Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G1539 Trochodendron aralioides HOM05D005558 ORTHO05D006832 6.3e-108 394.0 189 100.0
Nn6g31548 Nelumbo nucifera HOM05D005558 ORTHO05D006832 3.8e-73 278.5 160 81.9
Cfa014170 Carpinus fangiana HOM05D005558 ORTHO05D006832 8.0e-71 270.8 162 82.1
CiPaw.08G079200 Carya illinoinensis HOM05D005558 ORTHO05D006832 1.2e-69 266.9 159 81.1
Rhsim06G0000500 Rhododendron simsii HOM05D005558 ORTHO05D006832 7.5e-69 264.2 179 76.5
Nitab4.5_0003423g0040 Nicotiana tabacum HOM05D005558 ORTHO05D006832 4.9e-68 261.5 152 80.3
CAN.G208.43 Capsicum annuum HOM05D005558 ORTHO05D006832 8.3e-68 260.8 153 80.4
Sopen12g031670 Solanum pennellii HOM05D005558 ORTHO05D006832 8.3e-68 260.8 152 80.3
Hma1.2p1_0914F.1_g236230 Hydrangea macrophylla HOM05D005558 ORTHO05D006832 1.4e-67 260.0 165 78.2
Solyc12g095770.2 Solanum lycopersicum HOM05D005558 ORTHO05D006832 1.9e-67 259.6 152 80.3
CiPaw.07G129900 Carya illinoinensis HOM05D005558 ORTHO05D006832 5.4e-67 258.1 164 78.0
CSS0024776 Camellia sinensis var. sinensis HOM05D005558 ORTHO05D006832 7.0e-67 257.7 152 81.6
QL02p016334 Quercus lobata HOM05D005558 ORTHO05D006832 1.2e-66 256.9 165 77.0
Lsat_1_v5_gn_2_2740 Lactuca sativa HOM05D005558 ORTHO05D006832 7.8e-66 254.2 171 76.6
Peaxi162Scf00064g01430 Petunia axillaris HOM05D005558 ORTHO05D006832 1.0e-65 253.8 151 79.5
Atru.chr13.17 Acer truncatum HOM05D005558 ORTHO05D006832 3.9e-65 251.9 183 72.1
HanXRQChr14g0427511 Helianthus annuus HOM05D005558 ORTHO05D006832 1.5e-64 250.0 147 81.6
Actinidia15539 Actinidia chinensis HOM05D005558 ORTHO05D006832 1.9e-64 249.6 127 89.8
Prupe.5G000800 Prunus persica HOM05D005558 ORTHO05D006832 1.2e-63 246.9 155 75.5
PSO170G6225 Papaver somniferum HOM05D005558 ORTHO05D006832 1.6e-63 246.5 161 74.5
Cc10_g00070 Coffea canephora HOM05D005558 ORTHO05D006832 2.8e-63 245.7 120 94.2
GSVIVG01013466001 Vitis vinifera HOM05D005558 ORTHO05D006832 2.8e-63 245.7 123 90.2
RcHm_v2.0_Chr7g0217691 Rosa chinensis HOM05D005558 ORTHO05D006832 6.2e-63 244.6 163 73.6
TWI12G1391 Tripterygium wilfordii HOM05D005558 ORTHO05D006832 8.0e-63 244.2 164 75.0
Sabra02G0001000 Salix brachista HOM05D005558 ORTHO05D006832 1.4e-62 243.4 129 87.6
Dinv05517 Davidia involucrata HOM05D005558 ORTHO05D006832 1.8e-62 243.0 150 81.3
PSO017G1036 Papaver somniferum HOM05D005558 ORTHO05D006832 1.8e-62 243.0 161 73.9
Thecc.08G097300 Theobroma cacao HOM05D005558 ORTHO05D006832 2.3e-62 242.7 158 73.4
COL.COLO4_12262 Corchorus olitorius HOM05D005558 ORTHO05D006832 3.1e-62 242.3 159 74.2
MSTRG.24533 Avicennia marina HOM05D005558 ORTHO05D006832 4.0e-62 241.9 120 90.8
CANSAT25G0089 Cannabis sativa HOM05D005558 ORTHO05D006832 4.0e-62 241.9 158 73.4
Ciclev10002303m.g Citrus clementina HOM05D005558 ORTHO05D006832 4.0e-62 241.9 168 73.8
Gohir.A05G177400 Gossypium hirsutum HOM05D005558 ORTHO05D006832 5.2e-62 241.5 159 74.8
Gorai.009G185800 Gossypium raimondii HOM05D005558 ORTHO05D006832 5.2e-62 241.5 159 74.8
