Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G1009 Trochodendron aralioides HOM05D004272 ORTHO05D005020 1.4e-185 652.9 346 100.0
GSVIVG01034890001 Vitis vinifera HOM05D004272 ORTHO05D005020 1.6e-133 479.9 316 75.6
Dinv12903 Davidia involucrata HOM05D004272 ORTHO05D005020 1.4e-132 476.9 343 71.4
Hma1.2p1_0510F.1_g168790 Hydrangea macrophylla HOM05D004272 ORTHO05D005020 4.5e-128 461.8 292 76.7
CSS0015299 Camellia sinensis var. sinensis HOM05D004272 ORTHO05D005020 3.2e-126 455.7 332 70.2
Manes.18G099100 Manihot esculenta HOM05D004272 ORTHO05D005020 2.7e-125 452.6 290 73.4
MD10G1045300 Malus domestica HOM05D004272 ORTHO05D005020 6.1e-125 451.4 298 74.2
Oeu030010.1 Olea europaea HOM05D004272 ORTHO05D005020 7.9e-125 451.1 298 75.2
Ciclev10001727m.g Citrus clementina HOM05D004272 ORTHO05D005020 1.4e-124 450.3 286 76.2
MD05G1039700 Malus domestica HOM05D004272 ORTHO05D005020 2.3e-124 449.5 285 75.1
QL02p034274 Quercus lobata HOM05D004272 ORTHO05D005020 2.3e-124 449.5 298 73.2
Prupe.8G052200 Prunus persica HOM05D004272 ORTHO05D005020 8.8e-124 447.6 290 73.4
Sabra13G0097600 Salix brachista HOM05D004272 ORTHO05D005020 8.8e-124 447.6 329 67.5
Cpa.g.sc64.134 Carica papaya HOM05D004272 ORTHO05D005020 1.5e-123 446.8 321 69.8
Eucgr.F04145 Eucalyptus grandis HOM05D004272 ORTHO05D005020 1.5e-123 446.8 306 72.2
CiPaw.15G083400 Carya illinoinensis HOM05D004272 ORTHO05D005020 3.3e-123 445.7 297 72.4
Haze_17897 Corylus avellana HOM05D004272 ORTHO05D005020 1.3e-122 443.7 297 72.4
Potri.013G115400 Populus trichocarpa HOM05D004272 ORTHO05D005020 1.3e-122 443.7 290 73.1
CANSAT25G2208 Cannabis sativa HOM05D004272 ORTHO05D005020 2.8e-122 442.6 285 72.6
Oeu004773.1 Olea europaea HOM05D004272 ORTHO05D005020 6.3e-122 441.4 326 68.1
Actinidia02597 Actinidia chinensis HOM05D004272 ORTHO05D005020 1.1e-121 440.7 298 74.5
Gohir.A09G116800 Gossypium hirsutum HOM05D004272 ORTHO05D005020 1.1e-121 440.7 290 71.0
CiPaw.16G063800 Carya illinoinensis HOM05D004272 ORTHO05D005020 5.3e-121 438.3 298 71.1
THA.LOC104800104 Tarenaya hassleriana HOM05D004272 ORTHO05D005020 6.9e-121 438.0 290 71.7
VMungo0720G1438 Vigna mungo HOM05D004272 ORTHO05D005020 1.2e-120 437.2 297 69.0
Atru.chr13.1851 Acer truncatum HOM05D004272 ORTHO05D005020 4.5e-120 435.3 331 66.8
Aqoxy6G00139 Aquilegia oxysepala HOM05D004272 ORTHO05D005020 4.5e-120 435.3 285 74.7
Rhsim11G0061700 Rhododendron simsii HOM05D004272 ORTHO05D005020 4.5e-120 435.3 344 67.2
Rhsim11G0063200 Rhododendron simsii HOM05D004272 ORTHO05D005020 4.5e-120 435.3 344 67.2
Cc00_g04120 Coffea canephora HOM05D004272 ORTHO05D005020 5.9e-120 434.9 299 73.6
Gorai.006G131400 Gossypium raimondii HOM05D004272 ORTHO05D005020 1.0e-119 434.1 290 70.3
Sp5g26920 Schrenkiella parvula HOM05D004272 ORTHO05D005020 1.3e-119 433.7 291 71.8
SpUn0020_0060 Schrenkiella parvula HOM05D004272 ORTHO05D005020 1.3e-119 433.7 291 71.8
FAN27G2909 Fragaria x ananassa HOM05D004272 ORTHO05D005020 3.8e-119 432.2 289 71.6
Rhsim06G0099300 Rhododendron simsii HOM05D004272 ORTHO05D005020 3.8e-119 432.2 339 65.8
FAN20G0830 Fragaria x ananassa HOM05D004272 ORTHO05D005020 6.5e-119 431.4 298 70.8
