Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G1626 Trochodendron aralioides HOM05D005052 ORTHO05D006226 4.1e-262 907.5 454 100.0
Nn1g06262 Nelumbo nucifera HOM05D005052 ORTHO05D006226 2.3e-217 758.8 458 83.2
Nn5g28565 Nelumbo nucifera HOM05D005052 ORTHO05D006226 5.2e-209 731.1 459 82.8
Dinv40116 Davidia involucrata HOM05D005052 ORTHO05D006226 1.1e-206 723.4 459 80.4
QL06p051082 Quercus lobata HOM05D005052 ORTHO05D006226 4.4e-200 701.4 457 79.2
GSVIVG01018732001 Vitis vinifera HOM05D005052 ORTHO05D006226 5.8e-200 701.0 458 78.4
MBI05_g23388_MAGBIO Magnolia biondii HOM05D005052 ORTHO05D006226 1.1e-198 696.8 460 79.3
CiPaw.07G061100 Carya illinoinensis HOM05D005052 ORTHO05D006226 5.4e-198 694.5 449 81.3
Prupe.7G171600 Prunus persica HOM05D005052 ORTHO05D006226 1.2e-197 693.3 460 77.2
PSO541G6199 Papaver somniferum HOM05D005052 ORTHO05D006226 4.6e-197 691.4 455 79.1
Cpa.g.sc6.286 Carica papaya HOM05D005052 ORTHO05D006226 1.3e-196 689.9 427 80.8
CiPaw.08G130500 Carya illinoinensis HOM05D005052 ORTHO05D006226 3.0e-196 688.7 463 77.8
PSO675G6089 Papaver somniferum HOM05D005052 ORTHO05D006226 8.6e-196 687.2 455 78.7
CANSAT25G2560 Cannabis sativa HOM05D005052 ORTHO05D006226 4.3e-195 684.9 456 77.2
CsaV3_3G000670 Cucumis sativus L. HOM05D005052 ORTHO05D006226 7.3e-195 684.1 457 76.6
vmacro18426 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 9.5e-195 683.7 458 76.9
Cfa007001 Carpinus fangiana HOM05D005052 ORTHO05D006226 1.6e-194 682.9 421 83.4
ClCG10G000590 Citrullus lanatus HOM05D005052 ORTHO05D006226 2.1e-194 682.6 457 77.0
COL.COLO4_22462 Corchorus olitorius HOM05D005052 ORTHO05D006226 2.1e-194 682.6 457 76.6
RcHm_v2.0_Chr2g0099021 Rosa chinensis HOM05D005052 ORTHO05D006226 2.8e-194 682.2 457 75.9
Atru.chr3.855 Acer truncatum HOM05D005052 ORTHO05D006226 3.6e-194 681.8 432 80.1
MD15G1242600 Malus domestica HOM05D005052 ORTHO05D006226 6.2e-194 681.0 460 75.9
MELO3C013755.2 Cucumis melo HOM05D005052 ORTHO05D006226 8.1e-194 680.6 457 76.6
Duzib147G0491 Durio zibethinus HOM05D005052 ORTHO05D006226 8.1e-194 680.6 458 76.0
TWI53G1960 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 4.0e-193 678.3 442 79.0
Sabra05G0090900 Salix brachista HOM05D005052 ORTHO05D006226 1.2e-192 676.8 458 77.5
Ca_24920_v3 Cicer arietinum L. HOM05D005052 ORTHO05D006226 1.5e-192 676.4 464 75.6
Haze_03731 Corylus avellana HOM05D005052 ORTHO05D006226 2.6e-192 675.6 435 80.7
Gohir.D12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 5.8e-192 674.5 388 85.1
arahy.Tifrunner.gnm1.ann1.1KVD1S Arachis hypogaea HOM05D005052 ORTHO05D006226 9.9e-192 673.7 387 86.6
arahy.Tifrunner.gnm1.ann1.PYN71E Arachis hypogaea HOM05D005052 ORTHO05D006226 9.9e-192 673.7 387 86.6
Gohir.A12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 1.7e-191 672.9 385 85.7
Medtr5g022580 Medicago truncatula HOM05D005052 ORTHO05D006226 4.9e-191 671.4 391 85.2
Potri.005G110900 Populus trichocarpa HOM05D005052 ORTHO05D006226 6.4e-191 671.0 458 77.1
ATR0712G043 Amborella trichopoda HOM05D005052 ORTHO05D006226 1.4e-190 669.8 444 76.4
VMungo1215G2918 Vigna mungo HOM05D005052 ORTHO05D006226 1.9e-190 669.5 461 75.7
Cc07_g11060 Coffea canephora HOM05D005052 ORTHO05D006226 2.4e-190 669.1 397 83.4
