Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G1413 Trochodendron aralioides HOM05D007736 ORTHO05D009783 4.8e-73 277.7 137 100.0
TAR625G1059 Trochodendron aralioides HOM05D007736 ORTHO05D009783 7.9e-60 233.8 130 86.9
Nn1g06123 Nelumbo nucifera HOM05D007736 ORTHO05D009783 1.5e-42 176.4 144 63.2
ATR0772G143 Amborella trichopoda HOM05D007736 ORTHO05D009783 8.0e-28 127.5 144 50.0
Medtr2g008130 Medicago truncatula HOM05D007736 ORTHO05D009783 2.6e-26 122.5 113 53.1
Dinv24237 Davidia involucrata HOM05D007736 ORTHO05D009783 1.3e-25 120.2 137 47.4
Dinv19331 Davidia involucrata HOM05D007736 ORTHO05D009783 1.7e-25 119.8 142 47.2
Ca_00110_v3 Cicer arietinum L. HOM05D007736 ORTHO05D009783 4.8e-25 118.2 96 56.2
Lj5P244T47 Lonicera japonica HOM05D007736 ORTHO05D009783 4.8e-25 118.2 118 54.2
Sed0025125 Sechium edule HOM05D007736 ORTHO05D009783 8.2e-25 117.5 91 54.9
VMungo0540G1970 Vigna mungo HOM05D007736 ORTHO05D009783 1.1e-24 117.1 96 59.4
MELO3C028798.2 Cucumis melo HOM05D007736 ORTHO05D009783 1.4e-24 116.7 80 61.2
Sed0013332 Sechium edule HOM05D007736 ORTHO05D009783 1.4e-24 116.7 83 57.8
ClCG09G014560 Citrullus lanatus HOM05D007736 ORTHO05D009783 1.8e-24 116.3 79 62.0
Actinidia38961 Actinidia chinensis HOM05D007736 ORTHO05D009783 2.4e-24 115.9 124 47.6
Haze_10792 Corylus avellana HOM05D007736 ORTHO05D009783 2.4e-24 115.9 83 66.3
Eucgr.I02697 Eucalyptus grandis HOM05D007736 ORTHO05D009783 2.4e-24 115.9 82 63.4
Phvul.006G209200 Phaseolus vulgaris HOM05D007736 ORTHO05D009783 3.1e-24 115.5 111 50.5
CsaV3_7G022310 Cucumis sativus L. HOM05D007736 ORTHO05D009783 5.3e-24 114.8 80 60.0
Cfa021836 Carpinus fangiana HOM05D007736 ORTHO05D009783 2.6e-23 112.5 83 63.9
Glyma.15G050700 Glycine max HOM05D007736 ORTHO05D009783 2.6e-23 112.5 96 56.2
Manes.04G057900 Manihot esculenta HOM05D007736 ORTHO05D009783 4.5e-23 111.7 82 59.8
Psat1g218640 Pisum sativum HOM05D007736 ORTHO05D009783 1.3e-22 110.2 96 51.0
PGR142G3153 Punica granatum HOM05D007736 ORTHO05D009783 1.3e-22 110.2 81 59.3
vmacro01801 Vaccinium macrocarpon HOM05D007736 ORTHO05D009783 1.3e-22 110.2 110 51.8
arahy.Tifrunner.gnm1.ann1.40XV2D Arachis hypogaea HOM05D007736 ORTHO05D009783 2.9e-22 109.0 83 56.6
arahy.Tifrunner.gnm1.ann1.JZ71MD Arachis hypogaea HOM05D007736 ORTHO05D009783 2.9e-22 109.0 102 49.0
COL.COLO4_20877 Corchorus olitorius HOM05D007736 ORTHO05D009783 3.8e-22 108.6 111 46.8
Lsat_1_v5_gn_5_106541 Lactuca sativa HOM05D007736 ORTHO05D009783 5.0e-22 108.2 123 47.2
Prupe.6G356600 Prunus persica HOM05D007736 ORTHO05D009783 5.0e-22 108.2 94 54.3
CiPaw.05G040000 Carya illinoinensis HOM05D007736 ORTHO05D009783 1.1e-21 107.1 83 60.2
Glyma.08G181600 Glycine max HOM05D007736 ORTHO05D009783 1.1e-21 107.1 96 55.2
TWI14G1332 Tripterygium wilfordii HOM05D007736 ORTHO05D009783 1.1e-21 107.1 115 46.1
Ciclev10028677m.g Citrus clementina HOM05D007736 ORTHO05D009783 3.2e-21 105.5 82 56.1
Thecc.02G144400 Theobroma cacao HOM05D007736 ORTHO05D009783 3.2e-21 105.5 116 47.4
Actinidia00233 Actinidia chinensis HOM05D007736 ORTHO05D009783 7.2e-21 104.4 128 47.7
MD04G1236600 Malus domestica HOM05D007736 ORTHO05D009783 7.2e-21 104.4 87 57.5
Lj6g0003665 Lotus japonicus HOM05D007736 ORTHO05D009783 9.4e-21 104.0 83 55.4
Rhsim11G0133400 Rhododendron simsii HOM05D007736 ORTHO05D009783 9.4e-21 104.0 114 46.5
Aqoxy5G02135 Aquilegia oxysepala HOM05D007736 ORTHO05D009783 1.6e-20 103.2 137 43.1
Aqoxy4G00650 Aquilegia oxysepala HOM05D007736 ORTHO05D009783 2.7e-20 102.4 137 43.1
MD12G1255900 Malus domestica HOM05D007736 ORTHO05D009783 3.6e-20 102.1 87 56.3