Phvul.007G087900 Phaseolus vulgaris HOM05D004272 ORTHO05D005020 6.5e-119 431.4 297 69.0
Thecc.08G200200 Theobroma cacao HOM05D004272 ORTHO05D005020 6.5e-119 431.4 298 69.8
Ca_10628_v3 Cicer arietinum L. HOM05D004272 ORTHO05D005020 1.1e-118 430.6 298 70.1
FvH4_2g12360 Fragaria vesca HOM05D004272 ORTHO05D005020 1.1e-118 430.6 298 70.1
FAN24G2414 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.1e-118 430.6 298 70.1
Gohir.D09G113700 Gossypium hirsutum HOM05D004272 ORTHO05D005020 1.1e-118 430.6 290 70.0
Nitab4.5_0006059g0040 Nicotiana tabacum HOM05D004272 ORTHO05D005020 5.5e-118 428.3 299 71.6
arahy.Tifrunner.gnm1.ann1.6Q1IL7 Arachis hypogaea HOM05D004272 ORTHO05D005020 7.2e-118 427.9 318 66.4
Medtr1g096990 Medicago truncatula HOM05D004272 ORTHO05D005020 1.2e-117 427.2 298 68.5
arahy.Tifrunner.gnm1.ann1.CBRY2G Arachis hypogaea HOM05D004272 ORTHO05D005020 1.6e-117 426.8 318 66.0
Carub.0002s1862 Capsella rubella HOM05D004272 ORTHO05D005020 2.1e-117 426.4 290 69.7
RcHm_v2.0_Chr6g0272381 Rosa chinensis HOM05D004272 ORTHO05D005020 2.7e-117 426.0 298 69.8
AL2G31440 Arabidopsis lyrata HOM05D004272 ORTHO05D005020 3.6e-117 425.6 290 69.7
Lj5g0022070 Lotus japonicus HOM05D004272 ORTHO05D005020 8.0e-117 424.5 298 69.8
Glyma.10G218100 Glycine max HOM05D004272 ORTHO05D005020 1.8e-116 423.3 298 68.1
TPR.G15693 Trifolium pratense HOM05D004272 ORTHO05D005020 3.0e-116 422.5 285 69.8
DCAR_010068 Daucus carota HOM05D004272 ORTHO05D005020 5.2e-116 421.8 294 69.7
Glyma.20G173700 Glycine max HOM05D004272 ORTHO05D005020 5.2e-116 421.8 298 69.8
vmacro12508 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 5.2e-116 421.8 305 68.2
Aa31LG4G8760 Aethionema arabicum HOM05D004272 ORTHO05D005020 6.7e-116 421.4 290 69.3
Migut.N03339 Erythranthe guttata HOM05D004272 ORTHO05D005020 2.6e-115 419.5 296 71.6
SalBow6G0059 Salvia bowleyana HOM05D004272 ORTHO05D005020 2.6e-115 419.5 282 74.1
SalBow6G4901 Salvia bowleyana HOM05D004272 ORTHO05D005020 2.6e-115 419.5 282 74.1
PSO170G2262 Papaver somniferum HOM05D004272 ORTHO05D005020 3.3e-115 419.1 329 66.3
MELO3C018159.2 Cucumis melo HOM05D004272 ORTHO05D005020 4.4e-115 418.7 297 68.4
BcaC08g46618 Brassica carinata HOM05D004272 ORTHO05D005020 5.7e-115 418.3 294 70.1
Peaxi162Scf00268g01426 Petunia axillaris HOM05D004272 ORTHO05D005020 5.7e-115 418.3 299 68.9
Duzib116G0407 Durio zibethinus HOM05D004272 ORTHO05D005020 2.2e-114 416.4 337 62.0
Solyc11g016990.3 Solanum lycopersicum HOM05D004272 ORTHO05D005020 8.2e-114 414.5 299 70.6
Sc01g0001660 Simmondsia chinensis HOM05D004272 ORTHO05D005020 1.1e-113 414.1 285 71.2
AT1G71860 Arabidopsis thaliana HOM05D004272 ORTHO05D005020 2.4e-113 412.9 290 67.9
C06p45930 Brassica napus HOM05D004272 ORTHO05D005020 2.4e-113 412.9 293 69.6
Thhalv10018624m.g Eutrema salsugineum HOM05D004272 ORTHO05D005020 2.4e-113 412.9 291 68.4
BcaC08g46620 Brassica carinata HOM05D004272 ORTHO05D005020 3.1e-113 412.5 293 69.3
BolC6t39646H Brassica oleracea HOM05D004272 ORTHO05D005020 3.1e-113 412.5 293 69.3
Lalb_Chr06g0161911 Lupinus albus HOM05D004272 ORTHO05D005020 4.1e-113 412.1 298 66.8
