Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G1674 Trochodendron aralioides HOM05D003952 ORTHO05D005083 7.9e-202 706.8 340 100.0
GSVIVG01001406001 Vitis vinifera HOM05D003952 ORTHO05D005083 2.7e-157 558.9 307 88.3
Cfa018280 Carpinus fangiana HOM05D003952 ORTHO05D005083 5.9e-157 557.8 307 86.3
Haze_17805 Corylus avellana HOM05D003952 ORTHO05D005083 6.5e-156 554.3 307 86.0
TAR628G1191 Trochodendron aralioides HOM05D003952 ORTHO05D005083 1.2e-154 550.1 307 86.0
CiPaw.15G012400 Carya illinoinensis HOM05D003952 ORTHO05D005083 1.4e-153 546.6 307 85.3
QL02p037499 Quercus lobata HOM05D003952 ORTHO05D005083 1.8e-153 546.2 307 86.0
QL02p038017 Quercus lobata HOM05D003952 ORTHO05D005083 1.8e-153 546.2 307 86.0
Dinv25899 Davidia involucrata HOM05D003952 ORTHO05D005083 3.4e-152 542.0 307 85.0
DCAR_001164 Daucus carota HOM05D003952 ORTHO05D005083 4.4e-152 541.6 307 84.4
Nn008s41421 Nelumbo nucifera HOM05D003952 ORTHO05D005083 5.7e-152 541.2 308 84.7
Prupe.8G040600 Prunus persica HOM05D003952 ORTHO05D005083 2.8e-151 538.9 307 85.3
Lj7A383T43 Lonicera japonica HOM05D003952 ORTHO05D005083 1.4e-150 536.6 308 84.7
Potri.005G196700 Populus trichocarpa HOM05D003952 ORTHO05D005083 2.4e-150 535.8 306 84.3
Aqoxy6G00415 Aquilegia oxysepala HOM05D003952 ORTHO05D005083 7.0e-150 534.3 308 85.1
FvH4_2g13030 Fragaria vesca HOM05D003952 ORTHO05D005083 1.6e-149 533.1 307 85.0
Cc10_g15270 Coffea canephora HOM05D003952 ORTHO05D005083 3.5e-149 531.9 307 83.7
CAN.G495.15 Capsicum annuum HOM05D003952 ORTHO05D005083 4.5e-149 531.6 307 83.4
CSS0032669 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 7.7e-149 530.8 307 83.7
MD10G1034200 Malus domestica HOM05D003952 ORTHO05D005083 7.7e-149 530.8 307 84.0
RcHm_v2.0_Chr6g0274251 Rosa chinensis HOM05D003952 ORTHO05D005083 7.7e-149 530.8 307 84.0
Thecc.08G159400 Theobroma cacao HOM05D003952 ORTHO05D005083 1.0e-148 530.4 308 84.1
PSO170G5657 Papaver somniferum HOM05D003952 ORTHO05D005083 1.3e-148 530.0 308 81.5
Sopen04g027970 Solanum pennellii HOM05D003952 ORTHO05D005083 1.7e-148 529.6 307 83.4
Atru.chr13.2009 Acer truncatum HOM05D003952 ORTHO05D005083 2.3e-148 529.3 307 84.0
CiPaw.16G008300 Carya illinoinensis HOM05D003952 ORTHO05D005083 2.3e-148 529.3 307 83.4
Solyc04g071990.3 Solanum lycopersicum HOM05D003952 ORTHO05D005083 1.1e-147 526.9 307 83.1
Nitab4.5_0000872g0040 Nicotiana tabacum HOM05D003952 ORTHO05D005083 4.2e-147 525.0 305 83.3
Nitab4.5_0000099g0200 Nicotiana tabacum HOM05D003952 ORTHO05D005083 9.5e-147 523.9 311 83.0
vmacro01493 Vaccinium macrocarpon HOM05D003952 ORTHO05D005083 9.5e-147 523.9 313 82.4
TWI60G0338 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 1.2e-146 523.5 307 82.1
