Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G1284 Trochodendron aralioides HOM05D005562 ORTHO05D007785 3.5e-233 811.2 404 100.0
Nn1g04154 Nelumbo nucifera HOM05D005562 ORTHO05D007785 9.7e-207 723.4 404 88.6
TAR625G0430 Trochodendron aralioides HOM05D005562 ORTHO05D007785 6.3e-206 720.7 386 93.0
MBI16_g19905_MAGBIO Magnolia biondii HOM05D005562 ORTHO05D007785 5.9e-204 714.1 404 86.9
Dinv23596 Davidia involucrata HOM05D005562 ORTHO05D001378 4.7e-193 677.9 403 83.1
GSVIVG01031808001 Vitis vinifera HOM05D005562 ORTHO05D007785 6.1e-193 677.6 404 83.4
Ciclev10028560m.g Citrus clementina HOM05D005562 ORTHO05D007785 6.3e-190 667.5 407 81.1
Atru.chr5.2830 Acer truncatum HOM05D005562 ORTHO05D007785 1.4e-189 666.4 405 81.0
QL11p038618 Quercus lobata HOM05D005562 ORTHO05D007785 1.2e-188 663.3 403 81.4
Hma1.2p1_0584F.1_g183170 Hydrangea macrophylla HOM05D005562 ORTHO05D007785 3.8e-187 658.3 412 79.6
Lj9A361T59 Lonicera japonica HOM05D005562 ORTHO05D007785 3.8e-187 658.3 405 80.5
Eucgr.I01182 Eucalyptus grandis HOM05D005562 ORTHO05D007785 5.5e-186 654.4 404 80.0
Haze_01878 Corylus avellana HOM05D005562 ORTHO05D007785 1.6e-185 652.9 403 78.9
Thecc.02G095000 Theobroma cacao HOM05D005562 ORTHO05D007785 6.1e-185 651.0 405 77.8
Cfa005417 Carpinus fangiana HOM05D005562 ORTHO05D007785 4.0e-184 648.3 404 78.5
CiPaw.05G055600 Carya illinoinensis HOM05D005562 ORTHO05D007785 1.2e-183 646.7 404 79.0
Duzib248G1341 Durio zibethinus HOM05D005562 ORTHO05D007785 2.6e-183 645.6 405 77.8
Gohir.D13G035800 Gossypium hirsutum HOM05D005562 ORTHO05D007785 1.7e-182 642.9 405 78.3
MD00G1050500 Malus domestica HOM05D005562 ORTHO05D007785 1.4e-181 639.8 404 78.7
Aqoxy5G01421 Aquilegia oxysepala HOM05D005562 ORTHO05D007785 7.0e-181 637.5 405 79.5
CSS0049808 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D007785 9.1e-181 637.1 403 78.4
FvH4_2g07021 Fragaria vesca HOM05D005562 ORTHO05D007785 9.1e-181 637.1 404 79.0
Gohir.A13G037500 Gossypium hirsutum HOM05D005562 ORTHO05D007785 1.6e-180 636.3 405 78.0
Oeu057671.1 Olea europaea HOM05D005562 ORTHO05D007785 3.5e-180 635.2 404 79.2
Prupe.8G115600 Prunus persica HOM05D005562 ORTHO05D007785 3.5e-180 635.2 404 77.5
FAN27G1497 Fragaria x ananassa HOM05D005562 ORTHO05D007785 4.5e-180 634.8 404 78.7
ATR0225G001 Amborella trichopoda HOM05D005562 ORTHO05D007785 7.7e-180 634.0 408 76.7
HPP92_018726 Vanilla planifolia HOM05D005562 ORTHO05D007785 1.0e-179 633.6 404 78.5
MD10G1088500 Malus domestica HOM05D005562 ORTHO05D007785 1.7e-179 632.9 407 77.9
Gorai.013G040500 Gossypium raimondii HOM05D005562 ORTHO05D007785 3.8e-179 631.7 431 74.0
RcHm_v2.0_Chr6g0259381 Rosa chinensis HOM05D005562 ORTHO05D007785 3.8e-179 631.7 404 79.0
THA.LOC104814570 Tarenaya hassleriana HOM05D005562 ORTHO05D007785 4.7e-177 624.8 403 75.7
EL10Ac3g06682 Beta vulgaris HOM05D005562 ORTHO05D007785 8.0e-177 624.0 404 75.2
EL10Ac1g01621 Beta vulgaris HOM05D005562 ORTHO05D007785 1.0e-176 623.6 404 75.2
