Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G1258 Trochodendron aralioides HOM05D004652 ORTHO05D005634 5.0e-125 451.1 218 100.0
Nn5g30355 Nelumbo nucifera HOM05D004652 ORTHO05D005634 1.9e-87 326.2 203 78.8
Dinv30009 Davidia involucrata HOM05D004652 ORTHO05D005634 8.1e-83 310.8 203 74.4
GSVIVG01031712001 Vitis vinifera HOM05D004652 ORTHO05D005634 8.1e-83 310.8 203 76.4
CiPaw.01G015500 Carya illinoinensis HOM05D004652 ORTHO05D005634 4.0e-82 308.5 203 71.4
Gohir.A13G042200 Gossypium hirsutum HOM05D004652 ORTHO05D005634 8.9e-82 307.4 204 79.4
Actinidia12037 Actinidia chinensis HOM05D004652 ORTHO05D005634 4.4e-81 305.1 205 73.2
Gorai.013G045700 Gossypium raimondii HOM05D004652 ORTHO05D005634 4.4e-81 305.1 204 78.4
CiPaw.01G015800 Carya illinoinensis HOM05D004652 ORTHO05D005634 1.3e-80 303.5 203 71.4
QL06p040720 Quercus lobata HOM05D004652 ORTHO05D005634 2.9e-80 302.4 212 67.9
Gohir.D13G040700 Gossypium hirsutum HOM05D004652 ORTHO05D005634 7.1e-79 297.7 204 77.5
COL.COLO4_32629 Corchorus olitorius HOM05D004652 ORTHO05D005634 9.2e-79 297.4 202 76.2
Duzib132G1249 Durio zibethinus HOM05D004652 ORTHO05D005634 2.7e-78 295.8 204 75.0
Potri.009G099600 Populus trichocarpa HOM05D004652 ORTHO05D005634 2.7e-78 295.8 213 71.4
RcHm_v2.0_Chr2g0106191 Rosa chinensis HOM05D004652 ORTHO05D005634 4.6e-78 295.0 203 70.9
GSVIVG01022087001 Vitis vinifera HOM05D004652 ORTHO05D005634 4.6e-78 295.0 204 71.1
Hma1.2p1_0670F.1_g200440 Hydrangea macrophylla HOM05D004652 ORTHO05D005634 7.8e-78 294.3 207 70.0
Atru.chr5.2643 Acer truncatum HOM05D004652 ORTHO05D005634 1.7e-77 293.1 214 73.4
Atru.chr5.2649 Acer truncatum HOM05D004652 ORTHO05D005634 1.7e-77 293.1 214 73.4
Prupe.6G231900 Prunus persica HOM05D004652 ORTHO05D005634 2.3e-77 292.7 203 70.0
CSS0025726 Camellia sinensis var. sinensis HOM05D004652 ORTHO05D005634 5.1e-77 291.6 213 67.6
Haze_15373 Corylus avellana HOM05D004652 ORTHO05D005634 1.1e-76 290.4 233 61.4
Sabra09G0075900 Salix brachista HOM05D004652 ORTHO05D005634 1.1e-76 290.4 213 70.4
Thecc.02G103600 Theobroma cacao HOM05D004652 ORTHO05D005634 1.1e-76 290.4 197 76.1
CANSAT25G2702 Cannabis sativa HOM05D004652 ORTHO05D005634 1.9e-76 289.7 212 65.6
Eucgr.I01132 Eucalyptus grandis HOM05D004652 ORTHO05D005634 1.9e-76 289.7 206 70.4
Actinidia36476 Actinidia chinensis HOM05D004652 ORTHO05D005634 2.5e-76 289.3 212 68.4
CSS0033708 Camellia sinensis var. sinensis HOM05D004652 ORTHO05D005634 3.3e-76 288.9 213 67.1
FAN23G0595 Fragaria x ananassa HOM05D004652 ORTHO05D005634 1.2e-75 287.0 212 66.0
