Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G1093 Trochodendron aralioides HOM05D004637 ORTHO05D005320 1.2e-129 466.5 236 100.0
Dinv35927 Davidia involucrata HOM05D004637 ORTHO05D005320 6.0e-116 421.0 236 88.6
Dinv39271 Davidia involucrata HOM05D004637 ORTHO05D005320 1.5e-114 416.4 236 88.1
Actinidia08272 Actinidia chinensis HOM05D004637 ORTHO05D005320 8.1e-113 410.6 236 85.6
Hma1.2p1_0360F.1_g135900 Hydrangea macrophylla HOM05D004637 ORTHO05D005320 1.8e-112 409.5 236 85.2
CSS0035210 Camellia sinensis var. sinensis HOM05D004637 ORTHO05D005320 6.9e-112 407.5 236 85.6
GSVIVG01009436001 Vitis vinifera HOM05D004637 ORTHO05D005320 4.4e-111 404.8 236 83.5
Nn5g30394 Nelumbo nucifera HOM05D004637 ORTHO05D005320 5.8e-111 404.4 236 84.3
Manes.05G177100 Manihot esculenta HOM05D004637 ORTHO05D005320 1.9e-109 399.4 233 84.1
Eucgr.F00183 Eucalyptus grandis HOM05D004637 ORTHO05D005320 4.2e-109 398.3 236 83.5
Thecc.08G001300 Theobroma cacao HOM05D004637 ORTHO05D005320 4.2e-109 398.3 236 83.9
Atru.chr13.748 Acer truncatum HOM05D004637 ORTHO05D005320 5.4e-109 397.9 236 83.5
Potri.014G023800 Populus trichocarpa HOM05D004637 ORTHO05D005320 1.2e-108 396.7 236 81.8
PSO170G3952 Papaver somniferum HOM05D004637 ORTHO05D005320 1.6e-108 396.4 236 81.4
PSO210G5934 Papaver somniferum HOM05D004637 ORTHO05D005320 4.6e-108 394.8 236 80.5
Sed0017846 Sechium edule HOM05D004637 ORTHO05D005320 1.0e-107 393.7 236 79.2
MSTRG.25070 Avicennia marina HOM05D004637 ORTHO05D005320 2.3e-107 392.5 236 82.2
Migut.N02728 Erythranthe guttata HOM05D004637 ORTHO05D005320 2.3e-107 392.5 236 81.8
THA.LOC104824981 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 8.7e-107 390.6 236 80.5
QL02p003978 Quercus lobata HOM05D004637 ORTHO05D005320 7.3e-106 387.5 233 81.1
MELO3C010837.2 Cucumis melo HOM05D004637 ORTHO05D005320 1.3e-105 386.7 236 79.2
CsaV3_2G026470 Cucumis sativus L. HOM05D004637 ORTHO05D005320 1.3e-105 386.7 236 79.2
CiPaw.15G052200 Carya illinoinensis HOM05D004637 ORTHO05D005320 1.6e-105 386.3 236 82.2
Prupe.1G430800 Prunus persica HOM05D004637 ORTHO05D005320 1.6e-105 386.3 238 82.4
Cc10_g04860 Coffea canephora HOM05D004637 ORTHO05D005320 6.2e-105 384.4 235 79.6
Gohir.A05G205600 Gossypium hirsutum HOM05D004637 ORTHO05D005320 3.1e-104 382.1 236 79.7
Gohir.D05G208900 Gossypium hirsutum HOM05D004637 ORTHO05D005320 4.0e-104 381.7 236 79.2
unitig_26.g9809 Utricularia gibba HOM05D004637 ORTHO05D005320 4.0e-104 381.7 236 79.7
Sabra14G0016200 Salix brachista HOM05D004637 ORTHO05D005320 5.3e-104 381.3 282 69.9
TWI36G0292 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 6.9e-104 380.9 236 78.0
Lsat_1_v5_gn_1_22460 Lactuca sativa HOM05D004637 ORTHO05D005320 3.4e-103 378.6 231 79.7
