G290400 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1463.0 984 74.5
Ca_15606_v3 Cicer arietinum L. HOM05D003951 ORTHO05D005378 0.0e+00 1462.6 984 72.6
TPR.G1335 Trifolium pratense HOM05D003951 ORTHO05D005378 0.0e+00 1461.8 987 72.9
Cc06_g04830 Coffea canephora HOM05D003951 ORTHO05D005378 0.0e+00 1460.3 989 72.5
Sc23g0005190 Simmondsia chinensis HOM05D003951 ORTHO05D005378 0.0e+00 1456.0 985 72.4
Gohir.A08G250500 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1451.8 984 74.0
Phvul.009G107800 Phaseolus vulgaris HOM05D003951 ORTHO05D005378 0.0e+00 1451.4 986 72.4
Eucgr.C02905 Eucalyptus grandis HOM05D003951 ORTHO05D005378 0.0e+00 1449.9 985 72.3
Hund19527 Selenicereus undatus HOM05D003951 ORTHO05D005378 0.0e+00 1448.3 986 71.9
Thhalv10012570m.g Eutrema salsugineum HOM05D003951 ORTHO05D005378 0.0e+00 1447.2 986 72.0
CANSAT56G2409 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1445.3 994 72.7
Nitab4.5_0000132g0420 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1444.5 984 71.6
Peaxi162Scf01195g00118 Petunia axillaris HOM05D003951 ORTHO05D005378 0.0e+00 1442.6 985 71.5
Sp6g32040 Schrenkiella parvula HOM05D003951 ORTHO05D005378 0.0e+00 1439.5 986 71.4
Nitab4.5_0008726g0020 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1437.6 984 71.1
PGR044G0887 Punica granatum HOM05D003951 ORTHO05D005378 0.0e+00 1436.4 985 71.9
CANSAT56G0789 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1435.6 994 72.6
EL10Ac2g04048 Beta vulgaris HOM05D003951 ORTHO05D005378 0.0e+00 1429.8 986 71.0
BcaC03g13375 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1429.5 985 70.9
BcaNung01934 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1428.7 986 70.9
Solyc09g008610.4 Solanum lycopersicum HOM05D003951 ORTHO05D005378 0.0e+00 1426.8 984 70.0
PGSC0003DMG400012982 Solanum tuberosum HOM05D003951 ORTHO05D005378 0.0e+00 1424.5 984 70.0
BcaB08g37043 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1421.4 986 70.9
Sopen09g003410 Solanum pennellii HOM05D003951 ORTHO05D005378 0.0e+00 1421.0 987 69.7
C02p05210 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1420.2 985 70.7
BolC2t06471H Brassica oleracea HOM05D003951 ORTHO05D005378 0.0e+00 1419.4 999 70.3
CARHR201660 Cardamine hirsuta HOM05D003951 ORTHO05D005378 0.0e+00 1418.7 984 70.5
SGA_v2.0_scaffold657G53382 Striga asiatica HOM05D003951 ORTHO05D005378 0.0e+00 1417.1 990 69.6
DCAR_004489 Daucus carota HOM05D003951 ORTHO05D005378 0.0e+00 1416.7 1084 66.7
THA.LOC104814774 Tarenaya hassleriana HOM05D003951 ORTHO05D005378 0.0e+00 1415.6 986 71.0
A10p26200 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1414.1 986 70.4
SalBow3G1921 Salvia bowleyana HOM05D003951 ORTHO05D005378 0.0e+00 1414.1 985 70.8
