Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G1643 Trochodendron aralioides HOM05D005305 ORTHO05D006394 2.3e-105 385.6 197 100.0
TAR624G0561 Trochodendron aralioides HOM05D005305 ORTHO05D006394 3.5e-37 159.1 87 92.0
Nn5g28774 Nelumbo nucifera HOM05D005305 ORTHO05D006394 5.5e-30 135.2 154 49.4
Nn1g06067 Nelumbo nucifera HOM05D005305 ORTHO05D006394 8.5e-23 111.3 129 45.7
Potri.001G306800 Populus trichocarpa HOM05D005305 ORTHO05D006394 3.8e-15 85.9 125 41.6
SalBow5G2993 Salvia bowleyana HOM05D005305 ORTHO05D006394 1.1e-14 84.3 151 42.4
Gohir.D12G092500 Gossypium hirsutum HOM05D005305 ORTHO05D006394 3.2e-14 82.8 120 40.8
Gorai.008G100000 Gossypium raimondii HOM05D005305 ORTHO05D006394 3.2e-14 82.8 120 40.8
Atru.chr4.616 Acer truncatum HOM05D005305 ORTHO05D006394 4.2e-14 82.4 119 41.2
Sabra19G0004600 Salix brachista HOM05D005305 ORTHO05D006394 4.2e-14 82.4 178 36.5
Manes.12G149900 Manihot esculenta HOM05D005305 ORTHO05D006394 5.5e-14 82.0 173 35.3
Potri.019G002300 Populus trichocarpa HOM05D005305 ORTHO05D006394 5.5e-14 82.0 176 35.2
PGSC0003DMG400035592 Solanum tuberosum HOM05D005305 ORTHO05D006394 7.2e-14 81.6 93 50.5
Migut.L00049 Erythranthe guttata HOM05D005305 ORTHO05D006394 9.4e-14 81.3 103 47.6
Nn1g04620 Nelumbo nucifera HOM05D005305 ORTHO05D006394 1.2e-13 80.9 111 41.4
Thecc.01G118700 Theobroma cacao HOM05D005305 ORTHO05D006394 1.6e-13 80.5 150 36.7
Aqoxy6G00392 Aquilegia oxysepala HOM05D005305 ORTHO05D006394 2.1e-13 80.1 141 41.1
Oeu035198.1 Olea europaea HOM05D005305 ORTHO05D006394 2.1e-13 80.1 137 40.1
Peaxi162Scf00025g00263 Petunia axillaris HOM05D005305 ORTHO05D006394 2.1e-13 80.1 94 47.9
Ah.03g133360 Amaranthus hybridus HOM05D005305 ORTHO05D006394 2.7e-13 79.7 91 51.6
EL10Ac6g13873 Beta vulgaris HOM05D005305 ORTHO05D006394 3.6e-13 79.3 91 51.6
Gohir.A11G210433 Gossypium hirsutum HOM05D005305 ORTHO05D006394 6.1e-13 78.6 120 39.2
Nitab4.5_0001582g0090 Nicotiana tabacum HOM05D005305 ORTHO05D006394 6.1e-13 78.6 93 50.5
Solyc11g005490.1 Solanum lycopersicum HOM05D005305 ORTHO05D006394 1.4e-12 77.4 93 46.2
Sopen11g001490 Solanum pennellii HOM05D005305 ORTHO05D006394 1.4e-12 77.4 93 46.2
ClCG09G014160 Citrullus lanatus HOM05D005305 ORTHO05D006394 3.9e-12 75.9 129 39.5
Duzib187G0918 Durio zibethinus HOM05D005305 ORTHO05D006394 3.9e-12 75.9 164 36.0
AUR62005501 Chenopodium quinoa HOM05D005305 ORTHO05D006394 5.2e-12 75.5 131 42.0
AUR62024239 Chenopodium quinoa HOM05D005305 ORTHO05D006394 5.2e-12 75.5 131 42.0
Dinv02718 Davidia involucrata HOM05D005305 ORTHO05D006394 6.7e-12 75.1 171 39.2
Lj6g0020123 Lotus japonicus HOM05D005305 ORTHO05D006394 6.7e-12 75.1 128 38.3
Manes.13G081800 Manihot esculenta HOM05D005305 ORTHO05D006394 6.7e-12 75.1 131 37.4
Nitab4.5_0002138g0070 Nicotiana tabacum HOM05D005305 ORTHO05D006394 6.7e-12 75.1 93 49.5
