Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G1665 Trochodendron aralioides HOM05D007321 ORTHO05D009244 3.1e-190 668.3 343 100.0
Nn1g05198 Nelumbo nucifera HOM05D007321 ORTHO05D009244 4.3e-139 498.4 300 84.3
Aqoxy6G00494 Aquilegia oxysepala HOM05D007321 ORTHO05D009244 9.6e-131 470.7 327 74.0
Dinv19324 Davidia involucrata HOM05D007321 ORTHO05D009244 3.2e-126 455.7 335 70.7
GSVIVG01029706001 Vitis vinifera HOM05D007321 ORTHO05D009244 1.3e-124 450.3 327 70.9
PSO541G5651 Papaver somniferum HOM05D007321 ORTHO05D009244 3.0e-124 449.1 337 67.7
Actinidia28071 Actinidia chinensis HOM05D007321 ORTHO05D009244 9.6e-123 444.1 334 69.5
PSO675G7953 Papaver somniferum HOM05D007321 ORTHO05D009244 2.8e-122 442.6 339 67.3
Manes.16G135300 Manihot esculenta HOM05D007321 ORTHO05D009244 1.8e-121 439.9 343 67.1
CiPaw.05G039000 Carya illinoinensis HOM05D007321 ORTHO05D009244 5.3e-121 438.3 328 69.8
Medtr4g094295 Medicago truncatula HOM05D007321 ORTHO05D009244 6.9e-121 438.0 330 70.0
Atru.chr6.902 Acer truncatum HOM05D007321 ORTHO05D009244 2.0e-120 436.4 326 69.9
RcHm_v2.0_Chr5g0072531 Rosa chinensis HOM05D007321 ORTHO05D009244 3.4e-120 435.6 331 69.8
Glyma.05G120300 Glycine max HOM05D007321 ORTHO05D009244 5.8e-120 434.9 331 69.2
MD03G1054600 Malus domestica HOM05D007321 ORTHO05D009244 5.8e-120 434.9 309 71.5
MBI05_g36588_MAGBIO Magnolia biondii HOM05D007321 ORTHO05D009244 1.7e-119 433.3 326 70.9
Potri.001G344800 Populus trichocarpa HOM05D007321 ORTHO05D009244 1.7e-119 433.3 322 70.8
Eucgr.I02693 Eucalyptus grandis HOM05D007321 ORTHO05D009244 3.8e-119 432.2 333 68.8
Sabra16G0223900 Salix brachista HOM05D007321 ORTHO05D009244 8.4e-119 431.0 322 68.6
Lj4g0025169 Lotus japonicus HOM05D007321 ORTHO05D009244 1.4e-118 430.3 330 68.8
TWI59G1034 Tripterygium wilfordii HOM05D007321 ORTHO05D009244 1.9e-118 429.9 333 67.6
FAN11G3563 Fragaria x ananassa HOM05D007321 ORTHO05D009244 5.5e-118 428.3 296 73.3
FAN16G2899 Fragaria x ananassa HOM05D007321 ORTHO05D009244 5.5e-118 428.3 296 73.3
FAN25G3421 Fragaria x ananassa HOM05D007321 ORTHO05D009244 5.5e-118 428.3 329 68.4
FvH4_3g40270 Fragaria vesca HOM05D007321 ORTHO05D009244 7.1e-118 427.9 329 68.1
Ca_18334_v3 Cicer arietinum L. HOM05D005078 ORTHO05D007574 4.6e-117 425.2 330 67.6
Psat1g188000 Pisum sativum HOM05D007321 ORTHO05D009244 6.0e-117 424.9 330 68.2
VMungo0251G3312 Vigna mungo HOM05D007321 ORTHO05D009244 7.9e-117 424.5 325 70.2
FAN21G2259 Fragaria x ananassa HOM05D007321 ORTHO05D009244 1.0e-116 424.1 332 67.5
Phvul.002G206500 Phaseolus vulgaris HOM05D007321 ORTHO05D009244 1.0e-116 424.1 325 69.2
Lj5P243T60 Lonicera japonica HOM05D007321 ORTHO05D009244 6.7e-116 421.4 301 70.8