Gohir.A05G246500 Gossypium hirsutum HOM05D003952 ORTHO05D005083 1.6e-146 523.1 308 83.8
Gohir.D05G248000 Gossypium hirsutum HOM05D003952 ORTHO05D005083 1.6e-146 523.1 308 83.8
Gorai.009G258800 Gossypium raimondii HOM05D003952 ORTHO05D005083 2.1e-146 522.7 308 83.8
Peaxi162Scf00360g00418 Petunia axillaris HOM05D003952 ORTHO05D005083 4.7e-146 521.5 307 82.1
Gohir.A02G062600 Gossypium hirsutum HOM05D003952 ORTHO05D005083 8.0e-146 520.8 308 83.1
Potri.002G064400 Populus trichocarpa HOM05D003952 ORTHO05D005083 1.0e-145 520.4 306 83.0
Duzib116G0427 Durio zibethinus HOM05D003952 ORTHO05D005083 1.4e-145 520.0 308 83.1
MBI04_g08946_MAGBIO Magnolia biondii HOM05D003952 ORTHO05D005083 2.3e-145 519.2 308 81.8
Duzib093G1052 Durio zibethinus HOM05D003952 ORTHO05D005083 3.0e-145 518.8 308 83.1
MD05G1033400 Malus domestica HOM05D003952 ORTHO05D005083 4.0e-145 518.5 307 82.1
MSTRG.24931 Avicennia marina HOM05D003952 ORTHO05D005083 5.2e-145 518.1 307 82.1
Eucgr.F02686 Eucalyptus grandis HOM05D003952 ORTHO05D005083 6.8e-145 517.7 305 81.3
Gohir.D02G068200 Gossypium hirsutum HOM05D003952 ORTHO05D005083 8.9e-145 517.3 308 82.5
Gorai.005G077100 Gossypium raimondii HOM05D003952 ORTHO05D005083 8.9e-145 517.3 308 82.5
Oeu051283.1 Olea europaea HOM05D003952 ORTHO05D005083 1.2e-144 516.9 307 80.8
TWI34G1640 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 1.2e-144 516.9 307 82.1
TWI32G0799 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 2.0e-144 516.2 307 81.8
Nn5g28824 Nelumbo nucifera HOM05D003952 ORTHO05D005083 2.6e-144 515.8 308 81.8
Rhsim11G0087700 Rhododendron simsii HOM05D003952 ORTHO05D005083 3.4e-144 515.4 323 79.3
FAN27G2428 Fragaria x ananassa HOM05D003952 ORTHO05D005083 5.7e-144 514.6 345 75.9
Nitab4.5_0004270g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 7.5e-144 514.2 306 81.4
SalBow7G2315 Salvia bowleyana HOM05D003952 ORTHO05D005083 7.5e-144 514.2 307 81.1
FAN15G1441 Fragaria x ananassa HOM05D003952 ORTHO05D005083 2.2e-143 512.7 341 76.2
FAN24G3461 Fragaria x ananassa HOM05D003952 ORTHO05D005083 1.1e-142 510.4 345 75.4
HanXRQChr11g0320211 Helianthus annuus HOM05D003952 ORTHO05D005083 1.4e-142 510.0 309 79.9
Sopen12g029310 Solanum pennellii HOM05D003952 ORTHO05D005083 1.4e-142 510.0 307 80.8
CAN.G26.47 Capsicum annuum HOM05D003952 ORTHO05D005083 2.4e-142 509.2 307 81.4
FAN20G1325 Fragaria x ananassa HOM05D003952 ORTHO05D005083 3.2e-142 508.8 345 75.4
Lsat_1_v5_gn_6_101520 Lactuca sativa HOM05D003952 ORTHO05D005083 5.4e-142 508.1 309 79.3
Lsat_1_v5_gn_9_42181 Lactuca sativa HOM05D003952 ORTHO05D005083 5.4e-142 508.1 313 78.6
CSS0017406 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 9.2e-142 507.3 307 81.1
