Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G1658 Trochodendron aralioides HOM05D004626 ORTHO05D005185 3.4e-62 241.5 125 100.0
TAR381G1723 Trochodendron aralioides HOM05D004626 ORTHO05D005185 8.0e-51 203.8 120 87.5
TAR628G0369 Trochodendron aralioides HOM05D004626 ORTHO05D005185 1.4e-50 203.0 120 85.0
Nn2g14516 Nelumbo nucifera HOM05D004626 ORTHO05D005185 5.7e-49 197.6 120 82.5
Dinv21908 Davidia involucrata HOM05D004626 ORTHO05D005185 4.8e-48 194.5 120 80.0
MBI05_g19353_MAGBIO Magnolia biondii HOM05D004626 ORTHO05D005185 6.3e-48 194.1 120 80.0
Psat5g090160 Pisum sativum HOM05D004626 ORTHO05D005185 8.2e-48 193.7 120 78.3
CANSAT01G3216 Cannabis sativa HOM05D004626 ORTHO05D005185 2.4e-47 192.2 120 78.3
Ca_16525_v3 Cicer arietinum L. HOM05D004626 ORTHO05D005185 2.4e-47 192.2 120 77.5
Aqoxy6G00796 Aquilegia oxysepala HOM05D004626 ORTHO05D005185 5.3e-47 191.0 120 80.0
Oeu056607.1 Olea europaea HOM05D004626 ORTHO05D005185 5.3e-47 191.0 120 77.5
Lsat_1_v5_gn_4_141400 Lactuca sativa HOM05D004626 ORTHO05D005185 7.0e-47 190.7 121 76.9
Dinv13189 Davidia involucrata HOM05D004626 ORTHO05D005185 9.1e-47 190.3 120 78.3
GSVIVG01002466001 Vitis vinifera HOM05D004626 ORTHO05D005185 9.1e-47 190.3 120 78.3
ClCG10G009000 Citrullus lanatus HOM05D004626 ORTHO05D005185 1.2e-46 189.9 120 76.7
CsaV3_4G008860 Cucumis sativus L. HOM05D004626 ORTHO05D005185 2.0e-46 189.1 120 75.8
Cfa002662 Carpinus fangiana HOM05D004626 ORTHO05D005185 3.5e-46 188.3 120 75.8
Haze_24931 Corylus avellana HOM05D004626 ORTHO05D005185 3.5e-46 188.3 120 75.8
HanXRQChr10g0305361 Helianthus annuus HOM05D004626 ORTHO05D005185 3.5e-46 188.3 111 82.0
CAN.G222.27 Capsicum annuum HOM05D004626 ORTHO05D005185 4.5e-46 188.0 121 76.9
SGA_v2.0_scaffold111G31515 Striga asiatica HOM05D004626 ORTHO05D005185 4.5e-46 188.0 120 77.5
ECA232G0540 Erigeron canadensis HOM05D004626 ORTHO05D001353 5.9e-46 187.6 120 75.8
Sed0012532 Sechium edule HOM05D004626 ORTHO05D005185 5.9e-46 187.6 120 77.5
Hund13624 Selenicereus undatus HOM05D004626 ORTHO05D005185 5.9e-46 187.6 120 76.7
CiPaw.03G141900 Carya illinoinensis HOM05D004626 ORTHO05D005185 7.7e-46 187.2 120 75.0
TPR.G17855 Trifolium pratense HOM05D004626 ORTHO05D005185 7.7e-46 187.2 120 76.7
Cc07_g15200 Coffea canephora HOM05D004626 ORTHO05D005185 1.0e-45 186.8 111 81.1
MELO3C018951.2 Cucumis melo HOM05D004626 ORTHO05D005185 1.3e-45 186.4 120 75.0
Nitab4.5_0000004g0320 Nicotiana tabacum HOM05D004626 ORTHO05D005185 2.2e-45 185.7 120 76.7
Nitab4.5_0003026g0030 Nicotiana tabacum HOM05D004626 ORTHO05D005185 2.2e-45 185.7 120 76.7