FAN28G0632 Fragaria x ananassa HOM05D004652 ORTHO05D005634 1.2e-75 287.0 212 66.0
Eucgr.I01131 Eucalyptus grandis HOM05D004652 ORTHO05D005634 2.1e-75 286.2 206 69.9
Ciclev10030127m.g Citrus clementina HOM05D004652 ORTHO05D005634 2.8e-75 285.8 205 71.7
CsaV3_2G016420 Cucumis sativus L. HOM05D004652 ORTHO05D005634 6.2e-75 284.6 203 68.5
MELO3C020851.2 Cucumis melo HOM05D004652 ORTHO05D005634 1.1e-74 283.9 203 68.5
FAN19G0057 Fragaria x ananassa HOM05D004652 ORTHO05D005634 1.8e-74 283.1 203 67.5
FvH4_1g16330 Fragaria vesca HOM05D004652 ORTHO05D005634 2.4e-74 282.7 203 67.5
MD02G1175800 Malus domestica HOM05D004652 ORTHO05D005634 4.0e-74 282.0 203 67.0
Phvul.002G017100 Phaseolus vulgaris HOM05D004652 ORTHO05D005634 5.2e-74 281.6 206 68.9
Ca_08994_v3 Cicer arietinum L. HOM05D004652 ORTHO05D005634 8.9e-74 280.8 202 69.3
VMungo1215G2858 Vigna mungo HOM05D004652 ORTHO05D005634 8.9e-74 280.8 206 68.4
Medtr7g104350 Medicago truncatula HOM05D004652 ORTHO05D005634 2.6e-73 279.3 203 67.5
TWI31G1310 Tripterygium wilfordii HOM05D004652 ORTHO05D005634 4.4e-73 278.5 173 79.8
Lsat_1_v5_gn_4_165120 Lactuca sativa HOM05D004652 ORTHO05D005634 5.8e-73 278.1 212 66.0
Oeu049898.1 Olea europaea HOM05D004652 ORTHO05D005634 5.8e-73 278.1 212 66.0
ClCG02G012270 Citrullus lanatus HOM05D004652 ORTHO05D005634 7.6e-73 277.7 203 67.0
Aqoxy6G01262 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 9.9e-73 277.3 209 68.4
PSO675G7477 Papaver somniferum HOM05D004652 ORTHO05D005634 9.9e-73 277.3 206 67.5
Cpa.g.sc200.27 Carica papaya HOM05D004652 ORTHO05D005634 1.7e-72 276.6 204 69.1
Psat3g034240 Pisum sativum HOM05D004652 ORTHO05D005634 3.8e-72 275.4 203 67.5
TPR.G19549 Trifolium pratense HOM05D004652 ORTHO05D005634 4.9e-72 275.0 203 66.5
Duzib147G0331 Durio zibethinus HOM05D004652 ORTHO05D005634 1.1e-71 273.9 186 71.0
Glyma.11G054000 Glycine max HOM05D004652 ORTHO05D005634 2.4e-71 272.7 205 68.3
TWI09G0879 Tripterygium wilfordii HOM05D004652 ORTHO05D005634 2.4e-71 272.7 213 64.8
HanXRQChr15g0490761 Helianthus annuus HOM05D004652 ORTHO05D005634 3.2e-71 272.3 215 62.8
arahy.Tifrunner.gnm1.ann1.8Y90C0 Arachis hypogaea HOM05D004652 ORTHO05D005634 4.2e-71 271.9 212 65.1
Rhsim10G0114700 Rhododendron simsii HOM05D004652 ORTHO05D005634 1.2e-70 270.4 222 61.7
Ciclev10025986m.g Citrus clementina HOM05D004652 ORTHO05D005634 1.6e-70 270.0 208 66.8
Solyc02g093170.4 Solanum lycopersicum HOM05D004652 ORTHO05D005634 3.5e-70 268.9 204 65.7
Sopen02g037740 Solanum pennellii HOM05D004652 ORTHO05D005634 3.5e-70 268.9 204 65.7