Migut.C00380 Erythranthe guttata HOM05D003952 ORTHO05D005083 2.0e-141 506.1 308 80.5
Solyc12g056650.2 Solanum lycopersicum HOM05D003952 ORTHO05D005083 3.5e-141 505.4 307 80.5
Ca_10663_v3 Cicer arietinum L. HOM05D003952 ORTHO05D005083 4.5e-141 505.0 307 79.8
ECA246G0004 Erigeron canadensis HOM05D003952 ORTHO05D005083 1.0e-140 503.8 317 77.3
TPR.G17028 Trifolium pratense HOM05D003952 ORTHO05D005083 1.0e-140 503.8 307 79.8
Medtr1g098160 Medicago truncatula HOM05D003952 ORTHO05D005083 2.9e-140 502.3 307 79.8
VMungo0464G1293 Vigna mungo HOM05D003952 ORTHO05D005083 2.9e-140 502.3 307 79.2
Migut.N02951 Erythranthe guttata HOM05D003952 ORTHO05D005083 3.9e-140 501.9 307 78.8
Lalb_Chr06g0161721 Lupinus albus HOM05D003952 ORTHO05D005083 3.9e-140 501.9 305 80.7
Phvul.007G083500 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 5.0e-140 501.5 307 79.5
Oeu002069.1 Olea europaea HOM05D003952 ORTHO05D005083 6.6e-140 501.1 343 73.5
Psat6g190640 Pisum sativum HOM05D003952 ORTHO05D005083 3.3e-139 498.8 307 80.1
Phvul.004G088300 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 9.5e-139 497.3 307 78.8
ClCG08G007370 Citrullus lanatus HOM05D003952 ORTHO05D005083 1.2e-138 496.9 307 78.8
Glyma.10G221500 Glycine max HOM05D003952 ORTHO05D005083 1.2e-138 496.9 307 78.5
THA.LOC104810466 Tarenaya hassleriana HOM05D003952 ORTHO05D005083 1.2e-138 496.9 307 77.9
MSTRG.22108 Avicennia marina HOM05D003952 ORTHO05D005083 2.1e-138 496.1 307 78.8
Lalb_Chr02g0141571 Lupinus albus HOM05D003952 ORTHO05D005083 2.1e-138 496.1 306 80.1
arahy.Tifrunner.gnm1.ann1.2T81X8 Arachis hypogaea HOM05D003952 ORTHO05D005083 3.6e-138 495.4 330 74.8
arahy.Tifrunner.gnm1.ann1.5NL3D9 Arachis hypogaea HOM05D003952 ORTHO05D005083 3.6e-138 495.4 330 74.8
Glyma.16G163200 Glycine max HOM05D003952 ORTHO05D005083 4.7e-138 495.0 306 78.4
PGR042G0685 Punica granatum HOM05D003952 ORTHO05D005083 8.0e-138 494.2 307 79.2
CANSAT25G0323 Cannabis sativa HOM05D003952 ORTHO05D005083 1.0e-137 493.8 306 79.7
CDE04G1363 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 1.8e-137 493.0 308 78.9
Lj5g0005273 Lotus japonicus HOM05D003952 ORTHO05D005083 2.3e-137 492.7 307 78.8
VMungo0720G2354 Vigna mungo HOM05D003952 ORTHO05D005083 2.3e-137 492.7 307 78.8
arahy.Tifrunner.gnm1.ann1.AF3FG0 Arachis hypogaea HOM05D003952 ORTHO05D005083 3.1e-137 492.3 308 79.5
arahy.Tifrunner.gnm1.ann1.SZWP5S Arachis hypogaea HOM05D003952 ORTHO05D005083 3.1e-137 492.3 308 79.5
CARHR023130 Cardamine hirsuta HOM05D003952 ORTHO05D005083 5.2e-137 491.5 307 78.5
CsaV3_7G024490 Cucumis sativus L. HOM05D003952 ORTHO05D005083 8.9e-137 490.7 307 77.5