SGA_v2.0_scaffold47G17682 Striga asiatica HOM05D005305 ORTHO05D006394 6.7e-12 75.1 104 44.2
MBI17_g24510_MAGBIO Magnolia biondii HOM05D005305 ORTHO05D006394 1.5e-11 73.9 132 39.4
Sc04g0009640 Simmondsia chinensis HOM05D005305 ORTHO05D006394 1.5e-11 73.9 202 34.2
CsaV3_6G037300 Cucumis sativus L. HOM05D005305 ORTHO05D006394 2.6e-11 73.2 144 36.8
Medtr2g007870 Medicago truncatula HOM05D005305 ORTHO05D006394 2.6e-11 73.2 147 34.0
TWI31G0537 Tripterygium wilfordii HOM05D005305 ORTHO05D006394 2.6e-11 73.2 170 34.7
unitig_32.g10686 Utricularia gibba HOM05D005305 ORTHO05D006394 3.3e-11 72.8 147 36.1
Sed0001621 Sechium edule HOM05D005305 ORTHO05D006394 5.7e-11 72.0 89 49.4
A08p31700 Brassica napus HOM05D005305 ORTHO05D006394 7.4e-11 71.6 151 34.4
arahy.Tifrunner.gnm1.ann1.ZL3PAB Arachis hypogaea HOM05D005305 ORTHO05D006394 9.7e-11 71.2 164 32.3
arahy.Tifrunner.gnm1.ann1.I1A2NR Arachis hypogaea HOM05D005305 ORTHO05D006394 1.3e-10 70.9 164 31.7
BcaB03g13072 Brassica carinata HOM05D005305 ORTHO05D006394 2.2e-10 70.1 129 35.7
A06p11170 Brassica napus HOM05D005305 ORTHO05D006394 2.2e-10 70.1 144 36.1
BolC5t30066H Brassica oleracea HOM05D005305 ORTHO05D006394 2.2e-10 70.1 144 36.1
Cpa.g.sc72.34 Carica papaya HOM05D005305 ORTHO05D006394 2.2e-10 70.1 180 32.2
MELO3C014385.2 Cucumis melo HOM05D005305 ORTHO05D006394 2.2e-10 70.1 89 47.2
Prupe.1G566000 Prunus persica HOM05D005305 ORTHO05D006394 2.2e-10 70.1 137 36.5
VMungo0540G1828 Vigna mungo HOM05D005305 ORTHO05D006394 2.2e-10 70.1 159 34.6
BcaB02g06584 Brassica carinata HOM05D005305 ORTHO05D006394 2.8e-10 69.7 144 36.1
BraA08t35092Z Brassica rapa HOM05D005305 ORTHO05D006394 2.8e-10 69.7 129 35.7
MBI17_g24663_MAGBIO Magnolia biondii HOM05D005305 ORTHO05D006394 3.7e-10 69.3 100 44.0
PSO730G0002 Papaver somniferum HOM05D005305 ORTHO05D006394 3.7e-10 69.3 106 40.6
TPR.G19715 Trifolium pratense HOM05D005305 ORTHO05D006394 3.7e-10 69.3 144 34.7
BraA06t24297Z Brassica rapa HOM05D005305 ORTHO05D006394 6.3e-10 68.6 144 36.1
CSS0043111 Camellia sinensis var. sinensis HOM05D005305 ORTHO05D006394 6.3e-10 68.6 103 41.7
Phvul.006G211300 Phaseolus vulgaris HOM05D005305 ORTHO05D006394 6.3e-10 68.6 126 35.7
TWI79G0764 Tripterygium wilfordii HOM05D005305 ORTHO05D006394 6.3e-10 68.6 125 42.4
COL.COLO4_22382 Corchorus olitorius HOM05D005305 ORTHO05D006394 8.2e-10 68.2 130 36.9
Lj1C922T21 Lonicera japonica HOM05D005305 ORTHO05D006394 8.2e-10 68.2 173 28.9
Sed0003606 Sechium edule HOM05D005305 ORTHO05D006394 8.2e-10 68.2 154 37.0
BcaC07g38772 Brassica carinata HOM05D005305 ORTHO05D006394 1.1e-09 67.8 120 38.3
C08p17050 Brassica napus HOM05D005305 ORTHO05D006394 1.1e-09 67.8 120 38.3
BolC8t49330H Brassica oleracea HOM05D005305 ORTHO05D006394 1.1e-09 67.8 120 38.3
BcaC05g25447 Brassica carinata HOM05D005305 ORTHO05D006394 1.8e-09 67.0 121 37.2
C05p13290 Brassica napus HOM05D005305 ORTHO05D006394 1.8e-09 67.0 121 37.2