Glyma.17G238800 Glycine max HOM05D004637 ORTHO05D005320 9.9e-103 377.1 236 78.8
CAN.G1194.20 Capsicum annuum HOM05D004637 ORTHO05D005320 2.2e-102 375.9 236 76.7
Gorai.009G215300 Gossypium raimondii HOM05D004637 ORTHO05D005320 2.2e-102 375.9 237 78.9
PGSC0003DMG400015434 Solanum tuberosum HOM05D004637 ORTHO05D005320 2.9e-102 375.6 236 78.0
Medtr1g018800 Medicago truncatula HOM05D004637 ORTHO05D005320 3.8e-102 375.2 236 79.2
Sopen12g030560 Solanum pennellii HOM05D004637 ORTHO05D005320 4.9e-102 374.8 236 77.5
Glyma.14G085900 Glycine max HOM05D004637 ORTHO05D005320 6.4e-102 374.4 236 78.0
HanXRQChr10g0309661 Helianthus annuus HOM05D004637 ORTHO05D005320 6.4e-102 374.4 233 78.5
Lj5g0011390 Lotus japonicus HOM05D004637 ORTHO05D005320 1.1e-101 373.6 236 79.2
TPR.G3787 Trifolium pratense HOM05D004637 ORTHO05D005320 1.4e-101 373.2 236 77.5
Solyc12g088660.2 Solanum lycopersicum HOM05D004637 ORTHO05D005320 4.2e-101 371.7 236 76.7
TWI56G1297 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 4.2e-101 371.7 236 75.8
ClCG08G016150 Citrullus lanatus HOM05D004637 ORTHO05D005320 1.2e-100 370.2 236 78.0
MD15G1077400 Malus domestica HOM05D004637 ORTHO05D005320 1.6e-100 369.8 238 77.3
Ah.08g212480 Amaranthus hybridus HOM05D004637 ORTHO05D005320 2.1e-100 369.4 260 70.4
AT4G07390 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 2.1e-100 369.4 236 75.4
Carub.0006s2649 Capsella rubella HOM05D004637 ORTHO05D005320 3.5e-100 368.6 236 75.0
AL6G41290 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 4.6e-100 368.2 236 75.0
Thhalv10028929m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 6.0e-100 367.9 236 75.8
PGR031G3707 Punica granatum HOM05D004637 ORTHO05D005320 6.0e-100 367.9 234 77.8
Os07g0479200 Oryza sativa ssp. japonica HOM05D004637 ORTHO05D005320 7.9e-100 367.5 233 75.5
BraA03t12001Z Brassica rapa HOM05D004637 ORTHO05D005320 1.0e-99 367.1 236 76.3
CANSAT54G2334 Cannabis sativa HOM05D004637 ORTHO05D005320 1.0e-99 367.1 240 75.8
Lj4A64T29 Lonicera japonica HOM05D004637 ORTHO05D005320 1.0e-99 367.1 303 64.0
CiPaw.16G038000 Carya illinoinensis HOM05D004637 ORTHO05D005320 1.8e-99 366.3 231 77.5
BcaB01g02883 Brassica carinata HOM05D004637 ORTHO05D005320 2.3e-99 365.9 236 76.3
FvH4_2g33730 Fragaria vesca HOM05D004637 ORTHO05D005320 2.3e-99 365.9 238 75.6
A03p27890 Brassica napus HOM05D004637 ORTHO05D005320 3.0e-99 365.5 236 75.8
C03p33670 Brassica napus HOM05D004637 ORTHO05D005320 3.9e-99 365.2 233 76.8
BolC3t15687H Brassica oleracea HOM05D004637 ORTHO05D005320 3.9e-99 365.2 233 76.8
THA.LOC104825764 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 5.1e-99 364.8 236 73.7
MD08G1093700 Malus domestica HOM05D004637 ORTHO05D005320 6.7e-99 364.4 238 77.3