Cc07_g19550 Coffea canephora HOM05D005562 ORTHO05D007785 1.0e-176 623.6 398 78.1
PGR142G1983 Punica granatum HOM05D005562 ORTHO05D007785 1.0e-176 623.6 404 76.7
Rhsim05G0079900 Rhododendron simsii HOM05D005562 ORTHO05D007785 2.3e-176 622.5 403 76.4
TWI79G1184 Tripterygium wilfordii HOM05D005562 ORTHO05D007785 2.3e-176 622.5 406 75.9
Migut.B00304 Erythranthe guttata HOM05D005562 ORTHO05D007785 2.0e-175 619.4 406 77.8
MELO3C021919.2 Cucumis melo HOM05D005562 ORTHO05D007785 7.5e-175 617.5 404 76.0
Manes.15G144000 Manihot esculenta HOM05D005562 ORTHO05D007785 9.8e-175 617.1 405 75.8
AUR62042921 Chenopodium quinoa HOM05D005562 ORTHO05D007785 1.8e-173 612.8 365 80.8
PGSC0003DMG402025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 2.4e-173 612.5 406 77.1
Potri.004G145700 Populus trichocarpa HOM05D005562 ORTHO05D007785 4.1e-173 611.7 407 75.7
DCAR_022068 Daucus carota HOM05D005562 ORTHO05D001378 5.4e-173 611.3 418 73.9
PSO170G1474 Papaver somniferum HOM05D005562 ORTHO05D007785 1.2e-172 610.1 404 75.7
SalBow3G1434 Salvia bowleyana HOM05D005562 ORTHO05D007785 1.2e-172 610.1 406 76.8
Sp3g33250 Schrenkiella parvula HOM05D005562 ORTHO05D007785 2.0e-172 609.4 404 74.5
Sopen01g050880 Solanum pennellii HOM05D005562 ORTHO05D007785 2.0e-172 609.4 406 75.9
PSO210G1477 Papaver somniferum HOM05D005562 ORTHO05D007785 3.5e-172 608.6 404 75.5
Solyc01g108660.4 Solanum lycopersicum HOM05D005562 ORTHO05D007785 3.5e-172 608.6 406 75.6
Sed0010996 Sechium edule HOM05D005562 ORTHO05D007785 1.0e-171 607.1 404 75.0
BcaB07g31395 Brassica carinata HOM05D005562 ORTHO05D007785 5.0e-171 604.7 403 73.7
CsaV3_2G014210 Cucumis sativus L. HOM05D005562 ORTHO05D007785 5.0e-171 604.7 404 74.3
Lalb_Chr17g0338301 Lupinus albus HOM05D005562 ORTHO05D007785 6.5e-171 604.4 405 73.3
Carub.0003s3419 Capsella rubella HOM05D005562 ORTHO05D007785 8.6e-171 604.0 403 73.7
MSTRG.5375 Avicennia marina HOM05D005562 ORTHO05D007785 1.1e-170 603.6 404 76.2
Thhalv10023506m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 1.5e-170 603.2 405 74.1
BraA09t37197Z Brassica rapa HOM05D005562 ORTHO05D007785 1.9e-170 602.8 403 73.7
Glyma.20G009400 Glycine max HOM05D005562 ORTHO05D007785 1.9e-170 602.8 404 74.3
BcaC04g22480 Brassica carinata HOM05D005562 ORTHO05D007785 2.5e-170 602.4 402 73.4
BolC9t54784H Brassica oleracea HOM05D005562 ORTHO05D007785 2.5e-170 602.4 402 73.4
Peaxi162Scf00016g01531 Petunia axillaris HOM05D005562 ORTHO05D007785 2.5e-170 602.4 408 75.2
CAN.G322.41 Capsicum annuum HOM05D005562 ORTHO05D007785 4.2e-170 601.7 411 75.9
SGA_v2.0_scaffold32G13119 Striga asiatica HOM05D005562 ORTHO05D007785 4.2e-170 601.7 402 73.4
C09p18820 Brassica napus HOM05D005562 ORTHO05D007785 5.5e-170 601.3 402 73.1
CARHR110380 Cardamine hirsuta HOM05D005562 ORTHO05D007785 5.5e-170 601.3 405 74.1
Glyma.07G179700 Glycine max HOM05D005562 ORTHO05D007785 5.5e-170 601.3 405 74.6
Aa31LG8G16860 Aethionema arabicum HOM05D005562 ORTHO05D007785 7.2e-170 600.9 403 74.9
