Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G1366 Trochodendron aralioides HOM05D003855 ORTHO05D004722 0.0e+00 2120.5 1084 100.0
Nn5g30224 Nelumbo nucifera HOM05D003855 ORTHO05D004722 0.0e+00 1859.3 1085 86.4
GSVIVG01031766001 Vitis vinifera HOM05D003855 ORTHO05D004722 0.0e+00 1849.7 1103 84.2
Dinv42141 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1846.6 1087 85.2
Cpa.g.sc62.29 Carica papaya HOM05D003855 ORTHO05D004722 0.0e+00 1818.9 1086 84.0
Cfa005469 Carpinus fangiana HOM05D003855 ORTHO05D004722 0.0e+00 1814.7 1088 83.8
Thecc.02G098600 Theobroma cacao HOM05D003855 ORTHO05D004722 0.0e+00 1809.3 1091 82.6
CSS0001000 Camellia sinensis var. sinensis HOM05D003855 ORTHO05D004722 0.0e+00 1801.2 1086 82.7
Dinv23608 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1798.9 1086 83.2
Gorai.012G150300 Gossypium raimondii HOM05D003855 ORTHO05D004722 0.0e+00 1794.6 1095 81.8
Gohir.D04G162300 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1793.1 1095 81.7
Aqoxy6G01362 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 0.0e+00 1792.3 1089 83.5
TWI79G1596 Tripterygium wilfordii HOM05D003855 ORTHO05D004722 0.0e+00 1788.9 1092 82.1
Gohir.A04G120800 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1788.1 1095 81.6
Duzib052G0714 Durio zibethinus HOM05D003855 ORTHO05D004722 0.0e+00 1783.1 1094 81.7
Manes.10G066200 Manihot esculenta HOM05D003855 ORTHO05D004722 0.0e+00 1782.3 1088 82.0
COL.COLO4_32675 Corchorus olitorius HOM05D003855 ORTHO05D004722 0.0e+00 1781.5 1092 82.2
Eucgr.G01465 Eucalyptus grandis HOM05D003855 ORTHO05D004722 0.0e+00 1775.4 1097 81.9
Ciclev10027722m.g Citrus clementina HOM05D003855 ORTHO05D004722 0.0e+00 1773.1 1086 81.7
Potri.004G142300 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1771.1 1093 81.6
Prupe.8G122100 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1767.7 1095 82.5
MBI06_g04502_MAGBIO Magnolia biondii HOM05D003855 ORTHO05D004722 0.0e+00 1766.1 1090 81.7
PGR042G3302 Punica granatum HOM05D003855 ORTHO05D004722 0.0e+00 1765.7 1090 81.6
CiPaw.05G052400 Carya illinoinensis HOM05D003855 ORTHO05D004722 0.0e+00 1765.0 1089 81.4
Potri.009G103700 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1761.9 1091 82.1
PSO675G1899 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1760.0 1090 82.1
PSO541G0814 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1758.4 1088 81.4
Sed0020763 Sechium edule HOM05D003855 ORTHO05D004722 0.0e+00 1758.0 1087 79.9
MELO3C018441.2 Cucumis melo HOM05D003855 ORTHO05D004722 0.0e+00 1755.0 1093 79.7
QL11p036227 Quercus lobata HOM05D003855 ORTHO05D004722 0.0e+00 1755.0 1115 80.1
ECA234G3461 Erigeron canadensis HOM05D003855 ORTHO05D004722 0.0e+00 1751.5 1085 80.6
CsaV3_7G008690 Cucumis sativus L. HOM05D003855 ORTHO05D004722 0.0e+00 1743.4 1089 79.2
Sabra09G0079400 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1743.0 1110 80.0
HanXRQChr10g0301751 Helianthus annuus HOM05D003855 ORTHO05D004722 0.0e+00 1735.7 1087 80.2
Oeu007277.1 Olea europaea HOM05D003855 ORTHO05D004722 0.0e+00 1732.2 1090 80.1
SalBow6G4323 Salvia bowleyana HOM05D003855 ORTHO05D004722 0.0e+00 1729.9 1091 79.2
MSTRG.16753 Avicennia marina HOM05D003855 ORTHO05D004722 0.0e+00 1729.5 1090 79.4
Migut.B00330 Erythranthe guttata HOM05D003855 ORTHO05D004722 0.0e+00 1729.5 1093 79.5
FvH4_2g06380 Fragaria vesca HOM05D003855 ORTHO05D004722 0.0e+00 1729.5 1085 80.3
DCAR_029027 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1728.8 1100 78.7
RcHm_v2.0_Chr6g0258261 Rosa chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1728.0 1015 83.9
Phvul.002G054400 Phaseolus vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1726.5 1092 79.3
Sabra04G0094100 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1726.5 1067 81.5
Sopen01g050820 Solanum pennellii HOM05D003855 ORTHO05D004722 0.0e+00 1721.8 1086 79.0
Glyma.01G244900 Glycine max HOM05D003855 ORTHO05D004722 0.0e+00 1719.5 1122 77.5