PGR083G0867 Punica granatum HOM05D005558 ORTHO05D006832 5.2e-62 241.5 162 74.1
BcaB07g32099 Brassica carinata HOM05D005558 ORTHO05D006832 6.8e-62 241.1 158 72.8
Manes.18G000600 Manihot esculenta HOM05D005558 ORTHO05D006832 6.8e-62 241.1 147 78.9
BcaB03g12837 Brassica carinata HOM05D005558 ORTHO05D006832 1.5e-61 240.0 167 72.5
Lj4g0004166 Lotus japonicus HOM05D005558 ORTHO05D006832 1.5e-61 240.0 146 80.8
Sc17g0004140 Simmondsia chinensis HOM05D005558 ORTHO05D006832 1.5e-61 240.0 161 72.7
BraA06t24816Z Brassica rapa HOM05D005558 ORTHO05D006832 2.0e-61 239.6 158 73.4
Psat7g129880 Pisum sativum HOM05D005558 ORTHO05D006832 2.0e-61 239.6 162 77.2
Eucgr.F01955 Eucalyptus grandis HOM05D005558 ORTHO05D006832 2.6e-61 239.2 190 65.3
Potri.002G001500 Populus trichocarpa HOM05D005558 ORTHO05D006832 2.6e-61 239.2 126 88.1
arahy.Tifrunner.gnm1.ann1.09GV4T Arachis hypogaea HOM05D005558 ORTHO05D006832 3.4e-61 238.8 158 76.6
arahy.Tifrunner.gnm1.ann1.H4MLSW Arachis hypogaea HOM05D005558 ORTHO05D006832 3.4e-61 238.8 158 76.6
Carub.0001s2052 Capsella rubella HOM05D005558 ORTHO05D006832 3.4e-61 238.8 161 72.7
Duzib116G0928 Durio zibethinus HOM05D005558 ORTHO05D006832 3.4e-61 238.8 160 73.1
Glyma.07G221200 Glycine max HOM05D005558 ORTHO05D006832 3.4e-61 238.8 159 74.2
MD07G1016000 Malus domestica HOM05D005558 ORTHO05D006832 3.4e-61 238.8 123 87.0
Medtr4g084120 Medicago truncatula HOM05D005558 ORTHO05D006832 3.4e-61 238.8 159 78.0
Hund05339 Selenicereus undatus HOM05D005558 ORTHO05D006832 3.4e-61 238.8 160 71.9
PGSC0003DMG400029397 Solanum tuberosum HOM05D005558 ORTHO05D006832 3.4e-61 238.8 122 87.7
Gohir.D05G180800 Gossypium hirsutum HOM05D005558 ORTHO05D006832 5.8e-61 238.0 159 73.6
MD06G1057400 Malus domestica HOM05D005558 ORTHO05D006832 5.8e-61 238.0 119 89.9
ClCG11G019260 Citrullus lanatus HOM05D005558 ORTHO05D006832 7.5e-61 237.7 162 69.1
EL10Ac7g17248 Beta vulgaris HOM05D005558 ORTHO05D006832 9.8e-61 237.3 160 73.1
BcaC05g26014 Brassica carinata HOM05D005558 ORTHO05D006832 9.8e-61 237.3 158 71.5
Ca_18758_v3 Cicer arietinum L. HOM05D005558 ORTHO05D006832 9.8e-61 237.3 145 79.3
A06p17130 Brassica napus HOM05D005558 ORTHO05D006832 1.3e-60 236.9 158 72.8
Sp1g18730 Schrenkiella parvula HOM05D005558 ORTHO05D006832 1.3e-60 236.9 164 70.7
TPR.G20977 Trifolium pratense HOM05D005558 ORTHO05D006832 1.7e-60 236.5 162 75.9
CsaV3_4G037850 Cucumis sativus L. HOM05D005558 ORTHO05D006832 2.2e-60 236.1 164 69.5
FAN04G1408 Fragaria x ananassa HOM05D005558 ORTHO05D006832 2.2e-60 236.1 160 71.2
Glyma.15G161100 Glycine max HOM05D005558 ORTHO05D006832 2.2e-60 236.1 149 75.2
AUR62041000 Chenopodium quinoa HOM05D005558 ORTHO05D006832 2.9e-60 235.7 159 72.3
C08p20580 Brassica napus HOM05D005558 ORTHO05D006832 3.7e-60 235.3 161 70.2
Lalb_Chr05g0219661 Lupinus albus HOM05D005558 ORTHO05D006832 3.7e-60 235.3 120 90.8
FAN08G1374 Fragaria x ananassa HOM05D005558 ORTHO05D006832 6.4e-60 234.6 160 71.2
arahy.Tifrunner.gnm1.ann1.8D2970 Arachis hypogaea HOM05D005558 ORTHO05D006832 8.3e-60 234.2 142 76.8
