Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G1372 Trochodendron aralioides HOM05D004245 ORTHO05D004783 5.2e-125 451.1 226 100.0
TAR365G0431 Trochodendron aralioides HOM05D004245 ORTHO05D004783 2.1e-86 322.8 177 93.8
Dinv36073 Davidia involucrata HOM05D004245 ORTHO05D004783 5.6e-79 298.1 226 72.6
QL02p008410 Quercus lobata HOM05D004245 ORTHO05D004783 7.3e-79 297.7 231 71.9
QL02p008145 Quercus lobata HOM05D004245 ORTHO05D004783 8.1e-78 294.3 231 70.6
COL.COLO4_26330 Corchorus olitorius HOM05D004245 ORTHO05D004783 1.1e-77 293.9 231 70.1
GSVIVG01009696001 Vitis vinifera HOM05D004245 ORTHO05D004783 6.9e-77 291.2 177 86.4
Nn5g29570 Nelumbo nucifera HOM05D004245 ORTHO05D004783 2.6e-76 289.3 184 80.4
Duzib116G0455 Durio zibethinus HOM05D004245 ORTHO05D004783 3.4e-76 288.9 197 77.2
GSVIVG01037336001 Vitis vinifera HOM05D004245 ORTHO05D004783 5.8e-76 288.1 177 85.3
Thecc.08G025300 Theobroma cacao HOM05D004245 ORTHO05D004783 7.6e-76 287.7 182 80.2
Oeu029863.1 Olea europaea HOM05D004245 ORTHO05D004783 1.3e-75 287.0 233 69.1
Oeu049959.1 Olea europaea HOM05D004245 ORTHO05D004783 1.7e-75 286.6 232 68.5
Oeu049960.1 Olea europaea HOM05D004245 ORTHO05D004783 1.7e-75 286.6 232 68.5
Gohir.A05G194800 Gossypium hirsutum HOM05D004245 ORTHO05D004783 3.8e-75 285.4 230 68.7
TWI56G0048 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 1.1e-74 283.9 233 67.8
Gohir.D05G198000 Gossypium hirsutum HOM05D004245 ORTHO05D004783 1.4e-74 283.5 230 67.8
Nn1g05030 Nelumbo nucifera HOM05D004245 ORTHO05D004783 1.4e-74 283.5 227 68.7
Ciclev10002428m.g Citrus clementina HOM05D004245 ORTHO05D004783 3.2e-74 282.3 227 67.8
Gorai.009G203100 Gossypium raimondii HOM05D004245 ORTHO05D004783 9.3e-74 280.8 230 67.0
Prupe.1G380600 Prunus persica HOM05D004245 ORTHO05D004783 1.6e-73 280.0 212 71.2
Potri.002G261900 Populus trichocarpa HOM05D004245 ORTHO05D004783 2.7e-73 279.3 227 68.3
Lalb_Chr10g0103901 Lupinus albus HOM05D004245 ORTHO05D004783 4.6e-73 278.5 235 65.1
MD15G1031300 Malus domestica HOM05D004245 ORTHO05D004783 7.9e-73 277.7 177 79.7
Manes.18G027901 Manihot esculenta HOM05D004245 ORTHO05D004783 1.0e-72 277.3 177 78.5
FvH4_2g39911 Fragaria vesca HOM05D004245 ORTHO05D004783 1.7e-72 276.6 229 69.4
Duzib093G0228 Durio zibethinus HOM05D004245 ORTHO05D004783 3.9e-72 275.4 182 78.0
RcHm_v2.0_Chr6g0300871 Rosa chinensis HOM05D004245 ORTHO05D004783 6.6e-72 274.6 234 67.1
TWI12G0235 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 6.6e-72 274.6 179 78.8
CANSAT11G0204 Cannabis sativa HOM05D004245 ORTHO05D004783 1.1e-71 273.9 213 70.4
MSTRG.1283 Avicennia marina HOM05D004245 ORTHO05D004783 3.3e-71 272.3 238 63.4
Cpa.g.sc36.67 Carica papaya HOM05D004245 ORTHO05D004783 3.3e-71 272.3 177 80.2
Lj4A41T61 Lonicera japonica HOM05D004245 ORTHO05D004783 3.3e-71 272.3 182 78.6
MBI16_g37752_MAGBIO Magnolia biondii HOM05D004245 ORTHO05D004783 4.3e-71 271.9 166 83.1