SGA_v2.0_scaffold54G19499 Striga asiatica HOM05D004626 ORTHO05D005185 2.9e-45 185.3 120 75.8
DCAR_014224 Daucus carota HOM05D004626 ORTHO05D005185 5.0e-45 184.5 120 74.2
Nitab4.5_0002169g0010 Nicotiana tabacum HOM05D004626 ORTHO05D005185 6.5e-45 184.1 120 75.8
Hund16286 Selenicereus undatus HOM05D004626 ORTHO05D005185 8.5e-45 183.7 120 75.8
Sc20g0005870 Simmondsia chinensis HOM05D004626 ORTHO05D005185 8.5e-45 183.7 120 75.0
Solyc11g011140.2 Solanum lycopersicum HOM05D004626 ORTHO05D005185 8.5e-45 183.7 120 75.0
Sopen11g005900 Solanum pennellii HOM05D004626 ORTHO05D005185 8.5e-45 183.7 120 75.0
Actinidia28864 Actinidia chinensis HOM05D004626 ORTHO05D005185 1.1e-44 183.3 114 80.7
Eucgr.I00432 Eucalyptus grandis HOM05D004626 ORTHO05D005185 1.1e-44 183.3 110 79.1
Glyma.18G017100 Glycine max HOM05D004626 ORTHO05D005185 1.5e-44 183.0 120 74.2
QL06p049512 Quercus lobata HOM05D004626 ORTHO05D005185 1.5e-44 183.0 120 71.7
CDE10G0605 Ceratophyllum demersum HOM05D004626 ORTHO05D005185 1.9e-44 182.6 120 74.2
CSS0038413 Camellia sinensis var. sinensis HOM05D004626 ORTHO05D005185 2.5e-44 182.2 114 78.1
Migut.H02360 Erythranthe guttata HOM05D004626 ORTHO05D005185 2.5e-44 182.2 121 76.0
Lalb_Chr11g0075381 Lupinus albus HOM05D004626 ORTHO05D005185 2.5e-44 182.2 120 72.5
Prupe.6G187100 Prunus persica HOM05D004626 ORTHO05D005185 2.5e-44 182.2 120 73.3
Lj6g0027398 Lotus japonicus HOM05D004626 ORTHO05D005185 3.2e-44 181.8 120 74.2
Cpa.g.sc974.3 Carica papaya HOM05D004626 ORTHO05D005185 4.2e-44 181.4 110 80.0
Ciclev10026391m.g Citrus clementina HOM05D004626 ORTHO05D005185 7.2e-44 180.6 120 73.3
AUR62002008 Chenopodium quinoa HOM05D004626 ORTHO05D005185 9.4e-44 180.3 120 73.3
AUR62003794 Chenopodium quinoa HOM05D004626 ORTHO05D005185 9.4e-44 180.3 120 73.3
Phvul.008G217800 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 2.1e-43 179.1 120 72.5
Phvul.L001740 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 2.1e-43 179.1 120 72.5
Phvul.L002040 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 2.1e-43 179.1 120 72.5
Sc16g0005030 Simmondsia chinensis HOM05D004626 ORTHO05D005185 2.1e-43 179.1 120 73.3
Ah.02g122510 Amaranthus hybridus HOM05D004626 ORTHO05D005185 4.7e-43 177.9 120 71.7
MSTRG.2568 Avicennia marina HOM05D004626 ORTHO05D005185 4.7e-43 177.9 120 72.5
Manes.12G134800 Manihot esculenta HOM05D004626 ORTHO05D005185 4.7e-43 177.9 120 71.7
Lj4A891T55 Lonicera japonica HOM05D004626 ORTHO05D005185 1.0e-42 176.8 127 70.1
PSO541G2613 Papaver somniferum HOM05D004626 ORTHO05D005185 1.8e-42 176.0 120 73.3
PSO781G0234 Papaver somniferum HOM05D004626 ORTHO05D005185 1.8e-42 176.0 120 73.3