arahy.Tifrunner.gnm1.ann1.GVHP98 Arachis hypogaea HOM05D005558 ORTHO05D006832 8.3e-60 234.2 142 76.8
BcaC07g39074 Brassica carinata HOM05D005558 ORTHO05D006832 1.1e-59 233.8 160 70.0
BolC8t49687H Brassica oleracea HOM05D005558 ORTHO05D006832 1.1e-59 233.8 160 70.0
Aqoxy5G00965 Aquilegia oxysepala HOM05D005558 ORTHO05D006832 1.4e-59 233.4 122 85.2
THA.LOC104813721 Tarenaya hassleriana HOM05D005558 ORTHO05D006832 1.9e-59 233.0 145 75.9
CARHR021510 Cardamine hirsuta HOM05D005558 ORTHO05D006832 2.4e-59 232.6 158 69.0
Phvul.002G097800 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 2.4e-59 232.6 132 82.6
AL1G34110 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 3.2e-59 232.3 161 71.4
FvH4_5g26780 Fragaria vesca HOM05D005558 ORTHO05D006832 3.2e-59 232.3 160 70.6
FAN18G4437 Fragaria x ananassa HOM05D005558 ORTHO05D006832 3.2e-59 232.3 160 70.6
Thhalv10008709m.g Eutrema salsugineum HOM05D005558 ORTHO05D006832 4.1e-59 231.9 159 69.8
A08p29100 Brassica napus HOM05D005558 ORTHO05D006832 7.0e-59 231.1 159 69.8
Migut.N03003 Erythranthe guttata HOM05D005558 ORTHO05D006832 7.0e-59 231.1 120 85.8
BraA08t34846Z Brassica rapa HOM05D005558 ORTHO05D006832 9.2e-59 230.7 159 69.8
Sed0017561 Sechium edule HOM05D005558 ORTHO05D006832 1.6e-58 229.9 127 81.1
Os02g0187500 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 7.8e-58 227.6 118 88.1
Ah.08g212310 Amaranthus hybridus HOM05D005558 ORTHO05D006832 1.7e-57 226.5 156 71.2
HPP92_021698 Vanilla planifolia HOM05D005558 ORTHO05D006832 2.3e-57 226.1 118 84.7
Lalb_Chr15g0083971 Lupinus albus HOM05D005558 ORTHO05D006832 3.9e-57 225.3 156 71.8
ATR0605G185 Amborella trichopoda HOM05D005558 ORTHO05D006832 8.6e-57 224.2 158 69.0
AT1G21065 Arabidopsis thaliana HOM05D005558 ORTHO05D006832 1.1e-56 223.8 150 72.7
HPP92_017798 Vanilla planifolia HOM05D005558 ORTHO05D006832 4.3e-56 221.9 162 67.3
Zm00001eb234660 Zea mays HOM05D005558 ORTHO05D006832 1.1e-54 217.2 118 81.4
Zm00001eb387340 Zea mays HOM05D005558 ORTHO05D006832 1.8e-54 216.5 129 76.0
Pp3c1_31360 Physcomitrium patens HOM05D005558 ORTHO05D006832 5.2e-54 214.9 128 75.8
SGA_v2.0_scaffold19G08925 Striga asiatica HOM05D005558 ORTHO05D006832 6.8e-54 214.5 120 80.0
Phvul.009G240200 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 2.0e-53 213.0 131 77.1
Mapoly0002s0034 Marchantia polymorpha HOM05D005558 ORTHO05D006832 2.6e-53 212.6 118 80.5
SGA_v2.0_scaffold25G11031 Striga asiatica HOM05D005558 ORTHO05D006832 2.6e-53 212.6 136 72.8
SEGI_40156 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 3.4e-53 212.2 128 75.8
SMO259G0018 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 2.9e-52 209.1 122 75.4
VMungo0251G0776 Vigna mungo HOM05D005558 ORTHO05D006832 3.5e-50 202.2 127 76.4
Lj4C814G4 Lonicera japonica HOM05D005558 ORTHO05D006832 8.6e-49 197.6 129 74.4
Nitab4.5_0001309g0160 Nicotiana tabacum HOM05D005558 ORTHO05D006832 1.9e-48 196.4 104 87.5