Dinv19341 Davidia involucrata HOM05D005305 ORTHO05D006394 1.8e-09 67.0 123 38.2
Lsat_1_v5_gn_7_79481 Lactuca sativa HOM05D005305 ORTHO05D006394 1.8e-09 67.0 146 34.9
CAN.G516.6 Capsicum annuum HOM05D005305 ORTHO05D006394 3.1e-09 66.2 183 33.9
Glyma.08G183700 Glycine max HOM05D005305 ORTHO05D006394 1.2e-08 64.3 148 35.1
MD15G1420000 Malus domestica HOM05D005305 ORTHO05D006394 1.6e-08 63.9 176 30.1
Ca_00097_v3 Cicer arietinum L. HOM05D005305 ORTHO05D006394 2.0e-08 63.5 91 41.8
Ca_29935_v3 Cicer arietinum L. HOM05D005305 ORTHO05D006394 2.0e-08 63.5 91 41.8
CiPaw.05G041500 Carya illinoinensis HOM05D005305 ORTHO05D006394 2.6e-08 63.2 122 36.1
FvH4_5g29740 Fragaria vesca HOM05D005305 ORTHO05D006394 2.6e-08 63.2 135 33.3
HanXRQChr11g0337491 Helianthus annuus HOM05D005305 ORTHO05D006394 2.6e-08 63.2 164 31.1
THA.LOC104814335 Tarenaya hassleriana HOM05D005423 ORTHO05D006223 3.5e-08 62.8 80 42.5
FAN13G2550 Fragaria x ananassa HOM05D005305 ORTHO05D006394 4.5e-08 62.4 140 35.0
DCAR_001409 Daucus carota HOM05D005305 ORTHO05D006394 5.9e-08 62.0 136 36.0
Sabra19G0015300 Salix brachista HOM05D005305 ORTHO05D006394 5.9e-08 62.0 154 33.1
Psat1g219600 Pisum sativum HOM05D005305 ORTHO05D006394 7.7e-08 61.6 91 39.6
RcHm_v2.0_Chr7g0223251 Rosa chinensis HOM05D005305 ORTHO05D006394 7.7e-08 61.6 89 40.4
C02p49000 Brassica napus HOM05D005305 ORTHO05D006394 1.0e-07 61.2 81 43.2
FAN04G1743 Fragaria x ananassa HOM05D005305 ORTHO05D006394 1.3e-07 60.8 132 35.6
HanXRQChr10g0294801 Helianthus annuus HOM05D005305 ORTHO05D006394 1.3e-07 60.8 142 33.1
Actinidia33832 Actinidia chinensis HOM05D005305 ORTHO05D006394 1.7e-07 60.5 88 40.9
A08p11040 Brassica napus HOM05D005423 ORTHO05D006223 1.7e-07 60.5 74 43.2
BolC2t10994H Brassica oleracea HOM05D005305 ORTHO05D006394 1.7e-07 60.5 81 42.0
BraA08t33095Z Brassica rapa HOM05D005423 ORTHO05D006223 1.7e-07 60.5 74 43.2
Carub.0001s2910 Capsella rubella HOM05D005423 ORTHO05D006223 1.7e-07 60.5 78 38.5
Thhalv10009325m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 1.7e-07 60.5 74 44.6
BcaB04g18206 Brassica carinata HOM05D005423 ORTHO05D006223 2.2e-07 60.1 74 41.9
BcaC07g37806 Brassica carinata HOM05D005423 ORTHO05D006223 2.2e-07 60.1 74 41.9
A02p31660 Brassica napus HOM05D005305 ORTHO05D006394 2.2e-07 60.1 81 42.0
BolC8t48195H Brassica oleracea HOM05D005423 ORTHO05D006223 2.2e-07 60.1 74 41.9
AL1G44970 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 2.9e-07 59.7 74 39.2
Carub.0006s3088 Capsella rubella HOM05D005423 ORTHO05D006223 3.8e-07 59.3 106 34.9
EL10Ac5g10610 Beta vulgaris HOM05D005423 ORTHO05D006223 5.0e-07 58.9 106 36.8
ECA236G3147 Erigeron canadensis HOM05D005305 ORTHO05D006394 5.0e-07 58.9 92 34.8
Oeu000200.2 Olea europaea HOM05D005305 ORTHO05D006394 5.0e-07 58.9 110 35.5