ClCG09G017590 Citrullus lanatus HOM05D005562 ORTHO05D007785 7.2e-170 600.9 423 72.3
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 7.2e-170 600.9 372 79.6
A09p15570 Brassica napus HOM05D005562 ORTHO05D007785 9.5e-170 600.5 403 73.7
Phvul.003G012000 Phaseolus vulgaris HOM05D005562 ORTHO05D007785 1.2e-169 600.1 404 72.3
CANSAT25G3890 Cannabis sativa HOM05D005562 ORTHO05D007785 6.1e-169 597.8 383 74.2
TPR.G14865 Trifolium pratense HOM05D005562 ORTHO05D007785 8.0e-169 597.4 404 73.5
TPR.G11154 Trifolium pratense HOM05D005562 ORTHO05D007785 1.0e-168 597.0 404 73.0
Ah.13g074710 Amaranthus hybridus HOM05D005562 ORTHO05D007785 5.2e-168 594.7 404 74.5
SalBow4G0329 Salvia bowleyana HOM05D005562 ORTHO05D007785 2.0e-167 592.8 442 70.1
unitig_26.g10242 Utricularia gibba HOM05D005562 ORTHO05D007785 4.4e-167 591.7 376 76.6
Psat6g096120 Pisum sativum HOM05D005562 ORTHO05D007785 5.7e-167 591.3 404 72.5
Os03g0617900 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 7.5e-167 590.9 369 79.1
AT2G19940 Arabidopsis thaliana HOM05D005562 ORTHO05D007785 9.8e-167 590.5 374 77.5
Lj2g0016235 Lotus japonicus HOM05D005562 ORTHO05D007785 1.3e-166 590.1 404 71.5
VMungo1215G0206 Vigna mungo HOM05D005562 ORTHO05D007785 3.7e-166 588.6 404 70.8
Ca_12473_v3 Cicer arietinum L. HOM05D005562 ORTHO05D007785 1.1e-165 587.0 348 80.7
Medtr1g012540 Medicago truncatula HOM05D005562 ORTHO05D007785 1.1e-165 587.0 380 76.1
CDE01G0106 Ceratophyllum demersum HOM05D005562 ORTHO05D007785 7.0e-165 584.3 327 86.9
arahy.Tifrunner.gnm1.ann1.4TQ1KW Arachis hypogaea HOM05D005562 ORTHO05D007785 1.2e-164 583.6 433 68.6
Nitab4.5_0003726g0070 Nicotiana tabacum HOM05D005562 ORTHO05D007785 1.2e-164 583.6 405 73.3
Zm00001eb051410 Zea mays HOM05D005562 ORTHO05D007785 7.8e-164 580.9 371 77.4
arahy.Tifrunner.gnm1.ann1.ZFI36T Arachis hypogaea HOM05D005562 ORTHO05D007785 3.8e-163 578.6 392 73.0
Os10g0494200 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 3.8e-163 578.6 371 78.2
PGSC0003DMG401025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 1.9e-162 576.2 406 73.6
Lsat_1_v5_gn_9_108961 Lactuca sativa HOM05D005562 ORTHO05D007785 1.5e-159 566.6 405 70.1
Sc06g0001440 Simmondsia chinensis HOM05D005562 ORTHO05D007785 4.4e-159 565.1 314 86.0
Hund01581 Selenicereus undatus HOM05D005562 ORTHO05D007785 8.3e-158 560.8 468 63.7
Pp3c8_22120 Physcomitrium patens HOM05D005562 ORTHO05D007785 2.7e-156 555.8 368 74.2
AagrBONN_evm.TU.Sc2ySwM_117.3897 Anthoceros agrestis HOM05D005562 ORTHO05D007785 2.3e-155 552.7 373 70.5
Mapoly0036s0058 Marchantia polymorpha HOM05D005562 ORTHO05D007785 4.3e-154 548.5 365 73.2
Pp3c24_19140 Physcomitrium patens HOM05D005562 ORTHO05D007785 9.5e-154 547.4 386 71.5
BcaC04g19978 Brassica carinata HOM05D005562 ORTHO05D007785 1.6e-153 546.6 360 74.4
Nitab4.5_0001401g0050 Nicotiana tabacum HOM05D005562 ORTHO05D007785 2.8e-153 545.8 421 68.2
Thhalv10002012m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 8.0e-153 544.3 404 68.1