AL1G36320 Arabidopsis lyrata HOM05D003952 ORTHO05D005083 2.6e-136 489.2 307 78.5
Sc20g0003770 Simmondsia chinensis HOM05D003952 ORTHO05D005083 4.4e-136 488.4 307 77.2
AT1G22770 Arabidopsis thaliana HOM05D003952 ORTHO05D005083 5.8e-136 488.0 306 77.5
CsaV3_6G005020 Cucumis sativus L. HOM05D003952 ORTHO05D005083 9.8e-136 487.3 307 77.9
Thhalv10006603m.g Eutrema salsugineum HOM05D003952 ORTHO05D005083 9.8e-136 487.3 307 75.9
Sed0019934 Sechium edule HOM05D003952 ORTHO05D005083 9.8e-136 487.3 307 77.5
Sabra02G0051500 Salix brachista HOM05D003952 ORTHO05D005083 1.3e-135 486.9 364 68.4
MELO3C024067.2 Cucumis melo HOM05D003952 ORTHO05D005083 2.9e-135 485.7 307 77.2
Aa31LG7G6730 Aethionema arabicum HOM05D003952 ORTHO05D005083 8.3e-135 484.2 307 77.2
Carub.0001s2228 Capsella rubella HOM05D003952 ORTHO05D005083 1.1e-134 483.8 306 76.8
Sp1g20280 Schrenkiella parvula HOM05D003952 ORTHO05D005083 1.9e-134 483.0 307 76.5
unitig_747.g21544 Utricularia gibba HOM05D003952 ORTHO05D005083 2.4e-134 482.6 307 75.9
Sabra05G0149800 Salix brachista HOM05D003952 ORTHO05D005083 7.0e-134 481.1 279 84.6
MELO3C030034.2 Cucumis melo HOM05D003952 ORTHO05D005083 9.2e-134 480.7 307 76.9
SGA_v2.0_scaffold133G34641 Striga asiatica HOM05D003952 ORTHO05D005083 9.2e-134 480.7 307 77.5
HPP92_008674 Vanilla planifolia HOM05D003952 ORTHO05D005083 9.2e-134 480.7 308 75.0
Sed0012813 Sechium edule HOM05D003952 ORTHO05D005083 3.5e-133 478.8 307 77.5
Os01g0182600 Oryza sativa ssp. japonica HOM05D003952 ORTHO05D005083 1.0e-132 477.2 310 76.8
BcaNung06971 Brassica carinata HOM05D003952 ORTHO05D005083 1.3e-132 476.9 305 76.1
HPP92_008686 Vanilla planifolia HOM05D003952 ORTHO05D005083 6.6e-132 474.6 308 74.4
AUR62034894 Chenopodium quinoa HOM05D003952 ORTHO05D005083 1.5e-131 473.4 358 67.9
Zm00001eb337600 Zea mays HOM05D003952 ORTHO05D005083 3.3e-131 472.2 310 75.2
A09p41970 Brassica napus HOM05D003952 ORTHO05D005083 4.3e-131 471.9 305 75.7
C05p21880 Brassica napus HOM05D003952 ORTHO05D005083 4.3e-131 471.9 305 75.7
BolC5t30883H Brassica oleracea HOM05D003952 ORTHO05D005083 4.3e-131 471.9 305 75.7
BraA09t39685Z Brassica rapa HOM05D003952 ORTHO05D005083 4.3e-131 471.9 305 75.7
EL10Ac1g01605 Beta vulgaris HOM05D003952 ORTHO05D005083 5.6e-131 471.5 359 67.4
Sed0012183 Sechium edule HOM05D003952 ORTHO05D005083 9.5e-131 470.7 307 74.9
Zm00001eb122110 Zea mays HOM05D003952 ORTHO05D005083 3.6e-130 468.8 310 75.2
Lalb_Chr01g0009771 Lupinus albus HOM05D003952 ORTHO05D005083 4.7e-130 468.4 304 74.7
Peaxi162Scf00160g01744 Petunia axillaris HOM05D003952 ORTHO05D005083 6.2e-130 468.0 278 82.0
Glyma.20G170000 Glycine max HOM05D003952 ORTHO05D005083 3.4e-128 462.2 307 74.3
