Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G1290 Trochodendron aralioides HOM05D006766 ORTHO05D008534 1.6e-46 189.1 101 100.0
Thecc.02G085300 Theobroma cacao HOM05D006766 ORTHO05D008534 6.1e-25 117.5 91 72.5
TAR625G1191 Trochodendron aralioides HOM05D006766 ORTHO05D008534 1.4e-24 116.3 93 75.3
Nn5g30294 Nelumbo nucifera HOM05D006766 ORTHO05D008534 5.1e-24 114.4 91 73.6
COL.COLO4_25930 Corchorus olitorius HOM05D006766 ORTHO05D008534 1.1e-23 113.2 91 71.4
Haze_02383 Corylus avellana HOM05D001555 ORTHO05D001616 1.5e-23 112.8 89 73.0
Cfa005004 Carpinus fangiana HOM05D006766 ORTHO05D008534 2.0e-23 112.5 89 74.2
Duzib248G0712 Durio zibethinus HOM05D006766 ORTHO05D008534 3.3e-23 111.7 89 70.8
GSVIVG01031965001 Vitis vinifera HOM05D006766 ORTHO05D008534 5.7e-23 110.9 88 68.2
Gohir.D02G215600 Gossypium hirsutum HOM05D006766 ORTHO05D008534 2.8e-22 108.6 91 68.1
Nn1g04840 Nelumbo nucifera HOM05D006766 ORTHO05D008534 6.3e-22 107.5 89 68.5
Duzib052G0491 Durio zibethinus HOM05D006766 ORTHO05D008534 1.1e-21 106.7 91 68.1
Sabra04G0102700 Salix brachista HOM05D006766 ORTHO05D008534 1.4e-21 106.3 91 68.1
Gohir.A03G194400 Gossypium hirsutum HOM05D006766 ORTHO05D008534 3.1e-21 105.1 89 67.4
Actinidia27896 Actinidia chinensis HOM05D006766 ORTHO05D008534 9.1e-21 103.6 93 68.8
TWI31G1395 Tripterygium wilfordii HOM05D006766 ORTHO05D008534 9.1e-21 103.6 89 66.3
Lsat_1_v5_gn_5_118560 Lactuca sativa HOM05D006766 ORTHO05D008534 4.5e-20 101.3 93 65.6
Prupe.8G097200 Prunus persica HOM05D006766 ORTHO05D008534 1.0e-19 100.1 93 65.6
CiPaw.05G064400 Carya illinoinensis HOM05D006766 ORTHO05D008534 2.2e-19 99.0 91 64.8
Sc18g0004470 Simmondsia chinensis HOM05D006766 ORTHO05D008534 3.8e-19 98.2 90 61.1
Manes.17G101000 Manihot esculenta HOM05D006766 ORTHO05D008534 5.0e-19 97.8 89 65.2
Cpa.g.sc62.150 Carica papaya HOM05D006766 ORTHO05D008534 6.5e-19 97.4 88 59.1
Potri.004G154800 Populus trichocarpa HOM05D006766 ORTHO05D008534 8.5e-19 97.1 89 66.3
Ciclev10029674m.g Citrus clementina HOM05D006766 ORTHO05D008534 1.1e-18 96.7 90 66.7
RcHm_v2.0_Chr6g0264231 Rosa chinensis HOM05D006766 ORTHO05D008534 1.9e-18 95.9 91 61.5
Aqoxy5G01642 Aquilegia oxysepala HOM05D006766 ORTHO05D008534 3.2e-18 95.1 92 70.7
FAN24G2015 Fragaria x ananassa HOM05D006766 ORTHO05D008534 3.2e-18 95.1 100 56.0
vmacro02108 Vaccinium macrocarpon HOM05D006766 ORTHO05D008534 3.2e-18 95.1 90 66.7