THA.LOC104813208 Tarenaya hassleriana HOM05D004245 ORTHO05D004783 5.6e-71 271.6 236 65.3
MBI16_g37698_MAGBIO Magnolia biondii HOM05D004245 ORTHO05D004783 7.3e-71 271.2 213 70.9
MD08G1034400 Malus domestica HOM05D004245 ORTHO05D004783 1.3e-70 270.4 198 70.7
PSO832G4589 Papaver somniferum HOM05D004245 ORTHO05D004783 1.3e-70 270.4 177 78.5
Ciclev10009684m.g Citrus clementina HOM05D004245 ORTHO05D004783 1.6e-70 270.0 177 80.2
Oeu056187.1 Olea europaea HOM05D004245 ORTHO05D004783 1.6e-70 270.0 173 80.3
PGR031G3519 Punica granatum HOM05D004245 ORTHO05D004783 1.6e-70 270.0 193 72.5
Sp5g14800 Schrenkiella parvula HOM05D004245 ORTHO05D004783 6.2e-70 268.1 169 80.5
MELO3C010935.2 Cucumis melo HOM05D004245 ORTHO05D004783 1.4e-69 266.9 234 67.1
Atru.chr13.1763 Acer truncatum HOM05D004245 ORTHO05D004783 1.8e-69 266.5 180 76.7
Aqoxy2G01756 Aquilegia oxysepala HOM05D004245 ORTHO05D004783 4.0e-69 265.4 164 82.3
MSTRG.22299 Avicennia marina HOM05D004245 ORTHO05D004783 6.9e-69 264.6 167 80.8
Sc02g0006240 Simmondsia chinensis HOM05D004245 ORTHO05D004783 1.2e-68 263.8 182 76.4
Cc10_g03000 Coffea canephora HOM05D004245 ORTHO05D004783 1.5e-68 263.5 178 75.8
Actinidia22552 Actinidia chinensis HOM05D004245 ORTHO05D004783 4.5e-68 261.9 228 66.2
AUR62027309 Chenopodium quinoa HOM05D004245 ORTHO05D004783 4.5e-68 261.9 179 76.0
Actinidia29827 Actinidia chinensis HOM05D004245 ORTHO05D004783 7.6e-68 261.2 178 76.4
Manes.05G161000 Manihot esculenta HOM05D004245 ORTHO05D004783 7.6e-68 261.2 174 75.3
Eucgr.F01560 Eucalyptus grandis HOM05D004245 ORTHO05D004783 9.9e-68 260.8 194 73.2
CARHR155580 Cardamine hirsuta HOM05D004245 ORTHO05D004783 1.3e-67 260.4 169 78.7
Aa31LG4G15890 Aethionema arabicum HOM05D004245 ORTHO05D004783 1.7e-67 260.0 170 78.8
HanXRQChr05g0151891 Helianthus annuus HOM05D004245 ORTHO05D004783 1.7e-67 260.0 170 77.6
AL5G26160 Arabidopsis lyrata HOM05D004245 ORTHO05D004783 3.8e-67 258.8 171 78.4
Phvul.008G243100 Phaseolus vulgaris HOM05D004245 ORTHO05D004783 3.8e-67 258.8 202 69.3
CsaV3_2G028630 Cucumis sativus L. HOM05D004245 ORTHO05D004783 6.4e-67 258.1 228 65.8
TWI36G0248 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 1.1e-66 257.3 229 64.2
Carub.0005s1316 Capsella rubella HOM05D004245 ORTHO05D004783 1.4e-66 256.9 172 75.0
Thhalv10011147m.g Eutrema salsugineum HOM05D004245 ORTHO05D004783 1.4e-66 256.9 170 77.1
AT3G46940 Arabidopsis thaliana HOM05D004245 ORTHO05D004783 2.4e-66 256.1 165 78.2
AUR62007424 Chenopodium quinoa HOM05D004245 ORTHO05D004783 2.4e-66 256.1 179 75.4
Ah.12g056070 Amaranthus hybridus HOM05D004245 ORTHO05D004783 3.2e-66 255.8 208 67.8
C03p71110 Brassica napus HOM05D004245 ORTHO05D004783 3.2e-66 255.8 170 75.3
BolC3t19396H Brassica oleracea HOM05D004245 ORTHO05D004783 3.2e-66 255.8 170 75.3
BraA06t25141Z Brassica rapa HOM05D004245 ORTHO05D004783 3.2e-66 255.8 178 72.5