unitig_32.g11167 Utricularia gibba HOM05D003952 ORTHO05D005083 3.4e-128 462.2 307 72.6
Nitab4.5_0005673g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 5.8e-128 461.5 307 74.6
ATR1120G094 Amborella trichopoda HOM05D003952 ORTHO05D005083 6.2e-122 441.4 280 77.5
ClCG09G010210 Citrullus lanatus HOM05D003952 ORTHO05D005083 1.5e-120 436.8 287 75.6
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 1.1e-118 430.6 282 76.2
Ciclev10004044m.g Citrus clementina HOM05D003952 ORTHO05D005083 1.1e-110 404.1 234 83.8
SMO367G0140 Selaginella moellendorffii HOM05D003952 ORTHO05D005083 7.8e-109 397.9 308 63.3
Actinidia29549 Actinidia chinensis HOM05D003952 ORTHO05D005083 1.1e-105 387.5 239 79.1
AUR62026637 Chenopodium quinoa HOM05D003952 ORTHO05D005083 2.1e-101 373.2 236 78.0
Cpa.g.sc26.81 Carica papaya HOM05D003952 ORTHO05D005083 6.6e-100 368.2 229 77.3
SalBow6G3936 Salvia bowleyana HOM05D003952 ORTHO05D005083 2.5e-99 366.3 336 59.8
Mapoly0019s0145 Marchantia polymorpha HOM05D003952 ORTHO05D005083 2.1e-98 363.2 305 59.3
CSS0023419 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 1.3e-95 354.0 310 63.2
Manes.18G095000 Manihot esculenta HOM05D003952 ORTHO05D005083 3.2e-94 349.4 307 60.3
Lj4A703G54 Lonicera japonica HOM05D003952 ORTHO05D005083 8.7e-92 341.3 198 84.8
COL.COLO4_13782 Corchorus olitorius HOM05D003952 ORTHO05D005083 8.7e-84 314.7 182 85.2
Ah.05g168180 Amaranthus hybridus HOM05D003952 ORTHO05D005083 2.5e-83 313.2 307 56.0
Actinidia04747 Actinidia chinensis HOM05D003952 ORTHO05D005083 2.6e-51 206.8 307 42.7
COL.COLO4_13783 Corchorus olitorius HOM05D003952 ORTHO05D005083 8.5e-39 165.2 110 77.3
Lsat_1_v5_gn_5_129380 Lactuca sativa HOM05D003952 ORTHO05D015589 3.0e-36 156.8 126 64.3
Lj4C703T11 Lonicera japonica HOM05D003952 ORTHO05D005083 3.5e-24 116.7 64 89.1
Lsat_1_v5_gn_3_78320 Lactuca sativa HOM05D003952 ORTHO05D005083 9.5e-22 108.6 78 69.2
Duzib041G0651 Durio zibethinus HOM05D003952 ORTHO05D005083 1.2e-21 108.2 64 85.9
CBR_g22347 Chara braunii HOM05D003952 ORTHO05D005083 1.6e-21 107.8 153 41.2
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 4.7e-21 106.3 78 67.9
CANSAT25G0696 Cannabis sativa HOM05D003952 ORTHO05D005083 6.2e-21 105.9 64 82.8
Lsat_1_v5_gn_3_73081 Lactuca sativa HOM05D003952 ORTHO05D015589 1.7e-18 97.8 51 80.4
Lsat_1_v5_gn_7_62680 Lactuca sativa HOM05D003952 ORTHO05D015589 2.2e-18 97.4 108 49.1
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 1.9e-17 94.4 71 64.8
TPR.G25241 Trifolium pratense HOM05D003952 ORTHO05D048898 1.2e-16 91.7 59 74.6
Cc04_g15210 Coffea canephora HOM05D003952 ORTHO05D154321 3.3e-06 57.0 25 88.0


User provided reference genes

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