TWI77G0829 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 1.8e-42 176.0 111 76.6
EL10Ac6g15105 Beta vulgaris HOM05D004626 ORTHO05D005185 2.3e-42 175.6 120 71.7
MD01G1030100 Malus domestica HOM05D004626 ORTHO05D005185 3.0e-42 175.3 121 70.2
Thecc.01G101400 Theobroma cacao HOM05D004626 ORTHO05D005185 3.0e-42 175.3 111 76.6
TWI53G1689 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 3.0e-42 175.3 111 75.7
BcaNung00909 Brassica carinata HOM05D004626 ORTHO05D005185 6.8e-42 174.1 110 76.4
C01p00890 Brassica napus HOM05D004626 ORTHO05D005185 6.8e-42 174.1 110 76.4
BolC1t00090H Brassica oleracea HOM05D004626 ORTHO05D005185 6.8e-42 174.1 110 76.4
Rhsim08G0010500 Rhododendron simsii HOM05D004626 ORTHO05D005185 6.8e-42 174.1 117 71.8
Potri.005G075500 Populus trichocarpa HOM05D004626 ORTHO05D005185 8.8e-42 173.7 108 80.6
VMungo0647G0150 Vigna mungo HOM05D004626 ORTHO05D005185 1.2e-41 173.3 116 70.7
A01p00780 Brassica napus HOM05D004626 ORTHO05D005185 2.0e-41 172.6 110 76.4
BraA01t00081Z Brassica rapa HOM05D004626 ORTHO05D005185 2.0e-41 172.6 110 76.4
Thhalv10026378m.g Eutrema salsugineum HOM05D004626 ORTHO05D005185 2.0e-41 172.6 110 76.4
Sp7g36010 Schrenkiella parvula HOM05D004626 ORTHO05D005185 2.0e-41 172.6 110 76.4
arahy.Tifrunner.gnm1.ann1.ZXJH7W Arachis hypogaea HOM05D004626 ORTHO05D005185 3.4e-41 171.8 120 69.2
BcaNung06392 Brassica carinata HOM05D004626 ORTHO05D005185 4.4e-41 171.4 110 75.5
Duzib147G1109 Durio zibethinus HOM05D004626 ORTHO05D005185 4.4e-41 171.4 111 74.8
Medtr3g087190 Medicago truncatula HOM05D004626 ORTHO05D005185 4.4e-41 171.4 121 67.8
unitig_749.g13443 Utricularia gibba HOM05D004626 ORTHO05D005185 5.7e-41 171.0 118 72.0
FAN19G0994 Fragaria x ananassa HOM05D004626 ORTHO05D005185 7.5e-41 170.6 109 74.3
FAN23G0429 Fragaria x ananassa HOM05D004626 ORTHO05D005185 7.5e-41 170.6 109 74.3
FAN26G0520 Fragaria x ananassa HOM05D004626 ORTHO05D005185 7.5e-41 170.6 109 74.3
Nitab4.5_0012380g0020 Nicotiana tabacum HOM05D004626 ORTHO05D005185 9.8e-41 170.2 106 77.4
C07p62810 Brassica napus HOM05D004626 ORTHO05D005185 1.3e-40 169.9 110 73.6
BolC7t46695H Brassica oleracea HOM05D004626 ORTHO05D005185 1.3e-40 169.9 110 73.6
ATR0693G394 Amborella trichopoda HOM05D004626 ORTHO05D005185 1.7e-40 169.5 120 66.7
RcHm_v2.0_Chr2g0113491 Rosa chinensis HOM05D004626 ORTHO05D005185 2.2e-40 169.1 111 73.0
AT4G39880 Arabidopsis thaliana HOM05D004626 ORTHO05D005185 2.8e-40 168.7 110 73.6
FvH4_1g20880 Fragaria vesca HOM05D004626 ORTHO05D005185 2.8e-40 168.7 109 73.4
AL7G12120 Arabidopsis lyrata HOM05D004626 ORTHO05D005185 3.7e-40 168.3 110 73.6