FAN27G0567 Fragaria x ananassa HOM05D006766 ORTHO05D008534 7.2e-18 94.0 93 59.1
Hma1.2p1_0066F.1_g036420 Hydrangea macrophylla HOM05D006766 ORTHO05D008534 7.2e-18 94.0 94 64.9
THA.LOC104824828 Tarenaya hassleriana HOM05D006766 ORTHO05D008534 7.2e-18 94.0 93 58.1
FvH4_2g08780 Fragaria vesca HOM05D006766 ORTHO05D008534 1.2e-17 93.2 91 59.3
MD10G1031700 Malus domestica HOM05D006766 ORTHO05D008534 1.6e-17 92.8 91 65.9
MD10G1076400 Malus domestica HOM05D006766 ORTHO05D008534 1.6e-17 92.8 90 63.3
Thhalv10026662m.g Eutrema salsugineum HOM05D006766 ORTHO05D008534 2.7e-17 92.0 93 57.0
Sp7g36570 Schrenkiella parvula HOM05D006766 ORTHO05D008534 2.7e-17 92.0 92 55.4
Carub.0007s0121 Capsella rubella HOM05D006766 ORTHO05D008534 4.7e-17 91.3 92 57.6
HanXRQChr10g0307051 Helianthus annuus HOM05D006766 ORTHO05D008534 6.1e-17 90.9 94 57.4
Atru.chr5.3014 Acer truncatum HOM05D006766 ORTHO05D008534 7.9e-17 90.5 78 65.4
Potri.009G115900 Populus trichocarpa HOM05D006766 ORTHO05D008534 7.9e-17 90.5 89 61.8
Eucgr.I01270 Eucalyptus grandis HOM05D006766 ORTHO05D008534 1.0e-16 90.1 88 58.0
Lsat_1_v5_gn_7_89221 Lactuca sativa HOM05D006766 ORTHO05D008534 1.0e-16 90.1 93 61.3
PGR142G1230 Punica granatum HOM05D006766 ORTHO05D008534 1.0e-16 90.1 87 62.1
AT4G39300 Arabidopsis thaliana HOM05D006766 ORTHO05D008534 1.8e-16 89.4 93 54.8
FAN15G0619 Fragaria x ananassa HOM05D006766 ORTHO05D008534 3.0e-16 88.6 93 57.0
Rhsim11G0177000 Rhododendron simsii HOM05D006766 ORTHO05D008534 3.9e-16 88.2 81 70.4
PSO541G0900 Papaver somniferum HOM05D006766 ORTHO05D008534 6.7e-16 87.4 91 60.4
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 8.8e-16 87.0 93 55.9
AL7G11290 Arabidopsis lyrata HOM05D006766 ORTHO05D008534 1.1e-15 86.7 92 54.3
CSS0023455 Camellia sinensis var. sinensis HOM05D006766 ORTHO05D008534 1.1e-15 86.7 92 64.1
QL12p018934 Quercus lobata HOM05D006766 ORTHO05D008534 1.1e-15 86.7 97 60.8
PSO675G5014 Papaver somniferum HOM05D006766 ORTHO05D008534 2.6e-15 85.5 89 59.6
PSO675G5258 Papaver somniferum HOM05D006766 ORTHO05D008534 2.6e-15 85.5 89 59.6
Hma1.2p1_0633F.1_g192560 Hydrangea macrophylla HOM05D006766 ORTHO05D008534 3.3e-15 85.1 90 62.2
CARHR247400 Cardamine hirsuta HOM05D006766 ORTHO05D008534 5.7e-15 84.3 91 52.7
Gohir.A12G028700 Gossypium hirsutum HOM05D006766 ORTHO05D008534 7.4e-15 84.0 90 58.9
Gohir.D12G028200 Gossypium hirsutum HOM05D006766 ORTHO05D008534 7.4e-15 84.0 90 58.9
Gorai.008G028800 Gossypium raimondii HOM05D006766 ORTHO05D008534 7.4e-15 84.0 90 58.9