Ciclev10004047m.g Citrus clementina HOM05D007321 ORTHO05D009244 1.5e-115 420.2 298 72.5
Rhsim05G0110900 Rhododendron simsii HOM05D007321 ORTHO05D009244 1.9e-115 419.9 339 67.3
Thecc.02G143600 Theobroma cacao HOM05D007321 ORTHO05D009244 2.5e-115 419.5 331 67.7
PGR142G0984 Punica granatum HOM05D007321 ORTHO05D009244 5.6e-115 418.3 316 67.7
Nitab4.5_0007385g0020 Nicotiana tabacum HOM05D007321 ORTHO05D009244 9.6e-115 417.5 335 65.4
Lsat_1_v5_gn_7_80180 Lactuca sativa HOM05D007321 ORTHO05D009244 1.3e-114 417.2 300 70.7
QL11p019400 Quercus lobata HOM05D007321 ORTHO05D009244 1.6e-114 416.8 305 70.5
Migut.B00640 Erythranthe guttata HOM05D007321 ORTHO05D009244 8.2e-114 414.5 336 66.4
Cfa005577 Carpinus fangiana HOM05D007321 ORTHO05D009244 5.3e-113 411.8 319 66.5
ClCG10G015890 Citrullus lanatus HOM05D007321 ORTHO05D009244 9.0e-113 411.0 286 72.0
COL.COLO4_20870 Corchorus olitorius HOM05D007321 ORTHO05D009244 9.0e-113 411.0 326 65.3
Duzib052G0820 Durio zibethinus HOM05D007321 ORTHO05D009244 9.0e-113 411.0 333 66.1
MELO3C009790.2 Cucumis melo HOM05D007321 ORTHO05D009244 1.5e-112 410.2 286 73.1
CsaV3_3G040590 Cucumis sativus L. HOM05D007321 ORTHO05D009244 2.0e-112 409.8 282 74.1
Gorai.012G140200 Gossypium raimondii HOM05D007321 ORTHO05D009244 5.8e-112 408.3 335 66.3
Gohir.D04G153300 Gossypium hirsutum HOM05D007321 ORTHO05D009244 1.3e-111 407.1 335 66.3
Nitab4.5_0002105g0030 Nicotiana tabacum HOM05D007321 ORTHO05D009244 1.7e-111 406.8 335 64.2
BolC5t34500H Brassica oleracea HOM05D007321 ORTHO05D009244 2.2e-111 406.4 333 64.3
PGSC0003DMG400003660 Solanum tuberosum HOM05D007321 ORTHO05D009244 2.9e-111 406.0 332 63.9
MSTRG.16564 Avicennia marina HOM05D007321 ORTHO05D009244 4.9e-111 405.2 329 64.4
Oeu037200.1 Olea europaea HOM05D007321 ORTHO05D009244 4.9e-111 405.2 333 64.6
Solyc02g083410.4 Solanum lycopersicum HOM05D007321 ORTHO05D009244 4.9e-111 405.2 323 63.5
CARHR083990 Cardamine hirsuta HOM05D007321 ORTHO05D009244 6.5e-111 404.8 332 63.6
A05p39470 Brassica napus HOM05D007321 ORTHO05D009244 8.4e-111 404.4 333 64.3
C05p58490 Brassica napus HOM05D007321 ORTHO05D009244 8.4e-111 404.4 334 64.4
Peaxi162Scf00328g00127 Petunia axillaris HOM05D007321 ORTHO05D009244 8.4e-111 404.4 329 62.9
Cc02_g21870 Coffea canephora HOM05D007321 ORTHO05D009244 1.1e-110 404.1 338 62.4
THA.LOC104826997 Tarenaya hassleriana HOM05D007321 ORTHO05D009244 1.1e-110 404.1 294 70.7
Gohir.A04G112300 Gossypium hirsutum HOM05D007321 ORTHO05D009244 1.4e-110 403.7 338 66.3
Sopen02g028190 Solanum pennellii HOM05D007321 ORTHO05D009244 1.9e-110 403.3 323 63.5
ECA236G2671 Erigeron canadensis HOM05D007321 ORTHO05D009244 7.1e-110 401.4 301 66.1