Gohir.D11G221600 Gossypium hirsutum HOM05D004626 ORTHO05D005185 4.8e-40 167.9 111 73.0
PGR102G1283 Punica granatum HOM05D004626 ORTHO05D005185 4.8e-40 167.9 108 77.8
Carub.0007s0181 Capsella rubella HOM05D004626 ORTHO05D005185 6.3e-40 167.5 110 72.7
Gorai.007G238600 Gossypium raimondii HOM05D004626 ORTHO05D005185 6.3e-40 167.5 111 72.1
THA.LOC104807692 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 6.3e-40 167.5 117 70.1
CARHR246820 Cardamine hirsuta HOM05D004626 ORTHO05D005185 8.3e-40 167.2 110 72.7
Gohir.A11G201300 Gossypium hirsutum HOM05D004626 ORTHO05D005185 8.3e-40 167.2 111 72.1
HPP92_019309 Vanilla planifolia HOM05D004626 ORTHO05D005185 8.3e-40 167.2 112 75.0
MD15G1324000 Malus domestica HOM05D004626 ORTHO05D005185 1.1e-39 166.8 109 72.5
Aa31LG6G15380 Aethionema arabicum HOM05D004626 ORTHO05D005185 2.4e-39 165.6 110 71.8
Duzib264G0371 Durio zibethinus HOM05D004626 ORTHO05D005185 2.4e-39 165.6 110 71.8
SHI34078 Sapria himalayana HOM05D004626 ORTHO05D005185 2.4e-39 165.6 109 73.4
arahy.Tifrunner.gnm1.ann1.IYB3ER Arachis hypogaea HOM05D004626 ORTHO05D005185 4.1e-39 164.9 117 67.5
COL.COLO4_09965 Corchorus olitorius HOM05D004626 ORTHO05D005185 4.1e-39 164.9 102 79.4
Atru.chr4.63 Acer truncatum HOM05D004626 ORTHO05D005185 1.6e-38 162.9 109 71.6
BcaNung03404 Brassica carinata HOM05D004626 ORTHO05D005185 3.5e-38 161.8 106 72.6
A03p65840 Brassica napus HOM05D004626 ORTHO05D005185 7.7e-38 160.6 106 71.7
BraA03t15636Z Brassica rapa HOM05D004626 ORTHO05D005185 7.7e-38 160.6 106 71.7
BcaNung02302 Brassica carinata HOM05D004626 ORTHO05D005185 2.3e-37 159.1 106 69.8
SEGI_37892 Sequoiadendron giganteum HOM05D004626 ORTHO05D005185 8.6e-37 157.1 109 67.9
TPR.G17173 Trifolium pratense HOM05D004626 ORTHO05D005185 1.8e-34 149.4 91 81.3
Sabra05G0062000 Salix brachista HOM05D004626 ORTHO05D005185 1.5e-33 146.4 91 79.1
Hma1.2p1_0308F.1_g120190 Hydrangea macrophylla HOM05D004626 ORTHO05D005185 2.0e-33 146.0 91 76.9
Os07g0415200 Oryza sativa ssp. japonica HOM05D004626 ORTHO05D005185 9.8e-33 143.7 112 62.5
Zm00001eb120260 Zea mays HOM05D004626 ORTHO05D005185 3.1e-31 138.7 110 60.0
MD06G1167700 Malus domestica HOM05D004626 ORTHO05D005185 4.1e-31 138.3 128 57.0
FAN28G0327 Fragaria x ananassa HOM05D004626 ORTHO05D005185 1.2e-30 136.7 109 64.2
Cfa005597 Carpinus fangiana HOM05D004626 ORTHO05D005185 2.7e-30 135.6 105 63.8
QL11p020935 Quercus lobata HOM05D004626 ORTHO05D005185 1.5e-28 129.8 101 61.4
Pp3c1_13270 Physcomitrium patens HOM05D004626 ORTHO05D005185 2.5e-28 129.0 102 60.8
QL11p021166 Quercus lobata HOM05D004626 ORTHO05D005185 3.3e-28 128.6 101 60.4