A06p20620 Brassica napus HOM05D004245 ORTHO05D004783 4.2e-66 255.4 170 75.3
EL10Ac5g11904 Beta vulgaris HOM05D004245 ORTHO05D004783 7.1e-66 254.6 179 74.3
CAN.G1273.28 Capsicum annuum HOM05D004245 ORTHO05D004783 7.1e-66 254.6 171 76.6
Sabra04G0142000 Salix brachista HOM05D004298 ORTHO05D006236 7.1e-66 254.6 260 57.3
PGSC0003DMG400024725 Solanum tuberosum HOM05D004245 ORTHO05D004783 7.1e-66 254.6 169 77.5
Migut.N00497 Erythranthe guttata HOM05D004245 ORTHO05D004783 9.3e-66 254.2 228 61.8
Glyma.14G207800 Glycine max HOM05D004245 ORTHO05D004783 1.2e-65 253.8 181 75.1
Sopen01g043550 Solanum pennellii HOM05D004245 ORTHO05D004783 1.2e-65 253.8 171 77.8
Sopen01g041550 Solanum pennellii HOM05D004245 ORTHO05D004783 1.6e-65 253.4 138 92.8
PGSC0003DMG400022502 Solanum tuberosum HOM05D004245 ORTHO05D004783 1.6e-65 253.4 138 92.8
PSO591G0217 Papaver somniferum HOM05D004245 ORTHO05D004783 2.7e-65 252.7 177 75.1
Solyc01g100030.5.1 Solanum lycopersicum HOM05D004245 ORTHO05D004783 3.5e-65 252.3 216 65.3
Atru.chr13.494 Acer truncatum HOM05D004245 ORTHO05D004783 7.9e-65 251.1 151 82.8
Cc00_g32610 Coffea canephora HOM05D004245 ORTHO05D004783 1.3e-64 250.4 176 73.3
Rhsim06G0034500 Rhododendron simsii HOM05D004245 ORTHO05D004783 1.8e-64 250.0 177 74.6
Actinidia38010 Actinidia chinensis HOM05D004245 ORTHO05D004783 2.3e-64 249.6 178 73.0
ClCG08G015180 Citrullus lanatus HOM05D004245 ORTHO05D004783 3.9e-64 248.8 173 76.3
ECA246G2445 Erigeron canadensis HOM05D004245 ORTHO05D004783 3.9e-64 248.8 166 77.1
VMungo0647G1970 Vigna mungo HOM05D004245 ORTHO05D004783 3.9e-64 248.8 206 66.5
DCAR_020361 Daucus carota HOM05D004245 ORTHO05D004783 5.1e-64 248.4 146 84.2
HanXRQChr08g0223611 Helianthus annuus HOM05D004245 ORTHO05D004783 5.1e-64 248.4 226 63.3
Psat5g146640 Pisum sativum HOM05D004245 ORTHO05D004783 5.1e-64 248.4 139 88.5
CDE12G0639 Ceratophyllum demersum HOM05D004245 ORTHO05D004783 6.7e-64 248.1 170 74.1
CDE04G3793 Ceratophyllum demersum HOM05D004245 ORTHO05D004783 1.1e-63 247.3 227 62.1
Medtr3g063110 Medicago truncatula HOM05D004245 ORTHO05D004783 1.9e-63 246.5 139 87.1
CiPaw.15G077400 Carya illinoinensis HOM05D004245 ORTHO05D004783 4.3e-63 245.4 138 87.0
Ca_15096_v3 Cicer arietinum L. HOM05D004245 ORTHO05D004783 4.3e-63 245.4 139 88.5
ATR0124G052 Amborella trichopoda HOM05D004245 ORTHO05D004783 7.4e-63 244.6 182 72.0
MD08G1034500 Malus domestica HOM05D004245 ORTHO05D004783 9.6e-63 244.2 177 72.3
Rhsim07G0237700 Rhododendron simsii HOM05D004245 ORTHO05D004783 1.3e-62 243.8 248 57.7
TPR.G37404 Trifolium pratense HOM05D004245 ORTHO05D004783 1.6e-62 243.4 160 78.8
Lalb_Chr17g0345751 Lupinus albus HOM05D004245 ORTHO05D004783 2.8e-62 242.7 171 74.3
TPR.G19056 Trifolium pratense HOM05D004245 ORTHO05D004783 2.8e-62 242.7 139 86.3
CAN.G134.178 Capsicum annuum HOM05D004245 ORTHO05D004783 1.1e-61 240.7 139 88.5
PSO764G0231 Papaver somniferum HOM05D004245 ORTHO05D004783 2.4e-61 239.6 169 72.2