Solyc11g072680.1 Solanum lycopersicum HOM05D005423 ORTHO05D006223 5.0e-07 58.9 128 32.0
Sopen11g030350 Solanum pennellii HOM05D005423 ORTHO05D006223 5.0e-07 58.9 128 32.0
EL10Ac4g08760 Beta vulgaris HOM05D005305 ORTHO05D006394 6.5e-07 58.5 91 41.8
CARHR030270 Cardamine hirsuta HOM05D005423 ORTHO05D006223 8.5e-07 58.2 74 41.9
Lalb_Chr15g0090581 Lupinus albus HOM05D005305 ORTHO05D006394 8.5e-07 58.2 164 32.9
HanXRQChr10g0300271 Helianthus annuus HOM05D005305 ORTHO05D006394 1.5e-06 57.4 158 29.7
PGSC0003DMG400025363 Solanum tuberosum HOM05D005423 ORTHO05D006223 1.5e-06 57.4 128 32.8
BcaB01g00727 Brassica carinata HOM05D005423 ORTHO05D006223 1.9e-06 57.0 89 33.7
TAR636G0950 Trochodendron aralioides HOM05D005423 ORTHO05D006223 1.9e-06 57.0 120 29.2
BraA02t08169Z Brassica rapa HOM05D005305 ORTHO05D006394 2.5e-06 56.6 78 42.3
Lalb_Chr11g0073251 Lupinus albus HOM05D005423 ORTHO05D006223 2.5e-06 56.6 105 36.2
Nitab4.5_0004015g0040 Nicotiana tabacum HOM05D005423 ORTHO05D006223 2.5e-06 56.6 113 34.5
FvH4_2g02450 Fragaria vesca HOM05D005305 ORTHO05D006394 3.2e-06 56.2 106 32.1
Hma1.2p1_0410F.1_g147050 Hydrangea macrophylla HOM05D005423 ORTHO05D006223 3.2e-06 56.2 115 29.6
Sp1g26680 Schrenkiella parvula HOM05D005423 ORTHO05D006223 3.2e-06 56.2 74 39.2
A03p67950 Brassica napus HOM05D007205 ORTHO05D009175 4.2e-06 55.8 87 39.1
BraA01t02676Z Brassica rapa HOM05D007205 ORTHO05D009175 4.2e-06 55.8 87 39.1
CAN.G84.20 Capsicum annuum HOM05D005423 ORTHO05D006223 4.2e-06 55.8 120 35.0
CiPaw.09G149100 Carya illinoinensis HOM05D005423 ORTHO05D006223 4.2e-06 55.8 109 33.0
FAN08G2621 Fragaria x ananassa HOM05D005305 ORTHO05D006394 4.2e-06 55.8 134 30.6
CARHR015700 Cardamine hirsuta HOM05D005305 ORTHO05D006394 5.5e-06 55.5 90 35.6
Sp2g12560 Schrenkiella parvula HOM05D005305 ORTHO05D006394 5.5e-06 55.5 84 38.1
Thecc.06G005400 Theobroma cacao HOM05D005423 ORTHO05D006223 5.5e-06 55.5 107 36.4
Aa31LG6G12020 Aethionema arabicum HOM05D005423 ORTHO05D006223 7.2e-06 55.1 74 35.1
AL1G27270 Arabidopsis lyrata HOM05D005305 ORTHO05D006394 7.2e-06 55.1 163 30.1
AT1G15190 Arabidopsis thaliana HOM05D005305 ORTHO05D006394 7.2e-06 55.1 81 39.5
AT1G30800 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 7.2e-06 55.1 74 36.5
A06p18470 Brassica napus HOM05D005423 ORTHO05D006223 7.2e-06 55.1 74 35.1
Thhalv10015696m.g Eutrema salsugineum HOM05D007205 ORTHO05D009175 7.2e-06 55.1 79 39.2
Prupe.4G102300 Prunus persica HOM05D005423 ORTHO05D006223 7.2e-06 55.1 75 37.3
Aa31LG2G8790 Aethionema arabicum HOM05D005305 ORTHO05D006394 9.4e-06 54.7 81 37.0
C08p24310 Brassica napus HOM05D005423 ORTHO05D006223 9.4e-06 54.7 74 35.1
BolC8t50049H Brassica oleracea HOM05D005423 ORTHO05D006223 9.4e-06 54.7 74 35.1
Duzib160G0446 Durio zibethinus HOM05D005423 ORTHO05D006223 9.4e-06 54.7 76 42.1


User provided reference genes

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