ECA234G2659 Erigeron canadensis HOM05D006766 ORTHO05D008534 1.7e-14 82.8 95 56.8
A01p00310 Brassica napus HOM05D006766 ORTHO05D008534 2.2e-14 82.4 90 52.2
BraA01t00038Z Brassica rapa HOM05D006766 ORTHO05D008534 2.2e-14 82.4 90 52.2
Cc02_g17570 Coffea canephora HOM05D006766 ORTHO05D008534 2.8e-14 82.0 96 58.3
PSO144G0109 Papaver somniferum HOM05D006766 ORTHO05D008534 2.8e-14 82.0 91 57.1
PSO144G0117 Papaver somniferum HOM05D006766 ORTHO05D008534 2.8e-14 82.0 91 57.1
C01p00430 Brassica napus HOM05D006766 ORTHO05D008534 6.3e-14 80.9 91 50.5
BolC1t00048H Brassica oleracea HOM05D006766 ORTHO05D008534 6.3e-14 80.9 91 50.5
ClCG02G005020 Citrullus lanatus HOM05D006766 ORTHO05D008534 6.3e-14 80.9 89 56.2
CSS0001017 Camellia sinensis var. sinensis HOM05D006766 ORTHO05D008534 1.1e-13 80.1 89 61.8
Aa31LG7G14800 Aethionema arabicum HOM05D006766 ORTHO05D008534 3.1e-13 78.6 90 52.2
RcHm_v2.0_Chr5g0010131 Rosa chinensis HOM05D006766 ORTHO05D008534 3.1e-13 78.6 93 51.6
Sed0007595 Sechium edule HOM05D006766 ORTHO05D008534 3.1e-13 78.6 89 56.2
A06p48570 Brassica napus HOM05D006766 ORTHO05D008534 5.3e-13 77.8 91 49.5
Actinidia08228 Actinidia chinensis HOM05D006766 ORTHO05D008534 1.2e-12 76.6 75 69.3
BcaNung03879 Brassica carinata HOM05D006766 ORTHO05D008534 1.2e-12 76.6 93 50.5
BcaNung02343 Brassica carinata HOM05D006766 ORTHO05D008534 2.0e-12 75.9 88 47.7
C07p63250 Brassica napus HOM05D006766 ORTHO05D008534 2.0e-12 75.9 88 47.7
BolC7t46735H Brassica oleracea HOM05D006766 ORTHO05D008534 2.0e-12 75.9 88 47.7
CsaV3_7G023550 Cucumis sativus L. HOM05D006766 ORTHO05D008534 2.0e-12 75.9 89 55.1
MELO3C012523.2 Cucumis melo HOM05D006766 ORTHO05D008534 2.6e-12 75.5 90 53.3
Migut.B00236 Erythranthe guttata HOM05D006766 ORTHO05D008534 2.6e-12 75.5 90 56.7
Sed0021705 Sechium edule HOM05D006766 ORTHO05D008534 2.6e-12 75.5 89 55.1
Hund06233 Selenicereus undatus HOM05D006766 ORTHO05D008534 4.5e-12 74.7 84 59.5
Aa31LG6G15960 Aethionema arabicum HOM05D006766 ORTHO05D008534 5.9e-12 74.3 88 53.4
arahy.Tifrunner.gnm1.ann1.0D280N Arachis hypogaea HOM05D006766 ORTHO05D008534 7.7e-12 73.9 85 52.9
arahy.Tifrunner.gnm1.ann1.PI6USP Arachis hypogaea HOM05D006766 ORTHO05D008534 7.7e-12 73.9 85 52.9
Dinv42065 Davidia involucrata HOM05D006766 ORTHO05D008534 7.7e-12 73.9 88 55.7
Lsat_1_v5_gn_9_70521 Lactuca sativa HOM05D006766 ORTHO05D008534 7.7e-12 73.9 88 56.8