Prupe.6G043200 Prunus persica HOM05D007321 ORTHO05D009244 7.1e-110 401.4 335 64.8
BraA05t22728Z Brassica rapa HOM05D007321 ORTHO05D009244 1.6e-109 400.2 333 63.4
CANSAT80G1420 Cannabis sativa HOM05D007321 ORTHO05D009244 2.7e-109 399.4 307 66.1
BcaC05g29686 Brassica carinata HOM05D007321 ORTHO05D009244 3.5e-109 399.1 334 63.8
HanXRQChr11g0337111 Helianthus annuus HOM05D007321 ORTHO05D009244 7.9e-109 397.9 303 68.0
Carub.0003s0867 Capsella rubella HOM05D007321 ORTHO05D009244 1.8e-108 396.7 333 62.5
Sp3g07930 Schrenkiella parvula HOM05D007321 ORTHO05D009244 8.7e-108 394.4 337 61.1
AT3G09580 Arabidopsis thaliana HOM05D007321 ORTHO05D009244 1.1e-107 394.0 333 62.2
EL10Ac8g19338 Beta vulgaris HOM05D007321 ORTHO05D009244 1.5e-107 393.7 295 66.8
Ah.14g085390 Amaranthus hybridus HOM05D007321 ORTHO05D009244 7.4e-107 391.3 297 66.3
Lalb_Chr07g0189441 Lupinus albus HOM05D007321 ORTHO05D009244 2.2e-106 389.8 319 62.7
SalBow5G3411 Salvia bowleyana HOM05D007321 ORTHO05D009244 3.7e-106 389.0 332 64.2
SGA_v2.0_scaffold332G48942 Striga asiatica HOM05D007321 ORTHO05D009244 6.3e-106 388.3 335 63.6
AL3G20750 Arabidopsis lyrata HOM05D007321 ORTHO05D009244 8.2e-106 387.9 333 61.0
Sed0000618 Sechium edule HOM05D007321 ORTHO05D009244 1.5e-104 383.6 291 67.4
CSS0020188 Camellia sinensis var. sinensis HOM05D007321 ORTHO05D009244 1.0e-103 380.9 311 66.9
MBI05_g44827_MAGBIO Magnolia biondii HOM05D007321 ORTHO05D009244 1.0e-100 370.9 326 62.9
DCAR_021840 Daucus carota HOM05D000446 ORTHO05D000321 1.8e-100 370.2 332 58.7
Aa31LG3G2030 Aethionema arabicum HOM05D007321 ORTHO05D009244 3.0e-100 369.4 354 56.8
Sc14g0002750 Simmondsia chinensis HOM05D007321 ORTHO05D009244 5.7e-99 365.2 324 60.5
Thhalv10003042m.g Eutrema salsugineum HOM05D007321 ORTHO05D009244 1.7e-98 363.6 335 57.3
AUR62027387 Chenopodium quinoa HOM05D007321 ORTHO05D009244 6.3e-98 361.7 255 70.6
SEGI_02418 Sequoiadendron giganteum HOM05D007321 ORTHO05D009244 2.9e-95 352.8 317 57.7
ATR0580G200 Amborella trichopoda HOM05D007321 ORTHO05D009244 3.6e-93 345.9 321 57.3
Pp3c2_19910 Physcomitrium patens HOM05D007321 ORTHO05D009244 4.7e-93 345.5 283 59.4
Mapoly0005s0009 Marchantia polymorpha HOM05D007321 ORTHO05D009244 8.8e-92 341.3 322 55.6
SMO116G0156 Selaginella moellendorffii HOM05D007321 ORTHO05D009244 1.8e-89 333.6 280 60.0
CDE06G0306 Ceratophyllum demersum HOM05D007321 ORTHO05D009244 5.9e-88 328.6 262 64.5
AagrBONN_evm.TU.Sc2ySwM_344.1849 Anthoceros agrestis HOM05D007321 ORTHO05D009244 5.2e-84 315.5 284 54.6
Cre12.g560900 Chlamydomonas reinhardtii HOM05D007321 ORTHO05D009244 1.2e-77 294.3 278 54.7
unitig_8.g3471 Utricularia gibba HOM05D007321 ORTHO05D009244 1.7e-74 283.9 218 67.0