BcaC04g19214 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1411.0 987 70.3
Oeu017004.2 Olea europaea HOM05D003951 ORTHO05D005378 0.0e+00 1408.7 1081 66.0
C09p65250 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1408.3 987 70.2
ECA233G3193 Erigeron canadensis HOM05D003951 ORTHO05D005378 0.0e+00 1403.7 955 71.4
AL6G22230 Arabidopsis lyrata HOM05D003951 ORTHO05D005378 0.0e+00 1402.9 984 69.6
BraA10t44677Z Brassica rapa HOM05D003951 ORTHO05D005378 0.0e+00 1402.1 1006 69.0
AT5G11560 Arabidopsis thaliana HOM05D003951 ORTHO05D005378 0.0e+00 1401.7 984 69.7
Carub.0006s1003 Capsella rubella HOM05D003951 ORTHO05D005378 0.0e+00 1399.4 984 69.7
Sed0007642 Sechium edule HOM05D003951 ORTHO05D005378 0.0e+00 1399.0 988 69.3
MELO3C011151.2 Cucumis melo HOM05D003951 ORTHO05D005378 0.0e+00 1397.1 986 69.4
HanXRQChr08g0221151 Helianthus annuus HOM05D003951 ORTHO05D005378 0.0e+00 1394.4 989 70.4
Lsat_1_v5_gn_6_63741 Lactuca sativa HOM05D003951 ORTHO05D005378 0.0e+00 1392.1 1016 68.2
Sed0024259 Sechium edule HOM05D003951 ORTHO05D005378 0.0e+00 1390.2 988 68.7
ClCG08G012310 Citrullus lanatus HOM05D003951 ORTHO05D005378 0.0e+00 1389.4 994 69.0
BolC9t59353H Brassica oleracea HOM05D003951 ORTHO05D005378 0.0e+00 1388.6 1013 68.3
CsaV3_2G030980 Cucumis sativus L. HOM05D003951 ORTHO05D005378 0.0e+00 1385.5 986 68.8
CAN.G1759.1 Capsicum annuum HOM05D003951 ORTHO05D005378 0.0e+00 1383.2 953 70.5
ATR0315G102 Amborella trichopoda HOM05D003951 ORTHO05D005378 0.0e+00 1382.1 987 68.9
COL.COLO4_18674 Corchorus olitorius HOM05D003951 ORTHO05D005378 0.0e+00 1370.5 900 75.7
AUR62041721 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1362.8 986 67.7
AUR62043518 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1361.7 986 67.7
BraA02t05087Z Brassica rapa HOM05D003951 ORTHO05D005378 0.0e+00 1353.6 1001 67.2
CDE09G1231 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 0.0e+00 1335.9 983 66.6
Lj8A588G18 Lonicera japonica HOM05D003951 ORTHO05D005378 0.0e+00 1333.5 968 69.1
AUR62009306 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1315.8 986 65.7
A02p01070 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1298.5 986 65.8
Aa31LG3G15640 Aethionema arabicum HOM05D003951 ORTHO05D005378 0.0e+00 1297.3 984 66.2
Os05g0230600 Oryza sativa ssp. japonica HOM05D003951 ORTHO05D005378 0.0e+00 1295.4 984 64.6
Nitab4.5_0004281g0080 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1292.3 897 70.2
Ah.16g105420 Amaranthus hybridus HOM05D003951 ORTHO05D005378 0.0e+00 1273.1 1015 64.3
Zm00001eb350390 Zea mays HOM05D003951 ORTHO05D005378 0.0e+00 1263.1 977 62.4
Medtr3g110090 Medicago truncatula HOM05D003951 ORTHO05D005378 0.0e+00 1255.7 848 72.2
Zm00001eb284300 Zea mays HOM05D003951 ORTHO05D005378 0.0e+00 1247.6 977 62.3