CARHR288440 Cardamine hirsuta HOM05D004637 ORTHO05D005320 1.5e-98 363.2 236 74.2
Phvul.001G024600 Phaseolus vulgaris HOM05D004637 ORTHO05D005320 1.5e-98 363.2 236 76.3
EL10As7g23788 Beta vulgaris HOM05D004637 ORTHO05D005320 5.6e-98 361.3 272 68.0
Sp6g10610 Schrenkiella parvula HOM05D004637 ORTHO05D005320 5.6e-98 361.3 232 75.9
Aa31LG8G3140 Aethionema arabicum HOM05D004637 ORTHO05D005320 2.1e-97 359.4 236 74.2
HPP92_003482 Vanilla planifolia HOM05D004637 ORTHO05D005320 2.1e-97 359.4 236 70.3
Eucgr.F02306 Eucalyptus grandis HOM05D004637 ORTHO05D005320 8.1e-97 357.5 236 72.5
RcHm_v2.0_Chr6g0308821 Rosa chinensis HOM05D004637 ORTHO05D005320 2.4e-96 355.9 238 74.8
Actinidia38079 Actinidia chinensis HOM05D004637 ORTHO05D005320 2.0e-95 352.8 205 86.3
Aqoxy5G01163 Aquilegia oxysepala HOM05D004637 ORTHO05D005320 2.6e-95 352.4 204 85.8
TAR628G0069 Trochodendron aralioides HOM05D004637 ORTHO05D005320 1.0e-94 350.5 204 84.8
Oeu045704.1 Olea europaea HOM05D004637 ORTHO05D005320 2.2e-94 349.4 201 84.6
TAR628G0193 Trochodendron aralioides HOM05D004637 ORTHO05D005320 2.2e-94 349.4 220 80.0
CDE01G0812 Ceratophyllum demersum HOM05D004637 ORTHO05D005320 6.5e-94 347.8 231 76.6
BcaC01g04795 Brassica carinata HOM05D004637 ORTHO05D005320 7.1e-93 344.4 226 75.2
Ciclev10002344m.g Citrus clementina HOM05D004637 ORTHO05D005320 1.6e-92 343.2 236 69.5
Duzib093G0653 Durio zibethinus HOM05D004637 ORTHO05D005320 2.1e-92 342.8 236 74.6
Rhsim07G0225500 Rhododendron simsii HOM05D004637 ORTHO05D005320 7.9e-92 340.9 264 68.9
Cfa018057 Carpinus fangiana HOM05D004637 ORTHO05D005320 5.1e-91 338.2 216 78.2
RcHm_v2.0_Chr0c32g0501551 Rosa chinensis HOM05D004637 ORTHO05D005320 3.3e-90 335.5 239 70.7
Psat6g015000 Pisum sativum HOM05D004637 ORTHO05D005320 9.6e-90 334.0 206 79.6
AL8G35940 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 1.1e-88 330.5 235 67.7
Zm00001eb104960 Zea mays HOM05D004637 ORTHO05D005320 1.1e-88 330.5 206 77.2
Thhalv10015267m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 4.1e-88 328.6 240 66.2
SEGI_04928 Sequoiadendron giganteum HOM05D004637 ORTHO05D005320 2.0e-87 326.2 236 65.7
Nitab4.5_0006004g0010 Nicotiana tabacum HOM05D004637 ORTHO05D005320 2.6e-87 325.9 233 70.8
arahy.Tifrunner.gnm1.ann1.RG91LC Arachis hypogaea HOM05D004637 ORTHO05D005320 3.4e-87 325.5 237 70.9
arahy.Tifrunner.gnm1.ann1.UI0UDP Arachis hypogaea HOM05D004637 ORTHO05D005320 3.4e-87 325.5 237 70.9
ECA247G2514 Erigeron canadensis HOM05D004637 ORTHO05D005320 4.5e-87 325.1 199 79.9
VMungo0647G2267 Vigna mungo HOM05D004637 ORTHO05D005320 4.5e-87 325.1 203 78.3
Carub.0008s2014 Capsella rubella HOM05D004637 ORTHO05D005320 7.6e-87 324.3 235 66.0
CARHR285840 Cardamine hirsuta HOM05D004637 ORTHO05D005320 1.7e-86 323.2 237 66.2