AagrBONN_evm.TU.Sc2ySwM_344.1850 Anthoceros agrestis HOM05D007321 ORTHO05D009244 8.3e-74 281.6 220 61.4
Zm00001eb328010 Zea mays HOM05D007321 ORTHO05D009244 7.0e-73 278.5 302 50.0
TPR.G10452 Trifolium pratense HOM05D007321 ORTHO05D009244 2.9e-71 273.1 223 65.0
MCO04G135 Micromonas commoda HOM05D007321 ORTHO05D009244 4.4e-67 259.2 302 49.0
CBR_g49724 Chara braunii HOM05D007321 ORTHO05D009244 1.7e-66 257.3 306 47.1
PRCOL_00005484 Prasinoderma coloniale HOM05D007321 ORTHO05D009244 3.1e-65 253.1 273 48.0
Os07g0626800 Oryza sativa ssp. japonica HOM05D007321 ORTHO05D009244 4.0e-60 236.1 256 50.8
CAN.G890.33 Capsicum annuum HOM05D007321 ORTHO05D009244 1.6e-53 214.2 209 56.0
Cpa.g.sc52.12 Carica papaya HOM05D007321 ORTHO05D009244 1.8e-36 157.5 122 66.4
HPP92_016846 Vanilla planifolia HOM05D007321 ORTHO05D009244 2.6e-27 127.1 111 57.7
Nn3g19797 Nelumbo nucifera HOM05D007321 ORTHO05D009244 4.5e-11 73.2 59 61.0
BraA10t44490Z Brassica rapa HOM05D007163 ORTHO05D009213 4.6e-08 63.2 175 26.3
VMungo1383G0219 Vigna mungo HOM05D007163 ORTHO05D009213 4.6e-08 63.2 289 23.5
Atru.chr6.2010 Acer truncatum HOM05D000461 ORTHO05D001840 2.3e-07 60.8 286 24.5
Pp3c1_4180 Physcomitrium patens HOM05D007163 ORTHO05D009213 2.3e-07 60.8 184 27.2
QL04p060254 Quercus lobata HOM05D000461 ORTHO05D001840 3.0e-07 60.5 229 26.2
Ca_08364_v3 Cicer arietinum L. HOM05D007163 ORTHO05D009213 3.9e-07 60.1 171 29.2
TPR.G38344 Trifolium pratense HOM05D007163 ORTHO05D009213 3.9e-07 60.1 193 26.4
BcaB02g07487 Brassica carinata HOM05D000461 ORTHO05D001840 5.1e-07 59.7 236 25.4
MBI18_g11236_MAGBIO Magnolia biondii HOM05D000461 ORTHO05D001840 5.1e-07 59.7 263 26.6
BcaB08g36967 Brassica carinata HOM05D007163 ORTHO05D009213 6.7e-07 59.3 173 27.7
A10p24250 Brassica napus HOM05D007163 ORTHO05D009213 6.7e-07 59.3 173 27.7
Glyma.19G087600 Glycine max HOM05D007163 ORTHO05D009213 8.7e-07 58.9 184 26.6
C06p25860 Brassica napus HOM05D000461 ORTHO05D001840 1.1e-06 58.5 236 25.4
BolC6t37748H Brassica oleracea HOM05D000461 ORTHO05D001840 1.1e-06 58.5 236 25.4
Manes.02G090500 Manihot esculenta HOM05D000461 ORTHO05D001840 1.1e-06 58.5 233 25.3
PSO541G2373 Papaver somniferum HOM05D000461 ORTHO05D001840 1.1e-06 58.5 274 24.8
GSVIVG01020812001 Vitis vinifera HOM05D000461 ORTHO05D001840 1.1e-06 58.5 257 25.3
Aa31LG11G15010 Aethionema arabicum HOM05D007163 ORTHO05D009213 1.5e-06 58.2 173 28.3
PRCOL_00005990 Prasinoderma coloniale HOM05D001254 ORTHO05D001386 1.5e-06 58.2 170 27.6
Zm00001eb070310 Zea mays HOM05D000461 ORTHO05D001840 1.5e-06 58.2 225 26.7
arahy.Tifrunner.gnm1.ann1.AM4HSV Arachis hypogaea HOM05D000461 ORTHO05D001840 1.9e-06 57.8 151 26.5
arahy.Tifrunner.gnm1.ann1.YX4IN3 Arachis hypogaea HOM05D001254 ORTHO05D001386 1.9e-06 57.8 173 27.2