arahy.Tifrunner.gnm1.ann1.EFTP1R Arachis hypogaea HOM05D004652 ORTHO05D005634 4.6e-70 268.5 212 64.6
AUR62013234 Chenopodium quinoa HOM05D004652 ORTHO05D005634 6.0e-70 268.1 198 69.7
Lalb_Chr05g0213341 Lupinus albus HOM05D004652 ORTHO05D005634 1.3e-69 266.9 201 65.7
Lj7A73G20 Lonicera japonica HOM05D004652 ORTHO05D005634 2.3e-69 266.2 173 71.1
ECA232G0198 Erigeron canadensis HOM05D004652 ORTHO05D005634 3.0e-69 265.8 183 68.9
PGR102G1991 Punica granatum HOM05D004652 ORTHO05D005634 3.9e-69 265.4 205 63.4
Sc07g0000730 Simmondsia chinensis HOM05D004652 ORTHO05D005634 5.1e-69 265.0 203 64.5
PGSC0003DMG400004028 Solanum tuberosum HOM05D004652 ORTHO05D005634 5.1e-69 265.0 205 65.9
Cpa.g.sc55.119 Carica papaya HOM05D004652 ORTHO05D005634 6.6e-69 264.6 177 71.8
Lj2g0023089 Lotus japonicus HOM05D004652 ORTHO05D005634 6.6e-69 264.6 207 64.7
Cc07_g06170 Coffea canephora HOM05D004652 ORTHO05D005634 1.5e-68 263.5 204 64.2
Potri.007G045900 Populus trichocarpa HOM05D004652 ORTHO05D005634 3.3e-68 262.3 212 62.3
AL7G17310 Arabidopsis lyrata HOM05D004652 ORTHO05D005634 4.3e-68 261.9 205 65.9
Gorai.007G215700 Gossypium raimondii HOM05D004652 ORTHO05D005634 4.3e-68 261.9 203 65.0
Migut.H00415 Erythranthe guttata HOM05D004652 ORTHO05D005634 7.3e-68 261.2 213 62.4
Peaxi162Scf00549g00023 Petunia axillaris HOM05D004652 ORTHO05D005634 7.3e-68 261.2 204 64.7
Sabra07G0041100 Salix brachista HOM05D004652 ORTHO05D005634 7.3e-68 261.2 203 64.0
Sp7g31800 Schrenkiella parvula HOM05D004652 ORTHO05D005634 7.3e-68 261.2 197 68.0
AT4G34090 Arabidopsis thaliana HOM05D004652 ORTHO05D005634 1.3e-67 260.4 198 66.7
CARHR242200 Cardamine hirsuta HOM05D004652 ORTHO05D005634 1.6e-67 260.0 198 66.2
Glyma.01G188100 Glycine max HOM05D004652 ORTHO05D005634 2.1e-67 259.6 208 64.9
MSTRG.23735 Avicennia marina HOM05D004652 ORTHO05D005634 2.8e-67 259.2 203 63.1
Nitab4.5_0001221g0030 Nicotiana tabacum HOM05D004652 ORTHO05D005634 3.6e-67 258.8 203 64.5
THA.LOC104807263 Tarenaya hassleriana HOM05D004652 ORTHO05D005634 3.6e-67 258.8 193 64.8
Sed0013827 Sechium edule HOM05D004652 ORTHO05D005634 6.2e-67 258.1 206 64.6
Carub.0007s0633 Capsella rubella HOM05D004652 ORTHO05D005634 8.1e-67 257.7 200 65.5
Nitab4.5_0002765g0060 Nicotiana tabacum HOM05D004652 ORTHO05D005634 1.1e-66 257.3 207 63.3
Thhalv10025679m.g Eutrema salsugineum HOM05D004652 ORTHO05D005634 2.4e-66 256.1 197 67.0
BcaNung03359 Brassica carinata HOM05D004652 ORTHO05D005634 1.2e-65 253.8 197 65.5
Aa31LG2G16510 Aethionema arabicum HOM05D002471 ORTHO05D003712 5.8e-65 251.5 172 69.2