Sed0003793 Sechium edule HOM05D005052 ORTHO05D006226 2.4e-190 669.1 453 75.7
FAN28G0876 Fragaria x ananassa HOM05D005052 ORTHO05D006226 4.1e-190 668.3 457 74.4
FAN23G2381 Fragaria x ananassa HOM05D005052 ORTHO05D006226 5.4e-190 667.9 454 74.9
Gorai.008G062200 Gossypium raimondii HOM05D005052 ORTHO05D006226 5.4e-190 667.9 389 84.6
Sc03g0003700 Simmondsia chinensis HOM05D005052 ORTHO05D006226 7.1e-190 667.5 457 75.5
Thecc.01G014600 Theobroma cacao HOM05D005052 ORTHO05D006226 1.2e-189 666.8 458 75.5
Actinidia22954 Actinidia chinensis HOM05D005052 ORTHO05D006226 2.1e-189 666.0 370 88.4
FAN19G0738 Fragaria x ananassa HOM05D005052 ORTHO05D006226 2.7e-189 665.6 454 74.2
Lj2g0011110 Lotus japonicus HOM05D005052 ORTHO05D006226 3.5e-189 665.2 467 75.2
Psat2g153160 Pisum sativum HOM05D005052 ORTHO05D006226 6.0e-189 664.5 460 75.0
TPR.G10542 Trifolium pratense HOM05D005052 ORTHO05D006226 6.0e-189 664.5 456 75.4
TWI09G1579 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 7.8e-189 664.1 447 78.1
Rhsim08G0032100 Rhododendron simsii HOM05D005052 ORTHO05D006226 1.7e-188 662.9 388 84.5
Lj4A222T51 Lonicera japonica HOM05D005052 ORTHO05D006226 2.3e-188 662.5 484 72.7
Glyma.11G078700 Glycine max HOM05D005052 ORTHO05D006226 3.9e-188 661.8 390 83.6
Lalb_Chr09g0321611 Lupinus albus HOM05D005052 ORTHO05D006226 3.9e-188 661.8 388 85.3
FvH4_1g11430 Fragaria vesca HOM05D005052 ORTHO05D006226 5.1e-188 661.4 457 73.7
Eucgr.J02467 Eucalyptus grandis HOM05D005052 ORTHO05D006226 1.9e-187 659.4 462 75.5
HanXRQChr13g0424561 Helianthus annuus HOM05D005052 ORTHO05D006226 1.9e-187 659.4 462 74.0
AUR62003338 Chenopodium quinoa HOM05D005052 ORTHO05D006226 3.3e-187 658.7 462 74.9
Lalb_Chr05g0212261 Lupinus albus HOM05D005052 ORTHO05D006226 3.3e-187 658.7 456 75.4
FAN26G3360 Fragaria x ananassa HOM05D005052 ORTHO05D006226 5.6e-187 657.9 470 71.5
AUR62029500 Chenopodium quinoa HOM05D005052 ORTHO05D006226 9.6e-187 657.1 465 74.4
Glyma.01G164300 Glycine max HOM05D005052 ORTHO05D006226 1.2e-186 656.8 390 83.3
Nitab4.5_0008943g0020 Nicotiana tabacum HOM05D005052 ORTHO05D006226 1.2e-186 656.8 417 79.4
Phvul.002G106700 Phaseolus vulgaris HOM05D005052 ORTHO05D006226 2.1e-186 656.0 390 83.3
BcaB04g20124 Brassica carinata HOM05D005052 ORTHO05D006226 2.8e-186 655.6 389 83.5
THA.LOC104821339 Tarenaya hassleriana HOM05D005052 ORTHO05D006226 2.8e-186 655.6 388 83.2
Nitab4.5_0001892g0080 Nicotiana tabacum HOM05D005052 ORTHO05D006226 4.7e-186 654.8 397 81.6
Oeu048477.1 Olea europaea HOM05D005052 ORTHO05D006226 1.1e-185 653.7 466 73.2
Hund16503 Selenicereus undatus HOM05D005052 ORTHO05D006226 1.4e-185 653.3 457 74.6
MSTRG.2728 Avicennia marina HOM05D005052 ORTHO05D006226 1.8e-185 652.9 428 77.3
Gorai.007G192400 Gossypium raimondii HOM05D005052 ORTHO05D006226 1.8e-185 652.9 449 75.1
Peaxi162Scf00328g00523 Petunia axillaris HOM05D005052 ORTHO05D006226 1.8e-185 652.9 392 81.9
Migut.C00533 Erythranthe guttata HOM05D005052 ORTHO05D006226 5.2e-185 651.4 428 77.8
PGR102G0465 Punica granatum HOM05D005052 ORTHO05D006226 5.2e-185 651.4 387 82.2
Aqoxy4G02022 Aquilegia oxysepala HOM05D005052 ORTHO05D006226 1.2e-184 650.2 476 72.3
AL8G45470 Arabidopsis lyrata HOM05D005052 ORTHO05D006226 1.2e-184 650.2 391 82.9