EL10Ac9g21725 Beta vulgaris HOM05D006766 ORTHO05D008534 1.7e-11 72.8 89 56.2
Ah.01g019400 Amaranthus hybridus HOM05D001555 ORTHO05D001616 2.2e-11 72.4 89 56.2
Sabra09G0089100 Salix brachista HOM05D006766 ORTHO05D008534 3.8e-11 71.6 47 78.7
Gorai.005G243600 Gossypium raimondii HOM05D006766 ORTHO05D008534 6.5e-11 70.9 90 52.2
Ah.01g006260 Amaranthus hybridus HOM05D006766 ORTHO05D008534 1.5e-10 69.7 83 55.4
Psat7g184720 Pisum sativum HOM05D006766 ORTHO05D008534 2.5e-10 68.9 87 50.6
AUR62011324 Chenopodium quinoa HOM05D006766 ORTHO05D008534 9.4e-10 67.0 85 56.5
Lalb_Chr03g0025701 Lupinus albus HOM05D006766 ORTHO05D008534 9.4e-10 67.0 87 49.4
DCAR_003674 Daucus carota HOM05D006766 ORTHO05D008534 1.6e-09 66.2 76 55.3
AUR62016736 Chenopodium quinoa HOM05D006766 ORTHO05D008534 3.6e-09 65.1 82 57.3
Ca_20875_v3 Cicer arietinum L. HOM05D006766 ORTHO05D008534 4.7e-09 64.7 87 48.3
Medtr4g070030 Medicago truncatula HOM05D006766 ORTHO05D008534 6.1e-09 64.3 89 49.4
TPR.G19399 Trifolium pratense HOM05D006766 ORTHO05D008534 1.4e-08 63.2 89 48.3
Lj3g0004404 Lotus japonicus HOM05D006766 ORTHO05D008534 1.8e-08 62.8 89 48.3
RcHm_v2.0_Chr1g0349571 Rosa chinensis HOM05D006766 ORTHO05D008534 1.8e-08 62.8 41 78.0
VMungo1127G0063 Vigna mungo HOM05D006766 ORTHO05D008534 6.7e-08 60.8 82 52.4
Lalb_Chr01g0002551 Lupinus albus HOM05D006766 ORTHO05D008534 8.8e-08 60.5 87 43.7
CDE04G2003 Ceratophyllum demersum HOM05D006766 ORTHO05D008534 2.6e-07 58.9 88 47.7
Phvul.011G045300 Phaseolus vulgaris HOM05D006766 ORTHO05D008534 2.6e-07 58.9 82 50.0
SalBow6G1480 Salvia bowleyana HOM05D006766 ORTHO05D008534 2.6e-07 58.9 95 44.2
FAN16G3600 Fragaria x ananassa HOM05D006766 ORTHO05D008534 3.3e-07 58.5 93 46.2
Glyma.11G117900 Glycine max HOM05D006766 ORTHO05D008534 3.3e-07 58.5 82 51.2
Lj5g0021871 Lotus japonicus HOM05D006766 ORTHO05D008534 3.3e-07 58.5 91 48.4
QL05p011176 Quercus lobata HOM05D006766 ORTHO05D008534 9.7e-07 57.0 29 89.7
SalBow6G2329 Salvia bowleyana HOM05D006766 ORTHO05D008534 9.7e-07 57.0 40 65.0
BcaNung01271 Brassica carinata HOM05D006766 ORTHO05D008534 2.2e-06 55.8 80 43.8
Glyma.12G043301 Glycine max HOM05D006766 ORTHO05D008534 3.7e-06 55.1 90 50.0
Os01g0551400 Oryza sativa ssp. japonica HOM05D006766 ORTHO05D008534 3.7e-06 55.1 93 47.3
Zm00001eb433440 Zea mays HOM05D006766 ORTHO05D008534 8.2e-06 53.9 92 46.7


User provided reference genes

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