Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G1104 Trochodendron aralioides HOM05D007587 ORTHO05D009657 2.2e-53 211.8 96 100.0
Dinv39924 Davidia involucrata HOM05D007587 ORTHO05D009657 1.1e-23 113.2 63 79.4
Prupe.7G145500 Prunus persica HOM05D007587 ORTHO05D009657 2.7e-22 108.6 62 72.6
Ciclev10027038m.g Citrus clementina HOM05D007587 ORTHO05D009657 2.3e-21 105.5 60 71.7
Atru.chr3.473 Acer truncatum HOM05D007587 ORTHO05D009657 1.1e-20 103.2 58 70.7
Gohir.A11G188150 Gossypium hirsutum HOM05D007587 ORTHO05D009657 1.9e-20 102.4 70 62.9
Gohir.D11G194650 Gossypium hirsutum HOM05D007587 ORTHO05D009657 1.9e-20 102.4 70 62.9
Gorai.007G208100 Gossypium raimondii HOM05D007587 ORTHO05D009657 1.9e-20 102.4 70 62.9
Migut.H00502 Erythranthe guttata HOM05D007587 ORTHO05D009657 2.5e-20 102.1 48 77.1
SalBow1G8004 Salvia bowleyana HOM05D007587 ORTHO05D009657 4.3e-20 101.3 65 64.6
Phvul.003G249500 Phaseolus vulgaris HOM05D007587 ORTHO05D009657 1.2e-19 99.8 66 62.1
COL.COLO4_22178 Corchorus olitorius HOM05D007587 ORTHO05D009657 1.6e-19 99.4 63 63.5
Cpa.g.sc15.59 Carica papaya HOM05D007587 ORTHO05D009657 2.1e-19 99.0 68 58.8
CSS0038445 Camellia sinensis var. sinensis HOM05D007587 ORTHO05D009657 3.6e-19 98.2 62 61.3
Thecc.01G045600 Theobroma cacao HOM05D007587 ORTHO05D009657 3.6e-19 98.2 71 60.6
FAN28G1310 Fragaria x ananassa HOM05D007587 ORTHO05D009657 6.2e-19 97.4 56 64.3
Manes.12G097400 Manihot esculenta HOM05D007587 ORTHO05D009657 6.2e-19 97.4 54 66.7
Medtr5g018610 Medicago truncatula HOM05D007587 ORTHO05D009657 6.2e-19 97.4 57 66.7
FAN23G2556 Fragaria x ananassa HOM05D007587 ORTHO05D009657 1.1e-18 96.7 45 77.8
Cc07_g05380 Coffea canephora HOM05D007587 ORTHO05D009657 1.4e-18 96.3 65 58.5
Glyma.16G143900 Glycine max HOM05D007587 ORTHO05D009657 1.4e-18 96.3 59 61.0
Manes.13G132300 Manihot esculenta HOM05D007587 ORTHO05D009657 1.4e-18 96.3 57 64.9
Glyma.11G061100 Glycine max HOM05D007587 ORTHO05D009657 2.3e-18 95.5 60 65.0
Potri.005G130750 Populus trichocarpa HOM05D007587 ORTHO05D009657 2.3e-18 95.5 58 62.1
FAN26G0670 Fragaria x ananassa HOM05D007587 ORTHO05D009657 3.1e-18 95.1 45 75.6
QL06p044263 Quercus lobata HOM05D007587 ORTHO05D009657 5.2e-18 94.4 62 56.5
Glyma.02G061500 Glycine max HOM05D007587 ORTHO05D009657 8.9e-18 93.6 59 59.3
Nitab4.5_0005594g0030 Nicotiana tabacum HOM05D007587 ORTHO05D009657 8.9e-18 93.6 74 51.4
Psat2g163680 Pisum sativum HOM05D007587 ORTHO05D009657 8.9e-18 93.6 75 52.0
Lj7C15T6 Lonicera japonica HOM05D007587 ORTHO05D009657 1.2e-17 93.2 62 61.3
Phvul.002G023800 Phaseolus vulgaris HOM05D007587 ORTHO05D009657 1.5e-17 92.8 60 58.3
Solyc02g090080.1 Solanum lycopersicum HOM05D007587 ORTHO05D009657 2.0e-17 92.4 56 62.5