PGR083G2827 Punica granatum HOM05D004637 ORTHO05D005320 2.1e-84 316.2 196 77.0
Sc02g0007520 Simmondsia chinensis HOM05D004637 ORTHO05D005320 2.1e-84 316.2 187 81.3
FAN15G1438 Fragaria x ananassa HOM05D004637 ORTHO05D005320 3.0e-83 312.4 221 70.1
FAN27G2280 Fragaria x ananassa HOM05D004637 ORTHO05D005320 8.7e-83 310.8 228 68.9
Nitab4.5_0006486g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 1.8e-80 303.1 229 66.8
BcaC03g14011 Brassica carinata HOM05D004637 ORTHO05D005320 2.4e-80 302.8 235 62.1
BolC2t07347H Brassica oleracea HOM05D004637 ORTHO05D005320 2.4e-80 302.8 235 62.1
A02p07110 Brassica napus HOM05D004637 ORTHO05D005320 4.1e-80 302.0 235 63.0
C02p12470 Brassica napus HOM05D004637 ORTHO05D005320 4.1e-80 302.0 235 62.1
BraA02t05792Z Brassica rapa HOM05D004637 ORTHO05D005320 5.3e-80 301.6 235 62.6
BcaB05g22509 Brassica carinata HOM05D004637 ORTHO05D005320 3.4e-79 298.9 239 61.9
Peaxi162Scf01087g00125 Petunia axillaris HOM05D004637 ORTHO05D005320 1.3e-78 297.0 188 78.7
Nitab4.5_0004339g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 1.1e-77 293.9 208 72.6
Oeu037612.1 Olea europaea HOM05D004637 ORTHO05D005320 1.1e-77 293.9 166 85.5
Manes.18G041200 Manihot esculenta HOM05D004637 ORTHO05D005320 4.2e-77 292.0 167 84.4
SMO365G0080 Selaginella moellendorffii HOM05D004637 ORTHO05D005320 8.8e-75 284.3 231 56.7
HPP92_026880 Vanilla planifolia HOM05D004637 ORTHO05D005320 7.4e-74 281.2 188 70.2
BolC3t13818H Brassica oleracea HOM05D004637 ORTHO05D005320 3.1e-72 275.8 226 58.8
Mapoly0040s0013 Marchantia polymorpha HOM05D004637 ORTHO05D005320 3.1e-72 275.8 228 57.0
Haze_18072 Corylus avellana HOM05D004637 ORTHO05D005320 4.1e-72 275.4 167 80.2
Pp3c3_8350 Physcomitrium patens HOM05D004637 ORTHO05D005320 9.1e-72 274.2 239 55.6
FAN20G0860 Fragaria x ananassa HOM05D004637 ORTHO05D005320 1.2e-71 273.9 233 61.8
Nitab4.5_0010118g0060 Nicotiana tabacum HOM05D004637 ORTHO05D005320 7.2e-69 264.6 237 62.4
vmacro21608 Vaccinium macrocarpon HOM05D004637 ORTHO05D005320 7.9e-68 261.2 151 83.4
Pp3c4_22670 Physcomitrium patens HOM05D004637 ORTHO05D005320 3.0e-67 259.2 236 52.1
CBR_g40794 Chara braunii HOM05D004637 ORTHO05D005320 1.1e-64 250.8 219 57.1
Peaxi162Scf00160g00034 Petunia axillaris HOM05D004637 ORTHO05D005320 3.5e-63 245.7 147 78.9
FAN24G1748 Fragaria x ananassa HOM05D004637 ORTHO05D005320 2.2e-62 243.0 204 63.2
CBR_g8228 Chara braunii HOM05D004637 ORTHO05D005320 8.5e-62 241.1 226 54.9
AagrBONN_evm.TU.Sc2ySwM_344.2883 Anthoceros agrestis HOM05D004637 ORTHO05D005320 1.2e-52 210.7 169 57.4
SalBow7G4009 Salvia bowleyana HOM05D004637 ORTHO05D005320 2.1e-52 209.9 126 81.7
Sp6g21160 Schrenkiella parvula HOM05D004637 ORTHO05D005320 3.4e-50 202.6 135 72.6