AT5G66120 Arabidopsis thaliana HOM05D005052 ORTHO05D006226 1.2e-184 650.2 391 83.1
ECA240G3065 Erigeron canadensis HOM05D005052 ORTHO05D006226 1.2e-184 650.2 398 81.2
BcaC04g23113 Brassica carinata HOM05D005052 ORTHO05D006226 1.5e-184 649.8 389 83.0
C09p12030 Brassica napus HOM05D005052 ORTHO05D006226 1.5e-184 649.8 389 83.0
BolC9t54093H Brassica oleracea HOM05D005052 ORTHO05D006226 1.5e-184 649.8 389 83.0
SalBow3G4284 Salvia bowleyana HOM05D005052 ORTHO05D006226 3.4e-184 648.7 427 76.3
Os09g0539100 Oryza sativa ssp. japonica HOM05D005052 ORTHO05D006226 4.4e-184 648.3 383 83.8
A09p10150 Brassica napus HOM05D005052 ORTHO05D006226 5.8e-184 647.9 389 82.8
CAN.G1274.31 Capsicum annuum HOM05D005052 ORTHO05D006226 5.8e-184 647.9 416 77.4
CARHR281630 Cardamine hirsuta HOM05D005052 ORTHO05D006226 5.8e-184 647.9 393 81.9
Sp2g30570 Schrenkiella parvula HOM05D005052 ORTHO05D006226 5.8e-184 647.9 391 81.8
BraA09t36659Z Brassica rapa HOM05D005052 ORTHO05D006226 9.9e-184 647.1 389 82.8
SGA_v2.0_scaffold94G28549 Striga asiatica HOM05D005052 ORTHO05D006226 1.7e-183 646.4 453 74.6
Thhalv10004219m.g Eutrema salsugineum HOM05D005052 ORTHO05D006226 2.2e-183 646.0 414 79.2
vmacro22193 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 8.4e-183 644.0 520 66.9
Carub.0008s2837 Capsella rubella HOM05D005052 ORTHO05D006226 1.9e-182 642.9 391 82.1
Gohir.D11G180500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 7.1e-182 641.0 370 85.9
DCAR_022909 Daucus carota HOM05D005052 ORTHO05D006226 9.3e-182 640.6 390 81.3
Zm00001eb103800 Zea mays HOM05D005052 ORTHO05D006226 9.3e-182 640.6 389 81.2
Sopen02g028370 Solanum pennellii HOM05D005052 ORTHO05D006226 1.2e-181 640.2 391 80.6
PGSC0003DMG400003582 Solanum tuberosum HOM05D005052 ORTHO05D006226 2.1e-181 639.4 414 76.8
Solyc02g083590.3 Solanum lycopersicum HOM05D005052 ORTHO05D006226 2.7e-181 639.0 391 80.6
Aa31LG1G14600 Aethionema arabicum HOM05D005052 ORTHO05D006226 3.5e-181 638.6 367 85.0
HPP92_025914 Vanilla planifolia HOM05D005052 ORTHO05D006226 8.1e-178 627.5 391 76.7
Gohir.A11G173500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 4.0e-177 625.2 379 82.3
HPP92_025909 Vanilla planifolia HOM05D005052 ORTHO05D006226 4.0e-177 625.2 386 77.5
Pp3c13_24150 Physcomitrium patens HOM05D005052 ORTHO05D006226 2.3e-172 609.4 386 76.4
Ciclev10025711m.g Citrus clementina HOM05D005052 ORTHO05D006226 1.3e-170 603.6 442 71.5
Mapoly0031s0094 Marchantia polymorpha HOM05D005052 ORTHO05D006226 1.5e-168 596.7 438 67.4
CSS0012363 Camellia sinensis var. sinensis HOM05D005052 ORTHO05D006226 2.2e-167 592.8 329 88.8
SMO228G0049 Selaginella moellendorffii HOM05D005052 ORTHO05D006226 2.2e-167 592.8 365 78.1
AagrBONN_evm.TU.Sc2ySwM_340.387 Anthoceros agrestis HOM05D005052 ORTHO05D006226 2.9e-167 592.4 390 73.6
Zm00001eb331970 Zea mays HOM05D005052 ORTHO05D006226 3.8e-159 565.5 353 80.2
Actinidia28717 Actinidia chinensis HOM05D005052 ORTHO05D006226 3.0e-156 555.8 456 67.1
Lsat_1_v5_gn_3_125660 Lactuca sativa HOM05D005052 ORTHO05D006226 1.9e-155 553.1 367 76.8
CBR_g10969 Chara braunii HOM05D005052 ORTHO05D006226 5.7e-155 551.6 391 69.6
DCAR_004732 Daucus carota HOM05D005052 ORTHO05D006226 1.7e-151 540.0 398 68.6
Actinidia17421 Actinidia chinensis HOM05D005052 ORTHO05D006226 9.7e-147 524.2 288 88.9