Prupe.7G056800 Prunus persica HOM05D007736 ORTHO05D009783 6.1e-20 101.3 92 50.0
Cpa.g.sc2.48 Carica papaya HOM05D007736 ORTHO05D009783 8.0e-20 100.9 129 42.6
Cc02_g21990 Coffea canephora HOM05D007736 ORTHO05D009783 3.0e-19 99.0 115 47.0
HanXRQChr16g0514111 Helianthus annuus HOM05D007736 ORTHO05D009783 3.0e-19 99.0 107 49.5
Potri.012G020400 Populus trichocarpa HOM05D007736 ORTHO05D009783 4.0e-19 98.6 83 51.8
Sabra12G0012700 Salix brachista HOM05D007736 ORTHO05D009783 1.5e-18 96.7 83 49.4
Sabra15G0006300 Salix brachista HOM05D007736 ORTHO05D009783 1.5e-18 96.7 83 51.8
FAN09G0667 Fragaria x ananassa HOM05D007736 ORTHO05D009783 2.0e-18 96.3 80 52.5
Potri.015G008200 Populus trichocarpa HOM05D007736 ORTHO05D009783 2.0e-18 96.3 83 51.8
CDE02G1981 Ceratophyllum demersum HOM05D007736 ORTHO05D009783 2.6e-18 95.9 95 52.6
EL10Ac4g09677 Beta vulgaris HOM05D007736 ORTHO05D009783 3.4e-18 95.5 106 45.3
MSTRG.5252 Avicennia marina HOM05D007736 ORTHO05D009783 5.7e-18 94.7 94 48.9
QL11p018598 Quercus lobata HOM05D007736 ORTHO05D009783 5.7e-18 94.7 83 53.0
FvH4_6g01062 Fragaria vesca HOM05D000868 ORTHO05D000711 1.7e-17 93.2 82 51.2
FAN02G1431 Fragaria x ananassa HOM05D007736 ORTHO05D009783 1.7e-17 93.2 82 51.2
FAN14G5928 Fragaria x ananassa HOM05D007736 ORTHO05D009783 1.7e-17 93.2 82 51.2
CAN.G523.104 Capsicum annuum HOM05D007736 ORTHO05D009783 2.2e-17 92.8 97 47.4
FAN05G0537 Fragaria x ananassa HOM05D007736 ORTHO05D009783 2.2e-17 92.8 82 51.2
Nitab4.5_0000249g0440 Nicotiana tabacum HOM05D007736 ORTHO05D009783 4.8e-17 91.7 97 45.4
Sc16g0009620 Simmondsia chinensis HOM05D007736 ORTHO05D009783 4.8e-17 91.7 99 46.5
unitig_26.g9583 Utricularia gibba HOM05D007736 ORTHO05D009783 8.3e-17 90.9 95 48.4
Nitab4.5_0014357g0010 Nicotiana tabacum HOM05D007736 ORTHO05D009783 1.1e-16 90.5 97 45.4
Solyc01g104790.4 Solanum lycopersicum HOM05D007736 ORTHO05D009783 1.1e-16 90.5 97 46.4
AUR62006887 Chenopodium quinoa HOM05D007736 ORTHO05D009783 1.4e-16 90.1 97 48.5
MSTRG.27826 Avicennia marina HOM05D007736 ORTHO05D009783 1.8e-16 89.7 125 36.8
FAN05G0165 Fragaria x ananassa HOM05D007736 ORTHO05D009783 2.4e-16 89.4 82 50.0
Ah.06g188730 Amaranthus hybridus HOM05D007736 ORTHO05D009783 3.1e-16 89.0 101 45.5
PGSC0003DMG400029771 Solanum tuberosum HOM05D007736 ORTHO05D009783 3.1e-16 89.0 97 46.4
AUR62000538 Chenopodium quinoa HOM05D007736 ORTHO05D009783 4.1e-16 88.6 105 47.6
DCAR_021830 Daucus carota HOM05D007736 ORTHO05D009783 9.1e-16 87.4 139 41.0
RcHm_v2.0_Chr3g0448601 Rosa chinensis HOM05D007736 ORTHO05D009783 9.1e-16 87.4 81 49.4
Sopen01g047310 Solanum pennellii HOM05D007736 ORTHO05D009783 1.2e-15 87.0 85 49.4
Hund21796 Selenicereus undatus HOM05D007736 ORTHO05D009783 1.0e-14 84.0 97 39.2
TPR.G19753 Trifolium pratense HOM05D007736 ORTHO05D009783 2.9e-14 82.4 77 48.1
Migut.N01016 Erythranthe guttata HOM05D007736 ORTHO05D009783 1.5e-13 80.1 82 43.9
Lalb_Chr20g0123201 Lupinus albus HOM05D007736 ORTHO05D009783 2.5e-13 79.3 100 47.0
ECA234G2384 Erigeron canadensis HOM05D007736 ORTHO05D009783 1.2e-12 77.0 93 45.2
Atru.chr6.1122 Acer truncatum HOM05D007736 ORTHO05D009783 4.7e-12 75.1 54 59.3
SEGI_00896 Sequoiadendron giganteum HOM05D015824 ORTHO05D017311 8.0e-12 74.3 131 35.9
SGA_v2.0_scaffold45G17286 Striga asiatica HOM05D007736 ORTHO05D009783 2.6e-10 69.3 123 37.4
HanXRQChr10g0289121 Helianthus annuus HOM05D007736 ORTHO05D009783 1.4e-08 63.5 112 37.5
Zm00001eb382360 Zea mays HOM05D007736 ORTHO05D009783 1.4e-08 63.5 86 39.5
Os06g0468400 Oryza sativa ssp. japonica HOM05D007736 ORTHO05D009783 7.7e-07 57.8 81 39.5


User provided reference genes

Program Settings