Glyma.18G048400 Glycine max HOM05D004245 ORTHO05D004783 4.5e-60 235.3 138 84.1
SEGI_17618 Sequoiadendron giganteum HOM05D004245 ORTHO05D004783 4.5e-60 235.3 164 74.4
HPP92_000905 Vanilla planifolia HOM05D004245 ORTHO05D004783 1.3e-59 233.8 169 72.8
Pp3c16_25660 Physcomitrium patens HOM05D004245 ORTHO05D004783 2.9e-59 232.6 162 74.7
Zm00001eb052270 Zea mays HOM05D004245 ORTHO05D004783 8.4e-59 231.1 144 82.6
SEGI_12681 Sequoiadendron giganteum HOM05D004245 ORTHO05D004783 9.3e-58 227.6 169 71.6
Mapoly0133s0010 Marchantia polymorpha HOM05D004245 ORTHO05D004783 1.2e-57 227.3 174 66.7
Solyc01g097970.4 Solanum lycopersicum HOM05D004245 ORTHO05D004783 7.9e-57 224.6 142 81.0
Sabra02G0198600 Salix brachista HOM05D004245 ORTHO05D004783 2.3e-56 223.0 167 70.1
SMO146G0275 Selaginella moellendorffii HOM05D004245 ORTHO05D004783 3.9e-56 222.2 138 79.0
AagrBONN_evm.TU.Sc2ySwM_117.1092 Anthoceros agrestis HOM05D004245 ORTHO05D004783 1.6e-54 216.9 168 64.9
Os03g0669100 Oryza sativa ssp. japonica HOM05D004245 ORTHO05D004783 1.6e-54 216.9 132 82.6
HPP92_000939 Vanilla planifolia HOM05D004245 ORTHO05D004783 5.3e-53 211.8 163 69.9
MCO05G374 Micromonas commoda HOM05D004245 ORTHO05D004783 1.9e-50 203.4 138 73.9
CBR_g37457 Chara braunii HOM05D004245 ORTHO05D004783 3.5e-49 199.1 147 68.7
Cfa018144 Carpinus fangiana HOM05D004245 ORTHO05D004783 4.8e-46 188.7 172 64.0
Cre16.g667850 Chlamydomonas reinhardtii HOM05D004245 ORTHO05D004783 6.3e-46 188.3 178 55.1
PRCOL_00002276 Prasinoderma coloniale HOM05D004245 ORTHO05D004783 1.8e-40 170.2 153 56.9
Cc10_g02990 Coffea canephora HOM05D004245 ORTHO05D004783 3.7e-38 162.5 134 63.4
Peaxi162Scf00690g00216 Petunia axillaris HOM05D004245 ORTHO05D004783 1.4e-37 160.6 136 63.2
Nitab4.5_0004954g0010 Nicotiana tabacum HOM05D004245 ORTHO05D004783 4.5e-36 155.6 131 60.3
PGSC0003DMG400005159 Solanum tuberosum HOM05D004245 ORTHO05D004783 1.3e-35 154.1 137 59.1
Solyc04g080250.3 Solanum lycopersicum HOM05D004245 ORTHO05D004783 1.7e-35 153.7 137 59.9
CAN.G1226.1 Capsicum annuum HOM05D004245 ORTHO05D004783 2.2e-35 153.3 137 58.4
unitig_85.g27241 Utricularia gibba HOM05D004245 ORTHO05D004783 5.0e-35 152.1 82 86.6
QL02p008415 Quercus lobata HOM05D000526 ORTHO05D004783 3.9e-32 142.5 112 66.1
unitig_578.g16734 Utricularia gibba HOM05D004245 ORTHO05D004783 2.0e-31 140.2 170 50.6
Oeu029862.1 Olea europaea HOM05D004245 ORTHO05D004783 2.2e-30 136.7 103 66.0
CBR_g21266 Chara braunii HOM05D004245 ORTHO05D004783 6.3e-30 135.2 137 51.8
Cfa018886 Carpinus fangiana HOM05D004245 ORTHO05D004783 2.0e-28 130.2 111 68.5
CBR_g21272 Chara braunii HOM05D004245 ORTHO05D004783 2.6e-28 129.8 138 47.1
Sed0016726 Sechium edule HOM05D004245 ORTHO05D004783 2.6e-28 129.8 151 58.9
SHI03308 Sapria himalayana HOM05D004245 ORTHO05D004783 1.5e-26 124.0 121 57.0
vmacro04520 Vaccinium macrocarpon HOM05D004245 ORTHO05D004783 1.2e-25 120.9 101 66.3