ECA238G0376 Erigeron canadensis HOM05D005558 ORTHO05D006832 2.1e-47 193.0 143 67.1
Cre17.g739300 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 4.4e-45 185.3 118 71.2
MELO3C017079.2 Cucumis melo HOM05D005558 ORTHO05D006832 4.4e-45 185.3 95 87.4
TAR376G0283 Trochodendron aralioides HOM05D005558 ORTHO05D006832 5.8e-45 184.9 94 91.5
BolC5t30678H Brassica oleracea HOM05D000370 ORTHO05D006832 1.3e-44 183.7 116 75.9
vmacro21735 Vaccinium macrocarpon HOM05D005558 ORTHO05D006832 1.2e-42 177.2 148 66.2
Prupe.5G000700 Prunus persica HOM05D005558 ORTHO05D006832 6.0e-42 174.9 96 83.3
Oeu000735.2 Olea europaea HOM05D005558 ORTHO05D006832 1.9e-40 169.9 92 83.7
Haze_22894 Corylus avellana HOM05D005558 ORTHO05D006832 1.3e-33 147.1 162 51.2
Os06g0638200 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 1.9e-32 143.3 75 85.3
SMO203G0115 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 1.6e-31 140.2 123 52.8
CBR_g570 Chara braunii HOM05D005558 ORTHO05D006832 6.2e-31 138.3 85 71.8
Pp3c2_25680 Physcomitrium patens HOM05D005558 ORTHO05D006832 2.4e-30 136.3 143 47.6
SEGI_39286 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 9.0e-30 134.4 127 52.8
CDE04G3086 Ceratophyllum demersum HOM05D000433 ORTHO05D000443 7.6e-29 131.3 160 45.0
AL8G17720 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 9.9e-29 131.0 72 84.7
Mapoly0065s0101 Marchantia polymorpha HOM05D005558 ORTHO05D006832 3.8e-28 129.0 118 54.2
Peaxi162Scf00064g01422 Petunia axillaris HOM05D005558 ORTHO05D006832 6.4e-28 128.3 92 68.5
Cre01.g043100 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 5.4e-27 125.2 123 50.4
AL5G16180 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 9.3e-27 124.4 70 82.9
Cfa023908 Carpinus fangiana HOM05D005558 ORTHO05D006832 1.2e-26 124.0 118 48.3
HPP92_021704 Vanilla planifolia HOM05D005558 ORTHO05D006832 1.6e-23 113.6 119 48.7
MCO09G054 Micromonas commoda HOM05D005558 ORTHO05D006832 6.4e-20 101.7 124 43.5
SalBow6G6347 Salvia bowleyana HOM05D005558 ORTHO05D006832 9.3e-19 97.8 120 46.7
AagrBONN_evm.TU.Sc2ySwM_344.2923 Anthoceros agrestis HOM05D005558 ORTHO05D006832 8.2e-15 84.7 78 53.8
DCAR_022964 Daucus carota HOM05D005558 ORTHO05D006832 2.9e-12 76.3 84 51.2
C05p19780 Brassica napus HOM05D005558 ORTHO05D006832 1.9e-11 73.6 35 88.6
Cpa.g.sc36.94 Carica papaya HOM05D005558 ORTHO05D006832 2.5e-11 73.2 120 41.7
Cpa.g.sc36.93 Carica papaya HOM05D005558 ORTHO05D006832 2.1e-10 70.1 31 93.5
PRCOL_00001425 Prasinoderma coloniale HOM05D005558 ORTHO05D006832 2.3e-09 66.6 114 32.5
Aa31LG7G5210 Aethionema arabicum HOM05D005558 ORTHO05D006832 5.7e-08 62.0 64 50.0
Cre09.g396850 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D034498 1.6e-07 60.5 119 31.9
BcaC07g39073 Brassica carinata HOM05D005558 ORTHO05D006832 4.8e-07 58.9 29 86.2
MCO09G751 Micromonas commoda HOM05D005558 ORTHO05D034498 1.1e-06 57.8 121 29.8
PRCOL_00001511 Prasinoderma coloniale HOM05D005558 ORTHO05D034498 4.1e-06 55.8 138 27.5


User provided reference genes

Program Settings