HanXRQChr13g0402421 Helianthus annuus HOM05D005562 ORTHO05D007785 1.1e-152 543.9 396 68.4
HanXRQChr16g0528561 Helianthus annuus HOM05D005562 ORTHO05D007785 1.1e-152 543.9 403 67.5
ECA240G1421 Erigeron canadensis HOM05D005562 ORTHO05D007785 2.6e-151 539.3 405 67.9
SMO116G0475 Selaginella moellendorffii HOM05D005562 ORTHO05D007785 1.4e-149 533.5 370 69.5
BolC9t57765H Brassica oleracea HOM05D005562 ORTHO05D007785 3.2e-149 532.3 382 70.2
FAN27G3443 Fragaria x ananassa HOM05D005562 ORTHO05D001378 4.1e-149 531.9 377 73.2
vmacro19466 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 1.6e-148 530.0 403 68.5
FAN24G3180 Fragaria x ananassa HOM05D005562 ORTHO05D001378 6.0e-148 528.1 377 72.4
AL3G48260 Arabidopsis lyrata HOM05D005562 ORTHO05D007785 8.6e-147 524.2 314 80.9
AUR62035865 Chenopodium quinoa HOM05D005562 ORTHO05D007785 2.1e-145 519.6 573 50.8
CBR_g5649 Chara braunii HOM05D005562 ORTHO05D001468 5.8e-143 511.5 355 68.5
vmacro23230 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 1.4e-133 480.3 292 80.8
Cre03.g146187 Chlamydomonas reinhardtii HOM05D005562 ORTHO05D007785 5.1e-131 471.9 370 62.2
PRCOL_00005741 Prasinoderma coloniale HOM05D005562 ORTHO05D007785 5.2e-128 461.8 350 64.3
FAN15G1080 Fragaria x ananassa HOM05D005562 ORTHO05D001378 1.2e-119 434.1 385 62.6
C09p49210 Brassica napus HOM05D005562 ORTHO05D007785 3.8e-118 429.1 286 74.1
Actinidia17846 Actinidia chinensis HOM05D005562 ORTHO05D007785 9.4e-77 291.6 194 76.8
PSO384G1669 Papaver somniferum HOM05D005562 ORTHO05D007785 3.9e-75 286.2 373 46.9
Cpa.g.sc62.58 Carica papaya HOM05D005562 ORTHO05D007785 1.0e-70 271.6 147 85.7
DCAR_021731 Daucus carota HOM05D005562 ORTHO05D007785 1.1e-64 251.5 299 50.8
HanXRQChr10g0318401 Helianthus annuus HOM05D005562 ORTHO05D007785 2.2e-62 243.8 187 61.5
Cpa.g.sc26.106 Carica papaya HOM05D005562 ORTHO05D007785 1.6e-55 221.1 170 66.5
Cpa.g.sc62.56 Carica papaya HOM05D005562 ORTHO05D007785 3.8e-54 216.5 190 61.1
Oeu021926.1 Olea europaea HOM05D005562 ORTHO05D007785 4.1e-48 196.4 112 85.7
Actinidia17880 Actinidia chinensis HOM05D005562 ORTHO05D007785 7.0e-40 169.1 112 75.0
Cfa027024 Carpinus fangiana HOM05D005562 ORTHO05D121372 1.3e-33 148.3 351 29.6
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 1.7e-33 147.9 81 85.2
Actinidia17845 Actinidia chinensis HOM05D005562 ORTHO05D030745 7.8e-31 139.0 99 68.7
SEGI_28239 Sequoiadendron giganteum HOM05D005562 ORTHO05D007785 5.2e-27 126.3 66 81.8
A10p14750 Brassica napus HOM05D005562 ORTHO05D007785 1.1e-16 92.0 53 79.2
CSS0047307 Camellia sinensis var. sinensis HOM05D007054 ORTHO05D008888 2.5e-13 80.9 74 56.8
CSS0029422 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D111180 6.2e-12 76.3 94 45.7
Glyma.08G079050 Glycine max HOM05D005562 ORTHO05D213306 1.2e-10 72.0 73 52.1
Glyma.08G079000 Glycine max HOM05D005562 ORTHO05D007785 7.6e-10 69.3 45 71.1


User provided reference genes

Program Settings