Hund11091 Selenicereus undatus HOM05D004245 ORTHO05D004783 3.6e-25 119.4 138 53.6
DCAR_020970 Daucus carota HOM05D004245 ORTHO05D004783 4.7e-25 119.0 96 63.5
Peaxi162Scf00037g01715 Petunia axillaris HOM05D004245 ORTHO05D004783 4.7e-25 119.0 87 73.6
Sopen04g033830 Solanum pennellii HOM05D004245 ORTHO05D004783 2.3e-24 116.7 88 67.0
Atru.chr6.1642 Acer truncatum HOM05D004245 ORTHO05D004783 4.0e-24 115.9 115 53.0
SGA_v2.0_scaffold326G48710 Striga asiatica HOM05D004245 ORTHO05D004783 4.0e-24 115.9 98 65.3
Nitab4.5_0006179g0050 Nicotiana tabacum HOM05D004245 ORTHO05D004783 1.5e-23 114.0 114 57.9
Nitab4.5_0002612g0110 Nicotiana tabacum HOM05D004245 ORTHO05D004783 5.7e-23 112.1 97 67.0
Lsat_1_v5_gn_8_78860 Lactuca sativa HOM05D004245 ORTHO05D004783 8.2e-22 108.2 146 49.3
Lsat_1_v5_gn_5_29181 Lactuca sativa HOM05D004245 ORTHO05D004783 2.4e-21 106.7 154 44.8
SHI09478 Sapria himalayana HOM05D004245 ORTHO05D004783 1.3e-19 100.9 70 71.4
Atru.chr6.1643 Acer truncatum HOM05D004245 ORTHO05D004783 2.9e-19 99.8 69 71.0
Nitab4.5_0002361g0180 Nicotiana tabacum HOM05D004245 ORTHO05D004783 8.5e-19 98.2 56 85.7
Nitab4.5_0002840g0080 Nicotiana tabacum HOM05D004245 ORTHO05D004783 1.5e-18 97.4 65 76.9
vmacro21634 Vaccinium macrocarpon HOM05D004245 ORTHO05D004783 4.2e-18 95.9 139 46.8
Peaxi162Scf00225g00127 Petunia axillaris HOM05D004245 ORTHO05D004783 2.1e-17 93.6 68 70.6
Atru.chr2.1957 Acer truncatum HOM05D004245 ORTHO05D004783 6.1e-17 92.0 56 73.2
Atru.chr13.1771 Acer truncatum HOM05D004245 ORTHO05D004783 7.0e-13 78.6 83 55.4
SHI20747 Sapria himalayana HOM05D003927 ORTHO05D004905 9.1e-13 78.2 63 65.1
COL.COLO4_04917 Corchorus olitorius HOM05D004245 ORTHO05D004783 1.0e-11 74.7 45 80.0
Lsat_1_v5_gn_0_32861 Lactuca sativa HOM05D031264 ORTHO05D004783 1.3e-11 74.3 122 40.2
FAN15G2450 Fragaria x ananassa HOM05D004245 ORTHO05D004783 3.8e-11 72.8 118 52.5
SalBow8G3107 Salvia bowleyana HOM05D004245 ORTHO05D004783 3.2e-10 69.7 74 58.1
Dinv03456 Davidia involucrata HOM05D004245 ORTHO05D004783 2.1e-09 67.0 108 43.5
Eucgr.C01497 Eucalyptus grandis HOM05D004245 ORTHO05D004783 4.7e-09 65.9 44 75.0
FAN27G0770 Fragaria x ananassa HOM05D004245 ORTHO05D004783 6.1e-09 65.5 53 73.6
Actinidia15321 Actinidia chinensis HOM05D004245 ORTHO05D004783 1.0e-08 64.7 57 61.4
arahy.Tifrunner.gnm1.ann1.8Q4PR4 Arachis hypogaea HOM05D004245 ORTHO05D004783 3.0e-08 63.2 37 81.1
unitig_85.g27240 Utricularia gibba HOM05D004245 ORTHO05D004783 3.0e-08 63.2 64 56.2
Nitab4.5_0000110g0590 Nicotiana tabacum HOM05D004245 ORTHO05D004783 3.7e-06 56.2 47 61.7
arahy.Tifrunner.gnm1.ann1.20SHP8 Arachis hypogaea HOM05D004245 ORTHO05D004783 8.3e-06 55.1 30 83.3
arahy.Tifrunner.gnm1.ann1.3ZQ4SN Arachis hypogaea HOM05D004245 ORTHO05D004783 8.3e-06 55.1 30 83.3


User provided reference genes

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