Gohir.A11G195100 Gossypium hirsutum HOM05D004652 ORTHO05D005634 2.9e-64 249.2 164 71.3
Thecc.01G060000 Theobroma cacao HOM05D004652 ORTHO05D005634 2.9e-64 249.2 162 71.0
CDE02G2369 Ceratophyllum demersum HOM05D004652 ORTHO05D005634 8.4e-64 247.7 177 69.5
EL10Ac9g22324 Beta vulgaris HOM05D004652 ORTHO05D005634 1.9e-63 246.5 208 62.5
Manes.13G121100 Manihot esculenta HOM05D004652 ORTHO05D005634 4.2e-63 245.4 209 58.4
DCAR_010876 Daucus carota HOM05D004652 ORTHO05D005634 1.2e-62 243.8 220 59.1
BolC7t46455H Brassica oleracea HOM05D004652 ORTHO05D005634 2.7e-62 242.7 200 63.5
BraA03t15329Z Brassica rapa HOM05D004652 ORTHO05D005634 1.9e-60 236.5 175 67.4
unitig_736.g22389 Utricularia gibba HOM05D004652 ORTHO05D005634 5.6e-60 235.0 203 57.1
Os03g0109700 Oryza sativa ssp. japonica HOM05D004652 ORTHO05D005634 2.1e-59 233.0 192 60.9
Hund13540 Selenicereus undatus HOM05D004652 ORTHO05D005634 2.1e-59 233.0 170 65.3
ATR0724G029 Amborella trichopoda HOM05D004652 ORTHO05D005634 4.8e-59 231.9 171 66.7
vmacro05311 Vaccinium macrocarpon HOM05D004652 ORTHO05D005634 1.4e-58 230.3 213 57.7
A03p62590 Brassica napus HOM05D004652 ORTHO05D005634 2.4e-58 229.6 227 55.9
Zm00001eb404220 Zea mays HOM05D004652 ORTHO05D005634 3.1e-58 229.2 187 59.4
Atru.chr3.293 Acer truncatum HOM05D004652 ORTHO05D005634 5.3e-58 228.4 209 57.4
C07p60150 Brassica napus HOM05D004652 ORTHO05D005634 6.9e-58 228.0 227 55.9
THA.LOC104807591 Tarenaya hassleriana HOM05D004652 ORTHO05D005634 9.9e-57 224.2 195 59.5
AL4G13280 Arabidopsis lyrata HOM05D004652 ORTHO05D005634 1.7e-56 223.4 186 58.6
AUR62010252 Chenopodium quinoa HOM05D004652 ORTHO05D005634 2.2e-56 223.0 142 78.2
BolC8t51563H Brassica oleracea HOM05D004652 ORTHO05D005634 2.9e-56 222.6 188 60.1
AT2G23370 Arabidopsis thaliana HOM05D004652 ORTHO05D005634 1.4e-55 220.3 177 60.5
Eucgr.H01690 Eucalyptus grandis HOM05D004652 ORTHO05D005634 1.9e-55 219.9 165 63.6
Ah.01g017900 Amaranthus hybridus HOM05D004652 ORTHO05D005634 2.4e-55 219.5 153 69.3
PSO541G5706 Papaver somniferum HOM05D004652 ORTHO05D005634 2.4e-55 219.5 206 56.3
BcaC07g40988 Brassica carinata HOM05D004652 ORTHO05D005634 3.2e-55 219.2 188 59.6
C08p39900 Brassica napus HOM05D004652 ORTHO05D005634 3.2e-55 219.2 188 59.6
Sp4g02380 Schrenkiella parvula HOM05D004652 ORTHO05D005634 3.2e-55 219.2 185 59.5
HPP92_024094 Vanilla planifolia HOM05D004652 ORTHO05D005634 4.2e-55 218.8 212 53.8
A09p56940 Brassica napus HOM05D004652 ORTHO05D005634 5.5e-55 218.4 188 59.0