Glyma.19G074100 Glycine max HOM05D007587 ORTHO05D009657 2.6e-17 92.0 54 63.0
ClCG02G013040 Citrullus lanatus HOM05D007587 ORTHO05D009657 4.4e-17 91.3 69 50.7
Potri.007G034000 Populus trichocarpa HOM05D007587 ORTHO05D009657 4.4e-17 91.3 57 63.2
Psat0s261g0120 Pisum sativum HOM05D007587 ORTHO05D009657 7.6e-17 90.5 53 62.3
ECA238G1538 Erigeron canadensis HOM05D003002 ORTHO05D002276 9.9e-17 90.1 53 60.4
TPR.G29850 Trifolium pratense HOM05D007587 ORTHO05D009657 9.9e-17 90.1 53 62.3
Lj2g0021293 Lotus japonicus HOM05D007587 ORTHO05D009657 3.7e-16 88.2 61 55.7
Lsat_1_v5_gn_3_93981 Lactuca sativa HOM05D007587 ORTHO05D009657 4.9e-16 87.8 47 68.1
Atru.chr13.897 Acer truncatum HOM05D007587 ORTHO05D009657 1.1e-15 86.7 74 51.4
arahy.Tifrunner.gnm1.ann1.986LRW Arachis hypogaea HOM05D007587 ORTHO05D009657 1.1e-15 86.7 59 59.3
arahy.Tifrunner.gnm1.ann1.JQT6QK Arachis hypogaea HOM05D007587 ORTHO05D009657 1.1e-15 86.7 59 59.3
Os12g0596101 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 1.1e-15 86.7 56 57.1
GSVIVG01034787001 Vitis vinifera HOM05D007587 ORTHO05D009657 2.4e-15 85.5 51 56.9
Lsat_1_v5_gn_2_87241 Lactuca sativa HOM05D007587 ORTHO05D009657 3.2e-15 85.1 45 66.7
Zm00001eb135300 Zea mays HOM05D007587 ORTHO05D009657 3.2e-15 85.1 48 62.5
CsaV3_2G017120 Cucumis sativus L. HOM05D007587 ORTHO05D009657 7.1e-15 84.0 59 52.5
AagrBONN_evm.TU.Sc2ySwM_117.169 Anthoceros agrestis HOM05D007587 ORTHO05D009657 2.1e-14 82.4 62 53.2
Potri.005G150300 Populus trichocarpa HOM05D007587 ORTHO05D009657 1.0e-13 80.1 43 62.8
Manes.18G051550 Manihot esculenta HOM05D007587 ORTHO05D009657 2.3e-13 79.0 43 60.5
Mapoly0026s0006 Marchantia polymorpha HOM05D007587 ORTHO05D009657 3.9e-13 78.2 62 50.0
Nn5g27361 Nelumbo nucifera HOM05D007587 ORTHO05D009657 3.9e-13 78.2 68 47.1
Nitab4.5_0015343g0010 Nicotiana tabacum HOM05D007587 ORTHO05D009657 3.9e-13 78.2 43 58.1
CAN.G416.39 Capsicum annuum HOM05D007587 ORTHO05D009657 5.1e-13 77.8 43 58.1
CSS0045179 Camellia sinensis var. sinensis HOM05D007587 ORTHO05D009657 8.6e-13 77.0 43 55.8
MBI16_g05021_MAGBIO Magnolia biondii HOM05D007587 ORTHO05D009657 1.1e-12 76.6 72 40.3
vmacro04609 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 1.1e-12 76.6 53 49.1
CiPaw.15G043600 Carya illinoinensis HOM05D007587 ORTHO05D009657 1.5e-12 76.3 64 43.8
QL02p001961 Quercus lobata HOM05D007587 ORTHO05D009657 1.5e-12 76.3 43 58.1
PGSC0003DMG400004952 Solanum tuberosum HOM05D007587 ORTHO05D009657 1.5e-12 76.3 43 58.1
Os03g0673700 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 1.9e-12 75.9 63 46.0
Sed0017528 Sechium edule HOM05D007587 ORTHO05D009657 1.9e-12 75.9 54 53.7
vmacro04607 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 3.3e-12 75.1 53 47.2