Ah.10g035090 Amaranthus hybridus HOM05D003951 ORTHO05D005378 0.0e+00 1196.0 847 68.5
SGA_v2.0_scaffold40G15445 Striga asiatica HOM05D003951 ORTHO05D005378 0.0e+00 1190.6 881 66.4
CDE02G1137 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 0.0e+00 1152.1 953 61.3
SHI18663 Sapria himalayana HOM05D003951 ORTHO05D005378 0.0e+00 1092.4 809 66.6
Mapoly0001s0045 Marchantia polymorpha HOM05D003951 ORTHO05D005378 4.3e-301 1038.1 979 55.1
Haze_16526 Corylus avellana HOM05D003951 ORTHO05D005378 4.5e-290 1001.5 659 75.0
Pp3c24_6940 Physcomitrium patens HOM05D003951 ORTHO05D005378 6.5e-289 997.7 996 51.6
Ah.16g105540 Amaranthus hybridus HOM05D003951 ORTHO05D005378 1.1e-264 917.1 690 64.6
Actinidia14667 Actinidia chinensis HOM05D003951 ORTHO05D005378 1.7e-260 903.3 541 82.6
SMO361G0709 Selaginella moellendorffii HOM05D003951 ORTHO05D005378 1.7e-252 876.7 955 48.7
Lj7A704G78 Lonicera japonica HOM05D003951 ORTHO05D005378 8.0e-247 857.8 658 65.0
AagrBONN_evm.TU.Sc2ySwM_228.1359 Anthoceros agrestis HOM05D003951 ORTHO05D005378 2.4e-214 750.0 881 44.5
Ah.16g105530 Amaranthus hybridus HOM05D003951 ORTHO05D005378 1.7e-212 743.8 530 70.6
Actinidia15735 Actinidia chinensis HOM05D003951 ORTHO05D005378 2.7e-202 709.9 809 50.7
TAR626G1339 Trochodendron aralioides HOM05D003951 ORTHO05D005378 1.9e-192 677.2 362 93.4
HPP92_003925 Vanilla planifolia HOM05D003951 ORTHO05D005378 8.5e-172 608.6 916 41.6
Actinidia14668 Actinidia chinensis HOM05D003951 ORTHO05D005378 2.7e-170 603.6 420 71.2
TAR626G1232 Trochodendron aralioides HOM05D003951 ORTHO05D005378 3.8e-156 556.6 334 84.1
Haze_16527 Corylus avellana HOM05D003951 ORTHO05D005378 6.3e-143 512.7 296 87.5
Lj7C704T11 Lonicera japonica HOM05D003951 ORTHO05D005378 7.7e-141 505.8 296 85.5
Gohir.A08G250566 Gossypium hirsutum HOM05D003951 ORTHO05D005378 1.5e-131 474.9 282 83.7
CBR_g46228 Chara braunii HOM05D000019 ORTHO05D000048 9.5e-131 472.2 847 35.5
TAR626G0188 Trochodendron aralioides HOM05D003951 ORTHO05D005378 7.0e-126 456.1 256 89.5
vmacro07087 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 4.3e-115 420.2 664 44.0
PRCOL_00001466 Prasinoderma coloniale HOM05D003951 ORTHO05D005378 1.2e-114 418.7 1056 30.4
Cre01.g042550 Chlamydomonas reinhardtii HOM05D003951 ORTHO05D005378 4.0e-105 387.1 1019 30.4
Hma1.2p1_1163F.1_g262790 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 2.7e-101 374.4 319 60.2
unitig_22.g5110 Utricularia gibba HOM05D003951 ORTHO05D020105 3.8e-95 354.0 380 48.2
Actinidia13321 Actinidia chinensis HOM05D003951 ORTHO05D005378 7.8e-93 346.3 257 66.5
Psat2g043440 Pisum sativum HOM05D003951 ORTHO05D005378 6.7e-84 316.6 363 48.5
MCO05G363 Micromonas commoda HOM05D003951 ORTHO05D005378 8.7e-84 316.2 428 41.1
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 2.5e-70 271.6 251 57.0