Glyma.02G282000 Glycine max HOM05D000461 ORTHO05D001840 1.9e-06 57.8 243 25.9
Glyma.18G116300 Glycine max HOM05D000461 ORTHO05D001840 1.9e-06 57.8 258 22.9
arahy.Tifrunner.gnm1.ann1.UIG78U Arachis hypogaea HOM05D000461 ORTHO05D001840 2.5e-06 57.4 151 26.5
C09p62940 Brassica napus HOM05D007163 ORTHO05D009213 2.5e-06 57.4 173 26.6
BolC9t59131H Brassica oleracea HOM05D007163 ORTHO05D009213 2.5e-06 57.4 187 25.7
Medtr5g090300 Medicago truncatula HOM05D000461 ORTHO05D001840 2.5e-06 57.4 59 42.4
AL6G24890 Arabidopsis lyrata HOM05D007163 ORTHO05D009213 3.3e-06 57.0 173 27.7
BcaC04g19052 Brassica carinata HOM05D007163 ORTHO05D009213 3.3e-06 57.0 173 26.6
Ciclev10031239m.g Citrus clementina HOM05D000461 ORTHO05D001840 3.3e-06 57.0 71 45.1
Lj1C523T2 Lonicera japonica HOM05D000461 ORTHO05D001840 3.3e-06 57.0 166 27.1
Lalb_Chr10g0106451 Lupinus albus HOM05D000461 ORTHO05D001840 3.3e-06 57.0 55 47.3
Medtr7g031310 Medicago truncatula HOM05D007163 ORTHO05D009213 3.3e-06 57.0 184 27.2
Sp6g29810 Schrenkiella parvula HOM05D007163 ORTHO05D009213 3.3e-06 57.0 173 27.2
Cpa.g.sc50.126 Carica papaya HOM05D000461 ORTHO05D001840 4.3e-06 56.6 216 25.0
CiPaw.04G136200 Carya illinoinensis HOM05D000461 ORTHO05D001840 4.3e-06 56.6 60 48.3
Potri.005G207300 Populus trichocarpa HOM05D000461 ORTHO05D001840 4.3e-06 56.6 144 27.1
CSS0047456 Camellia sinensis var. sinensis HOM05D001254 ORTHO05D001386 5.6e-06 56.2 77 36.4
CiPaw.03G197800 Carya illinoinensis HOM05D000461 ORTHO05D001840 5.6e-06 56.2 55 47.3
CsaV3_6G001080 Cucumis sativus L. HOM05D007163 ORTHO05D009213 5.6e-06 56.2 77 40.3
Lj1A522T61 Lonicera japonica HOM05D000461 ORTHO05D001840 5.6e-06 56.2 140 27.9
Psat5g194080 Pisum sativum HOM05D000461 ORTHO05D001840 5.6e-06 56.2 130 26.2
AT5G14220 Arabidopsis thaliana HOM05D007163 ORTHO05D009213 7.4e-06 55.8 171 26.3
CARHR199120 Cardamine hirsuta HOM05D007163 ORTHO05D009213 7.4e-06 55.8 173 26.6
CDE08G0540 Ceratophyllum demersum HOM05D000461 ORTHO05D001840 7.4e-06 55.8 227 25.6
TPR.G8774 Trifolium pratense HOM05D000461 ORTHO05D001840 7.4e-06 55.8 64 40.6
Migut.M00107 Erythranthe guttata HOM05D000461 ORTHO05D001840 9.6e-06 55.5 70 44.3
Eucgr.H02625 Eucalyptus grandis HOM05D002360 ORTHO05D006971 9.6e-06 55.5 96 40.6
Lj6g0004244 Lotus japonicus HOM05D000461 ORTHO05D001840 9.6e-06 55.5 219 23.7
PSO541G2331 Papaver somniferum HOM05D000461 ORTHO05D001840 9.6e-06 55.5 227 25.6
PSO675G0781 Papaver somniferum HOM05D000461 ORTHO05D001840 9.6e-06 55.5 227 25.6
unitig_699.g19634 Utricularia gibba HOM05D000461 ORTHO05D001840 9.6e-06 55.5 85 38.8


User provided reference genes

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