Cc10_g07830 Coffea canephora HOM05D007587 ORTHO05D009657 4.3e-12 74.7 43 60.5
Thecc.08G082100 Theobroma cacao HOM05D007587 ORTHO05D009657 4.3e-12 74.7 64 43.8
TAR381G0827 Trochodendron aralioides HOM05D007587 ORTHO05D009657 4.3e-12 74.7 64 43.8
vmacro04608 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 4.3e-12 74.7 53 49.1
Cfa017911 Carpinus fangiana HOM05D007587 ORTHO05D009657 5.6e-12 74.3 57 49.1
CDE04G0885 Ceratophyllum demersum HOM05D007587 ORTHO05D009657 5.6e-12 74.3 64 42.2
MBI16_g05020_MAGBIO Magnolia biondii HOM05D007587 ORTHO05D009657 5.6e-12 74.3 45 55.6
SalBow7G1850 Salvia bowleyana HOM05D007587 ORTHO05D009657 7.3e-12 73.9 43 53.5
Zm00001eb052110 Zea mays HOM05D007587 ORTHO05D009657 9.6e-12 73.6 64 46.9
CiPaw.15G043500 Carya illinoinensis HOM05D007587 ORTHO05D009657 1.2e-11 73.2 62 46.8
Nn5g27362 Nelumbo nucifera HOM05D007587 ORTHO05D009657 1.2e-11 73.2 64 42.2
Hma1.2p1_2651F.1_g326150 Hydrangea macrophylla HOM05D007587 ORTHO05D009657 1.6e-11 72.8 43 53.5
Gohir.A01G124700 Gossypium hirsutum HOM05D007587 ORTHO05D009657 2.1e-11 72.4 64 43.8
Gohir.D01G112300 Gossypium hirsutum HOM05D007587 ORTHO05D009657 2.1e-11 72.4 64 43.8
Gorai.002G137200 Gossypium raimondii HOM05D007587 ORTHO05D009657 2.1e-11 72.4 64 43.8
Migut.C00432 Erythranthe guttata HOM05D007587 ORTHO05D009657 2.8e-11 72.0 66 42.4
Migut.O00867 Erythranthe guttata HOM05D007587 ORTHO05D009657 2.8e-11 72.0 66 42.4
CDE06G1347 Ceratophyllum demersum HOM05D007587 ORTHO05D009657 3.6e-11 71.6 43 53.5
Nn4g24320 Nelumbo nucifera HOM05D007587 ORTHO05D009657 3.6e-11 71.6 61 47.5
Os03g0673400 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 3.6e-11 71.6 47 53.2
Actinidia29637 Actinidia chinensis HOM05D007587 ORTHO05D009657 4.7e-11 71.2 45 46.7
COL.COLO4_35374 Corchorus olitorius HOM05D007587 ORTHO05D009657 4.7e-11 71.2 53 49.1
Rhsim07G0216100 Rhododendron simsii HOM05D007587 ORTHO05D009657 4.7e-11 71.2 49 49.0
Rhsim07G0216200 Rhododendron simsii HOM05D007587 ORTHO05D009657 4.7e-11 71.2 43 53.5
Pp3c20_19960 Physcomitrium patens HOM05D007587 ORTHO05D009657 1.1e-10 70.1 57 47.4
Nn5g27360 Nelumbo nucifera HOM05D007587 ORTHO05D009657 2.4e-10 68.9 58 44.8
CBR_g28808 Chara braunii HOM05D007587 ORTHO05D009657 3.4e-09 65.1 42 47.6
CiPaw.01G029300 Carya illinoinensis HOM05D007587 ORTHO05D009657 1.7e-08 62.8 34 70.6
Pp3c24_89 Physcomitrium patens HOM05D007587 ORTHO05D009657 2.9e-08 62.0 52 46.2
Pp3c19_1061 Physcomitrium patens HOM05D007587 ORTHO05D009657 2.4e-07 58.9 45 51.1
Pp3c19_1062 Physcomitrium patens HOM05D007587 ORTHO05D009657 7.1e-07 57.4 44 50.0


User provided reference genes

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