Nn3g18131 Nelumbo nucifera HOM05D003951 ORTHO05D005378 8.2e-58 229.9 147 82.3
BcaB01g05473 Brassica carinata HOM05D003951 ORTHO05D005378 1.9e-54 218.8 129 82.9
CBR_g46226 Chara braunii HOM05D003951 ORTHO05D005378 7.2e-54 216.9 185 57.8
C03p05840 Brassica napus HOM05D003951 ORTHO05D005378 2.1e-53 215.3 125 84.8
Actinidia31233 Actinidia chinensis HOM05D006865 ORTHO05D009005 3.3e-51 208.0 140 72.9
BolC3t13096H Brassica oleracea HOM05D003951 ORTHO05D005378 2.0e-48 198.7 125 80.8
DCAR_004486 Daucus carota HOM05D003951 ORTHO05D035008 1.6e-45 189.1 105 86.7
BolC3t13097H Brassica oleracea HOM05D003951 ORTHO05D020105 2.6e-40 171.8 103 76.7
BcaB01g05472 Brassica carinata HOM05D003951 ORTHO05D020105 5.9e-40 170.6 103 76.7
C03p05850 Brassica napus HOM05D003951 ORTHO05D020105 5.9e-40 170.6 103 76.7
Peaxi162Scf00110g00822 Petunia axillaris HOM05D003951 ORTHO05D005378 6.5e-39 167.2 200 51.5
Cfa023291 Carpinus fangiana HOM05D003951 ORTHO05D005378 1.0e-31 143.3 336 30.1
Hma1.2p1_1163F.1_g262780 Hydrangea macrophylla HOM05D003951 ORTHO05D033496 1.1e-30 139.8 85 83.5
TAR629G0021 Trochodendron aralioides HOM05D003951 ORTHO05D000285 1.1e-30 139.8 193 46.1
CiPaw.07G205600 Carya illinoinensis HOM05D003951 ORTHO05D005378 6.3e-26 124.0 82 68.3
A03p05100 Brassica napus HOM05D003951 ORTHO05D033496 2.1e-21 109.0 121 56.2
BraA03t09844Z Brassica rapa HOM05D003951 ORTHO05D033496 2.1e-21 109.0 121 56.2
Peaxi162Scf00110g00823 Petunia axillaris HOM05D003951 ORTHO05D305850 6.1e-21 107.5 182 36.3
Nn3g18130 Nelumbo nucifera HOM05D003951 ORTHO05D020105 5.7e-19 100.9 72 72.2
Dinv34398 Davidia involucrata HOM05D003951 ORTHO05D005378 7.5e-19 100.5 63 79.4
CiPaw.07G205500 Carya illinoinensis HOM05D003951 ORTHO05D020105 1.3e-18 99.8 70 71.4
EL10Ac6g13930 Beta vulgaris HOM05D001881 ORTHO05D001856 3.7e-18 98.2 62 74.2
Peaxi162Scf00110g00821 Petunia axillaris HOM05D003951 ORTHO05D035008 1.1e-17 96.7 82 58.5
Ah.04g155890 Amaranthus hybridus HOM05D003518 ORTHO05D031015 1.6e-16 92.8 60 78.3
CAN.G541.23 Capsicum annuum HOM05D004796 ORTHO05D006527 7.8e-16 90.5 53 77.4
Ah.05g173020 Amaranthus hybridus HOM05D003951 ORTHO05D031015 1.5e-14 86.3 60 73.3
Ah.05g172920 Amaranthus hybridus HOM05D003951 ORTHO05D031015 3.3e-14 85.1 60 73.3
SHI18664 Sapria himalayana HOM05D003951 ORTHO05D020105 4.3e-14 84.7 136 40.4
Psat6g121680 Pisum sativum HOM05D000840 ORTHO05D000670 5.2e-12 77.8 54 66.7
Psat1g107320 Pisum sativum HOM05D001108 ORTHO05D001619 1.0e-07 63.5 115 32.2
Psat0s4854g0040 Pisum sativum HOM05D001108 ORTHO05D001619 1.3e-07 63.2 121 31.4
Ah.04g157730 Amaranthus hybridus HOM05D031501 ORTHO05D060762 8.6e-07 60.5 37 78.4


User provided reference genes

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