Solyc01g108600.3 Solanum lycopersicum HOM05D003855 ORTHO05D004722 0.0e+00 1718.7 1086 79.0
Peaxi162Scf00016g01731 Petunia axillaris HOM05D003855 ORTHO05D004722 0.0e+00 1716.0 1085 78.9
PGSC0003DMG400025820 Solanum tuberosum HOM05D003855 ORTHO05D004722 0.0e+00 1715.7 1086 78.7
VMungo1215G1975 Vigna mungo HOM05D003855 ORTHO05D004722 0.0e+00 1715.7 1092 78.8
Ca_24336_v3 Cicer arietinum L. HOM05D003855 ORTHO05D004722 0.0e+00 1710.3 1087 79.0
Lj1g0003010 Lotus japonicus HOM05D003855 ORTHO05D004722 0.0e+00 1709.1 1023 83.2
FAN15G0137 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1708.7 1133 77.2
ATR0100G044 Amborella trichopoda HOM05D003855 ORTHO05D004722 0.0e+00 1703.7 1088 78.7
Lsat_1_v5_gn_5_112961 Lactuca sativa HOM05D003855 ORTHO05D004722 0.0e+00 1703.7 1081 79.5
Nitab4.5_0001899g0100 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1701.8 1086 78.7
FAN27G3432 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1693.7 1085 78.8
arahy.Tifrunner.gnm1.ann1.7G1ZKD Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1691.8 1092 78.2
Lalb_Chr16g0376231 Lupinus albus HOM05D003855 ORTHO05D004722 0.0e+00 1689.5 1006 82.3
Medtr5g004680 Medicago truncatula HOM05D003855 ORTHO05D004722 0.0e+00 1689.5 1035 81.3
Cc02_g18640 Coffea canephora HOM05D003855 ORTHO05D004722 0.0e+00 1687.5 1085 77.0
Sc08g0000010 Simmondsia chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1687.2 1091 77.5
CDE10G0143 Ceratophyllum demersum HOM05D003855 ORTHO05D004722 0.0e+00 1686.4 1084 77.9
SGA_v2.0_scaffold32G13071 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1684.8 1112 76.6
FAN20G0084 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1682.2 1185 73.7
Psat4g213560 Pisum sativum HOM05D003855 ORTHO05D004722 0.0e+00 1676.0 1028 80.9
Hund00328 Selenicereus undatus HOM05D003855 ORTHO05D004722 0.0e+00 1671.8 1093 76.9
vmacro02191 Vaccinium macrocarpon HOM05D003855 ORTHO05D004722 0.0e+00 1670.6 1173 73.1
Nitab4.5_0002097g0080 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1667.9 1086 77.5
Rhsim11G0167000 Rhododendron simsii HOM05D003855 ORTHO05D004722 0.0e+00 1664.8 1202 71.6
THA.LOC104818544 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1649.0 1007 80.7
THA.LOC104801598 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1643.6 1097 75.3
Sp3g17240 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1640.2 1011 79.3
AL3G32540 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1639.8 1031 78.0
Carub.0001s3883 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1639.4 1081 75.9
AT1G49630 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1636.3 1081 75.8
Thhalv10019955m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1636.3 1085 75.3
AT3G19170 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1635.2 1087 74.9
Carub.0003s1899 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1632.8 1011 78.4
Zm00001eb255690 Zea mays HOM05D003855 ORTHO05D004722 0.0e+00 1631.7 1003 80.5
Ah.01g020190 Amaranthus hybridus HOM05D003855 ORTHO05D004722 0.0e+00 1631.3 1116 74.5
BcaB04g19030 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1630.5 1084 74.7
Thhalv10011199m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1630.5 1025 78.8
BcaC01g03642 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1627.8 1011 78.4
AL1G57020 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1626.7 1081 75.5
CARHR094570 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1625.5 1084 74.5
BraA03t13267Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1624.8 1082 75.0
BcaB07g33638 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1624.4 1016 78.4
BraA01t03617Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1624.4 1094 74.1
EL10Ac9g21832 Beta vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1623.6 1078 76.3
BolC3t17311H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1622.8 1011 78.5