AT5G59470 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 7.5e-50 201.4 135 71.1
AUR62002897 Chenopodium quinoa HOM05D004637 ORTHO05D005320 1.8e-48 196.8 236 48.3
Hund04212 Selenicereus undatus HOM05D004637 ORTHO05D005320 2.9e-46 189.5 236 47.0
BcaC01g04787 Brassica carinata HOM05D004637 ORTHO05D005320 1.6e-44 183.7 233 48.5
Cpa.g.sc21.155 Carica papaya HOM05D004637 ORTHO05D005320 2.3e-43 179.9 104 84.6
Lalb_Chr22g0354931 Lupinus albus HOM05D004637 ORTHO05D005320 5.2e-43 178.7 112 77.7
AUR62035253 Chenopodium quinoa HOM05D004637 ORTHO05D005320 1.4e-40 170.6 126 67.5
QL07p047618 Quercus lobata HOM05D004637 ORTHO05D005320 3.5e-39 166.0 102 79.4
Lalb_Chr22g0354941 Lupinus albus HOM05D004637 ORTHO05D005320 7.2e-37 158.3 105 75.2
SGA_v2.0_scaffold588G53062 Striga asiatica HOM05D004637 ORTHO05D005320 6.1e-36 155.2 263 39.2
BcaB01g04583 Brassica carinata HOM05D004637 ORTHO05D005320 1.2e-31 141.0 154 45.5
PRCOL_00005305 Prasinoderma coloniale HOM05D004637 ORTHO05D005320 1.6e-31 140.6 212 38.7
SGA_v2.0_scaffold137G35065 Striga asiatica HOM05D004637 ORTHO05D005320 2.3e-30 136.7 76 80.3
Cre17.g722500 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 4.7e-28 129.0 215 34.9
MCO13G491 Micromonas commoda HOM05D004637 ORTHO05D005320 1.6e-23 114.0 221 33.9
MCO13G508 Micromonas commoda HOM05D004637 ORTHO05D005320 1.6e-23 114.0 221 33.9
Cc02_g27600 Coffea canephora HOM05D004637 ORTHO05D005320 7.8e-23 111.7 74 71.6
QL11p041834 Quercus lobata HOM05D001716 ORTHO05D004234 1.5e-21 107.5 98 63.3
Peaxi162Scf00160g00024 Petunia axillaris HOM05D004637 ORTHO05D005320 2.1e-20 103.6 65 76.9
Cre06.g261300 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 1.7e-17 94.0 198 31.8
COL.COLO4_10117 Corchorus olitorius HOM05D004637 ORTHO05D005320 1.0e-14 84.7 49 77.6
RcHm_v2.0_Chr1g0356881 Rosa chinensis HOM05D004637 ORTHO05D005320 1.0e-14 84.7 51 80.4
Peaxi162Scf00160g00035 Petunia axillaris HOM05D004637 ORTHO05D005320 5.1e-14 82.4 53 71.7
Pp3c10_370 Physcomitrium patens HOM05D004637 ORTHO05D005320 2.5e-13 80.1 91 47.3
Ca_13257_v3 Cicer arietinum L. HOM05D004637 ORTHO05D005320 2.1e-12 77.0 52 67.3
BcaC01g06520 Brassica carinata HOM05D004637 ORTHO05D005320 2.3e-11 73.6 49 67.3
ATR0706G173 Amborella trichopoda HOM05D004637 ORTHO05D005320 2.6e-10 70.1 56 60.7
HPP92_014526 Vanilla planifolia HOM05D004637 ORTHO05D005320 9.9e-10 68.2 48 62.5
BcaB02g11171 Brassica carinata HOM05D037786 ORTHO05D091371 4.1e-08 62.8 50 54.0
BcaB04g17066 Brassica carinata HOM05D037786 ORTHO05D005320 7.8e-07 58.5 46 65.2
arahy.Tifrunner.gnm1.ann1.FL5MRT Arachis hypogaea HOM05D017492 ORTHO05D005320 8.6e-06 55.1 70 50.0


User provided reference genes

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