arahy.Tifrunner.gnm1.ann1.VCFG2H Arachis hypogaea HOM05D004626 ORTHO05D005185 7.3e-28 127.5 100 62.0
CiPaw.05G035400 Carya illinoinensis HOM05D004626 ORTHO05D005185 7.3e-28 127.5 111 57.7
Mapoly0065s0037 Marchantia polymorpha HOM05D004626 ORTHO05D005185 2.8e-27 125.6 109 55.0
DCAR_001782 Daucus carota HOM05D004626 ORTHO05D005185 6.1e-27 124.4 80 73.8
Peaxi162Scf00611g00021 Petunia axillaris HOM05D004626 ORTHO05D005185 1.4e-26 123.2 80 73.8
Nitab4.5_0000308g0400 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.8e-26 122.9 79 75.9
VMungo1383G1685 Vigna mungo HOM05D004626 ORTHO05D005185 3.0e-26 122.1 71 83.1
Glyma.08G135700 Glycine max HOM05D004626 ORTHO05D005185 2.6e-25 119.0 101 61.4
Glyma.05G178600 Glycine max HOM05D004626 ORTHO05D005185 4.4e-25 118.2 100 62.0
Nn1g04969 Nelumbo nucifera HOM05D004626 ORTHO05D005185 2.9e-24 115.5 111 55.9
vmacro18600 Vaccinium macrocarpon HOM05D004626 ORTHO05D005185 1.9e-23 112.8 76 72.4
Lj4g0016107 Lotus japonicus HOM05D004626 ORTHO05D005185 1.2e-22 110.2 92 54.3
Phvul.002G256100 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 6.0e-22 107.8 101 54.5
Potri.007G093100 Populus trichocarpa HOM05D004626 ORTHO05D005185 6.6e-21 104.4 108 54.6
VMungo0251G0963 Vigna mungo HOM05D004626 ORTHO05D005185 6.6e-21 104.4 101 55.4
Lalb_Chr12g0203831 Lupinus albus HOM05D004626 ORTHO05D005185 1.2e-19 100.1 99 52.5
THA.LOC104818439 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 1.2e-19 100.1 91 54.9
Nitab4.5_0006375g0050 Nicotiana tabacum HOM05D004626 ORTHO05D005185 2.8e-19 99.0 88 63.6
TPR.G6292 Trifolium pratense HOM05D004626 ORTHO05D005185 1.4e-18 96.7 103 49.5
Lalb_Chr22g0353781 Lupinus albus HOM05D004626 ORTHO05D005185 3.4e-17 92.0 71 60.6
SMO134G0295 Selaginella moellendorffii HOM05D004626 ORTHO05D005185 9.8e-17 90.5 98 43.9
Gohir.A02G143100 Gossypium hirsutum HOM05D004626 ORTHO05D005185 6.4e-16 87.8 64 68.8
SalBow3G4134 Salvia bowleyana HOM05D004626 ORTHO05D005185 2.4e-15 85.9 66 60.6
Gohir.D03G037250 Gossypium hirsutum HOM05D004626 ORTHO05D005185 3.2e-15 85.5 67 64.2
AagrBONN_evm.TU.Sc2ySwM_117.40 Anthoceros agrestis HOM05D004626 ORTHO05D005185 5.4e-15 84.7 85 48.2
Medtr3g079680 Medicago truncatula HOM05D004626 ORTHO05D005185 1.6e-14 83.2 92 52.2
Ciclev10029799m.g Citrus clementina HOM05D004626 ORTHO05D005185 2.7e-14 82.4 91 50.5
Medtr8g090225 Medicago truncatula HOM05D004626 ORTHO05D005185 6.0e-14 81.3 81 53.1
MCO11G885 Micromonas commoda HOM05D004626 ORTHO05D005185 7.3e-12 74.3 87 39.1


User provided reference genes

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