A03p41100 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1622.4 1082 74.9
C03p50190 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1619.8 1011 78.3
Sp1g36500 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1619.0 1088 75.1
BcaC08g43166 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1615.5 997 78.8
A01p35360 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1614.0 1079 74.6
BolC6t35586H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1609.0 1003 78.4
A06p03570 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1608.2 987 79.3
BraA06t23565Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1605.1 997 78.8
C01p44870 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1604.0 1094 73.2
C06p04590 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1603.6 1002 78.0
AUR62011441 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1593.9 1126 72.8
Aa31LG10G4390 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1593.6 1016 78.0
Aa31LG8G5960 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1591.6 1091 73.5
BolC1t04455H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1587.0 1144 70.2
DCAR_001621 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1571.2 1032 75.8
ClCG02G005810 Citrullus lanatus HOM05D003855 ORTHO05D004722 0.0e+00 1570.1 1117 71.9
Lj5A208T47 Lonicera japonica HOM05D003855 ORTHO05D004722 0.0e+00 1524.2 869 86.4
AUR62016621 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1521.9 969 77.4
TPR.G21611 Trifolium pratense HOM05D003855 ORTHO05D004722 0.0e+00 1518.1 914 81.8
MD10G1092200 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1515.4 1091 74.0
SGA_v2.0_scaffold90G27671 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1481.1 1018 73.3
Pp3c5_3160 Physcomitrium patens HOM05D003855 ORTHO05D004722 0.0e+00 1468.8 1017 70.1
Mapoly0138s0034 Marchantia polymorpha HOM05D003855 ORTHO05D004722 0.0e+00 1444.9 1020 68.8
Haze_01847 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1424.1 1108 69.3
Haze_01842 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1422.9 1108 69.3
SMO169G0211 Selaginella moellendorffii HOM05D003855 ORTHO05D004722 0.0e+00 1384.8 958 70.5
arahy.Tifrunner.gnm1.ann1.920WM2 Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1354.7 801 83.3
CBR_g17894 Chara braunii HOM05D003855 ORTHO05D004722 0.0e+00 1309.7 1004 64.9
Prupe.8G122200 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1249.6 1075 62.0
HPP92_005967 Vanilla planifolia HOM05D003855 ORTHO05D004722 0.0e+00 1211.1 854 73.0
CAN.G1041.7 Capsicum annuum HOM05D003855 ORTHO05D004722 0.0e+00 1198.7 748 79.8
MD11G1150900 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1181.8 754 80.1
CARHR039670 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1144.8 722 78.4
MCO05G354 Micromonas commoda HOM05D003855 ORTHO05D004722 0.0e+00 1123.6 1042 53.9
Cre01.g020918 Chlamydomonas reinhardtii HOM05D003855 ORTHO05D004722 0.0e+00 1119.8 1006 56.1
PRCOL_00004407 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 0.0e+00 1090.9 999 55.0
DCAR_001622 Daucus carota HOM05D003855 ORTHO05D004722 7.4e-312 1073.9 739 72.3
MD05G1078000 Malus domestica HOM05D003855 ORTHO05D004722 4.9e-298 1028.1 881 61.5
unitig_21.g20751 Utricularia gibba HOM05D003855 ORTHO05D004722 2.9e-282 975.7 890 59.2
Actinidia00451 Actinidia chinensis HOM05D003855 ORTHO05D004722 4.2e-273 945.3 596 80.0
Mapoly0813s0001 Marchantia polymorpha HOM05D003855 ORTHO05D004722 4.3e-270 935.3 777 60.0
SHI05876 Sapria himalayana HOM05D003855 ORTHO05D004722 4.2e-265 918.7 580 76.2
CBR_g29853 Chara braunii HOM05D003855 ORTHO05D004722 1.7e-245 853.6 985 45.0
Mapoly0138s0037 Marchantia polymorpha HOM05D003855 ORTHO05D004722 6.0e-219 765.4 671 58.0
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 1.8e-215 753.8 642 62.0
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 2.3e-210 736.9 705 56.5
Actinidia00452 Actinidia chinensis HOM05D003855 ORTHO05D004722 1.3e-205 721.1 456 80.0