EL10Ac6g15523 Beta vulgaris HOM05D005052 ORTHO05D006226 3.7e-146 522.3 456 61.6
Cre08.g368950 Chlamydomonas reinhardtii HOM05D005052 ORTHO05D006226 1.0e-143 514.2 362 68.8
CDE04G1415 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 1.9e-142 510.0 288 86.1
MCO01G625 Micromonas commoda HOM05D005052 ORTHO05D006226 5.7e-139 498.4 402 61.4
Manes.02G107200 Manihot esculenta HOM05D005052 ORTHO05D006226 9.7e-139 497.7 347 74.9
Hma1.2p1_0315F.1_g122330 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 4.2e-134 482.3 372 68.5
PRCOL_00000314 Prasinoderma coloniale HOM05D005052 ORTHO05D006226 1.1e-131 474.2 363 63.4
Ah.03g149130 Amaranthus hybridus HOM05D005052 ORTHO05D006226 2.2e-130 469.9 347 72.6
SEGI_14262 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 5.9e-120 435.3 281 76.2
Dinv33661 Davidia involucrata HOM05D005052 ORTHO05D006226 8.0e-117 424.9 234 88.5
CDE02G2775 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 7.0e-113 411.8 306 69.6
Hma1.2p1_2620F.1_g325580 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 1.4e-108 397.5 442 54.3
SEGI_08539 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 4.9e-98 362.5 224 76.8
CDE02G1558 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 7.8e-88 328.6 257 67.3
Lsat_1_v5_gn_0_46241 Lactuca sativa HOM05D005052 ORTHO05D006226 3.3e-78 296.6 319 46.7
SGA_v2.0_scaffold273G46395 Striga asiatica HOM05D005052 ORTHO05D006226 4.0e-76 289.7 189 69.8
TPR.G6592 Trifolium pratense HOM05D005052 ORTHO05D006226 2.4e-73 280.4 274 57.7
RcHm_v2.0_Chr2g0099011 Rosa chinensis HOM05D005052 ORTHO05D006226 3.5e-72 276.6 247 59.5
Dinv33662 Davidia involucrata HOM05D005052 ORTHO05D006226 4.3e-70 269.6 208 69.7
unitig_699.g19702 Utricularia gibba HOM05D005052 ORTHO05D006226 2.1e-69 267.3 162 81.5
Haze_27270 Corylus avellana HOM05D005052 ORTHO05D006226 1.9e-65 254.2 355 42.3
Cfa024476 Carpinus fangiana HOM05D003566 ORTHO05D126353 2.3e-55 220.7 367 39.8
unitig_699.g19703 Utricularia gibba HOM05D005052 ORTHO05D006226 3.5e-48 196.8 175 62.9
Rhsim07G0143100 Rhododendron simsii HOM05D005052 ORTHO05D006226 9.6e-46 188.7 184 58.7
SEGI_40904 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 8.4e-42 175.6 114 72.8
Ah.03g149140 Amaranthus hybridus HOM05D000441 ORTHO05D000340 2.6e-27 127.5 78 78.2
SEGI_17140 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 1.6e-24 118.2 84 65.5
SEGI_34573 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 1.6e-24 118.2 84 65.5
MD02G1126200 Malus domestica HOM05D005052 ORTHO05D006226 4.7e-24 116.7 130 53.1
MD14G1099300 Malus domestica HOM05D005052 ORTHO05D006226 4.7e-24 116.7 130 53.1
CDE04G1456 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 3.7e-21 107.1 77 70.1
Rhsim07G0135500 Rhododendron simsii HOM05D005052 ORTHO05D006226 3.7e-21 107.1 67 77.6
DCAR_004721 Daucus carota HOM05D005052 ORTHO05D006226 7.0e-20 102.8 114 50.9
SEGI_22853 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 7.2e-17 92.8 70 64.3
CSS0040013 Camellia sinensis var. sinensis HOM05D005052 ORTHO05D006226 6.3e-13 79.7 122 45.1
Rhsim07G0135600 Rhododendron simsii HOM05D005052 ORTHO05D339393 3.2e-09 67.4 56 60.7


User provided reference genes

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