BraA09t41086Z Brassica rapa HOM05D004652 ORTHO05D005634 5.5e-55 218.4 188 59.0
Carub.0004s0257 Capsella rubella HOM05D004652 ORTHO05D005634 3.5e-54 215.7 172 61.6
Gohir.D11G201200 Gossypium hirsutum HOM05D004652 ORTHO05D005634 3.5e-54 215.7 144 70.1
CARHR293000 Cardamine hirsuta HOM05D004652 ORTHO05D005634 7.9e-54 214.5 183 59.0
AUR62001905 Chenopodium quinoa HOM05D004652 ORTHO05D005634 2.8e-51 206.1 170 59.4
SGA_v2.0_scaffold143G35809 Striga asiatica HOM05D004652 ORTHO05D005634 3.4e-49 199.1 146 63.0
Hund00119 Selenicereus undatus HOM05D004652 ORTHO05D005634 1.2e-46 190.7 208 54.8
SGA_v2.0_scaffold34G13618 Striga asiatica HOM05D004652 ORTHO05D005634 1.8e-45 186.8 147 62.6
Aa31LG7G13600 Aethionema arabicum HOM05D004652 ORTHO05D005634 5.1e-45 185.3 224 47.3
Mapoly0032s0004 Marchantia polymorpha HOM05D004652 ORTHO05D005634 8.7e-45 184.5 177 48.6
Ah.02g125990 Amaranthus hybridus HOM05D004652 ORTHO05D005634 1.6e-43 180.3 151 58.9
Pp3c4_13980 Physcomitrium patens HOM05D004652 ORTHO05D005634 1.6e-43 180.3 180 48.9
Pp3c13_18360 Physcomitrium patens HOM05D004652 ORTHO05D005634 4.1e-42 175.6 171 47.4
SMO367G0761 Selaginella moellendorffii HOM05D004652 ORTHO05D005634 4.1e-42 175.6 176 48.3
AUR62003906 Chenopodium quinoa HOM05D004652 ORTHO05D005634 3.4e-41 172.6 142 58.5
Oeu004436.1 Olea europaea HOM05D004652 ORTHO05D005634 1.4e-39 167.2 183 49.7
Thhalv10000243m.g Eutrema salsugineum HOM05D004652 ORTHO05D005634 9.3e-39 164.5 188 48.9
AagrBONN_evm.TU.Sc2ySwM_362.2895 Anthoceros agrestis HOM05D004652 ORTHO05D005634 5.7e-36 155.2 169 47.3
CBR_g34458 Chara braunii HOM05D004652 ORTHO05D005634 1.3e-35 154.1 198 42.4
COL.COLO4_24563 Corchorus olitorius HOM05D004652 ORTHO05D005634 4.5e-33 145.6 109 64.2
EL10Ac6g15724 Beta vulgaris HOM05D004652 ORTHO05D005634 4.2e-23 112.5 95 57.9
Cre13.g563150 Chlamydomonas reinhardtii HOM05D004652 ORTHO05D005634 3.3e-20 102.8 187 32.6
PRCOL_00001748 Prasinoderma coloniale HOM05D004652 ORTHO05D005634 2.2e-19 100.1 165 35.8
MCO15G669 Micromonas commoda HOM05D004652 ORTHO05D005634 7.7e-17 91.7 181 30.4
Lalb_Chr09g0323281 Lupinus albus HOM05D004652 ORTHO05D005634 2.2e-16 90.1 61 63.9
Cc00_g07740 Coffea canephora HOM05D004652 ORTHO05D005634 4.2e-15 85.9 75 50.7
Potri.001G304401 Populus trichocarpa HOM05D004652 ORTHO05D005634 2.7e-14 83.2 84 53.6
ECA248G0229 Erigeron canadensis HOM05D004652 ORTHO05D005634 2.3e-13 80.1 70 51.4
MCO09G010 Micromonas commoda HOM05D004652 ORTHO05D005634 4.4e-12 75.9 164 30.5


User provided reference genes

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