Atru.chr5.2746 Acer truncatum HOM05D003855 ORTHO05D004722 7.8e-187 658.7 418 78.0
Actinidia12962 Actinidia chinensis HOM05D003855 ORTHO05D004722 2.8e-184 650.2 529 65.8
SEGI_28735 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 3.8e-181 639.8 413 77.2
Ciclev10029929m.g Citrus clementina HOM05D003855 ORTHO05D004722 1.1e-177 628.2 505 66.7
Atru.chr5.2745 Acer truncatum HOM05D003855 ORTHO05D004722 3.8e-165 586.6 339 87.0
SHI03491 Sapria himalayana HOM05D000105 ORTHO05D004722 4.2e-164 583.2 1030 37.7
Ciclev10030315m.g Citrus clementina HOM05D003855 ORTHO05D004722 1.3e-160 571.6 481 65.3
Lsat_1_v5_gn_2_29981 Lactuca sativa HOM05D003855 ORTHO05D004722 9.4e-156 555.4 393 67.7
SEGI_28882 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 4.4e-137 493.4 329 73.3
SHI05877 Sapria himalayana HOM05D003855 ORTHO05D004722 9.1e-135 485.7 397 64.0
HPP92_005974 Vanilla planifolia HOM05D003855 ORTHO05D004722 5.5e-132 476.5 309 75.1
CAN.G1041.6 Capsicum annuum HOM05D003855 ORTHO05D004722 6.8e-130 469.5 412 61.2
MCO14G172 Micromonas commoda HOM05D003855 ORTHO05D004722 7.0e-111 406.4 988 30.5
PRCOL_00005085 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 5.8e-105 386.7 947 29.6
Atru.chr5.2744 Acer truncatum HOM05D003855 ORTHO05D004722 1.0e-101 375.9 227 81.9
Cfa026983 Carpinus fangiana HOM05D003855 ORTHO05D004722 5.0e-101 373.6 958 28.5
FAN24G2426 Fragaria x ananassa HOM05D003855 ORTHO05D004722 8.6e-101 372.9 287 69.0
PRCOL_00005679 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 2.0e-89 335.1 909 29.2
SEGI_22772 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 2.0e-81 308.5 154 91.6
CBR_g30953 Chara braunii HOM05D003855 ORTHO05D004722 4.5e-57 227.6 865 23.5
MD05G1078600 Malus domestica HOM05D003855 ORTHO05D004722 5.8e-57 227.3 222 54.5
Aqoxy7G03045 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 1.0e-53 216.5 332 35.2
MD05G1077700 Malus domestica HOM05D003855 ORTHO05D004722 3.9e-53 214.5 312 43.9
Os02g0761400 Oryza sativa ssp. japonica HOM05D003855 ORTHO05D004722 1.4e-47 196.1 124 79.8
MD05G1078400 Malus domestica HOM05D003855 ORTHO05D246709 1.8e-45 189.1 220 55.0
Mapoly0138s0035 Marchantia polymorpha HOM05D003855 ORTHO05D004722 2.8e-43 181.8 165 58.2
SHI03495 Sapria himalayana HOM05D000119 ORTHO05D000054 4.8e-43 181.0 154 61.7
MD05G1077600 Malus domestica HOM05D003855 ORTHO05D004722 1.2e-41 176.4 152 58.6
MD05G1078300 Malus domestica HOM05D003855 ORTHO05D249195 8.5e-40 170.2 273 38.8
Lj5A208T46 Lonicera japonica HOM05D003855 ORTHO05D004722 2.0e-36 159.1 159 56.0
COL.COLO4_14247 Corchorus olitorius HOM05D003855 ORTHO05D004722 9.7e-36 156.8 134 63.4
CBR_g46009 Chara braunii HOM05D003248 ORTHO05D000301 2.2e-35 155.6 461 28.2
Sc23g0007040 Simmondsia chinensis HOM05D003855 ORTHO05D004722 4.8e-35 154.5 149 55.0
CBR_g30954 Chara braunii HOM05D003855 ORTHO05D004722 4.2e-31 141.4 163 42.3
CBR_g53546 Chara braunii HOM05D003855 ORTHO05D000497 3.5e-25 121.7 423 25.1
SHI06221 Sapria himalayana HOM05D003855 ORTHO05D000001 5.9e-25 120.9 105 57.1
CBR_g53548 Chara braunii HOM05D003855 ORTHO05D004722 7.2e-23 114.0 286 26.9
MD05G1077900 Malus domestica HOM05D003855 ORTHO05D004722 2.7e-22 112.1 98 59.2
Actinidia12961 Actinidia chinensis HOM05D003855 ORTHO05D004722 9.1e-18 97.1 83 61.4
VMungo1309G1152 Vigna mungo HOM05D003855 ORTHO05D000575 5.2e-13 81.3 51 70.6
AUR62024613 Chenopodium quinoa HOM05D025040 ORTHO05D138236 1.5e-12 79.7 56 67.9
MD07G1090800 Malus domestica HOM05D003855 ORTHO05D247201 1.4e-10 73.2 55 58.2
MD05G1078700 Malus domestica HOM05D003855 ORTHO05D004722 1.8e-10 72.8 79 50.6
Lsat_1_v5_gn_9_77040 Lactuca sativa HOM05D003409 ORTHO05D004015 4.1e-10 71.6 43 72.1
Lsat_1_v5_gn_1_14301 Lactuca sativa HOM05D003855 ORTHO05D004560 1.0e-08 67.0 36 88.9
Psat1g111840 Pisum sativum HOM05D001198 ORTHO05D001599 1.9e-07 62.8 92 47.8


User provided reference genes

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