Sopen11g008950 Solanum pennellii HOM05D004272 ORTHO05D005020 4.1e-113 412.1 299 70.6
BraA07t31367Z Brassica rapa HOM05D004272 ORTHO05D005020 3.5e-112 409.1 294 68.7
A07p38020 Brassica napus HOM05D004272 ORTHO05D005020 5.9e-112 408.3 294 68.4
EL10Ac1g00062 Beta vulgaris HOM05D004272 ORTHO05D005020 7.7e-112 407.9 289 69.6
ATR0687G002 Amborella trichopoda HOM05D004272 ORTHO05D005020 1.7e-111 406.8 285 68.4
Sed0022323 Sechium edule HOM05D004272 ORTHO05D005020 2.9e-111 406.0 297 67.0
Lj7C302G8 Lonicera japonica HOM05D004272 ORTHO05D005020 8.5e-111 404.4 355 60.8
Sopen06g023970 Solanum pennellii HOM05D004272 ORTHO05D005020 2.5e-110 402.9 299 68.9
Solyc06g065480.4 Solanum lycopersicum HOM05D004272 ORTHO05D005020 3.2e-110 402.5 299 68.6
CsaV3_7G024250 Cucumis sativus L. HOM05D004272 ORTHO05D005020 9.4e-110 401.0 297 66.7
Hund27072 Selenicereus undatus HOM05D004272 ORTHO05D005020 3.3e-107 392.5 285 68.4
ClCG09G010370 Citrullus lanatus HOM05D004272 ORTHO05D005020 1.8e-105 386.7 289 65.4
CAN.G199.25 Capsicum annuum HOM05D004272 ORTHO05D005020 5.9e-104 381.7 262 72.1
Nitab4.5_0000159g0070 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.3e-103 380.6 267 72.3
Migut.C01228 Erythranthe guttata HOM05D004272 ORTHO05D005020 1.7e-103 380.2 283 66.1
CAN.G61.12 Capsicum annuum HOM05D004272 ORTHO05D005020 1.1e-102 377.5 260 73.8
HanXRQChr13g0388201 Helianthus annuus HOM05D004272 ORTHO05D005020 1.1e-102 377.5 301 64.8
AUR62023587 Chenopodium quinoa HOM05D004272 ORTHO05D005020 2.7e-101 372.9 260 69.6
AUR62004668 Chenopodium quinoa HOM05D004272 ORTHO05D005020 1.4e-100 370.5 239 74.5
Lsat_1_v5_gn_5_157280 Lactuca sativa HOM05D004272 ORTHO05D005020 1.8e-100 370.2 301 63.5
Nitab4.5_0003518g0050 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.8e-100 370.2 265 70.9
CARHR289070 Cardamine hirsuta HOM05D004272 ORTHO05D005020 6.8e-100 368.2 247 70.4
PSO170G2167 Papaver somniferum HOM05D004272 ORTHO05D005020 1.5e-99 367.1 292 64.7
PSO782G4024 Papaver somniferum HOM05D004272 ORTHO05D005020 5.7e-99 365.2 314 61.1
unitig_61.g26072 Utricularia gibba HOM05D004272 ORTHO05D005020 3.7e-98 362.5 299 60.2
HPP92_003132 Vanilla planifolia HOM05D004272 ORTHO05D005020 3.7e-98 362.5 286 61.9
Nn5g27830 Nelumbo nucifera HOM05D004272 ORTHO05D005020 7.7e-96 354.8 332 60.5
TWI60G0092 Tripterygium wilfordii HOM05D004272 ORTHO05D005020 3.6e-93 345.9 285 61.4
arahy.Tifrunner.gnm1.ann1.E3548W Arachis hypogaea HOM05D004272 ORTHO05D005020 6.1e-93 345.1 226 72.6
HanXRQChr13g0388211 Helianthus annuus HOM05D004272 ORTHO05D005020 3.0e-92 342.8 307 59.0
Psat6g189360 Pisum sativum HOM05D004272 ORTHO05D005020 6.8e-92 341.7 238 68.9
vmacro00781 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 2.6e-91 339.7 400 50.2
Hund16809 Selenicereus undatus HOM05D004272 ORTHO05D005020 9.8e-91 337.8 299 58.5
MELO3C023674.2 Cucumis melo HOM05D004272 ORTHO05D005020 2.8e-90 336.3 237 67.5
Manes.02G190000 Manihot esculenta HOM05D004272 ORTHO05D005020 1.1e-89 334.3 193 78.2
DCAR_014268 Daucus carota HOM05D004272 ORTHO05D005020 4.1e-89 332.4 307 55.7
RcHm_v2.0_Chr7g0181531 Rosa chinensis HOM05D004272 ORTHO05D005020 7.0e-89 331.6 293 60.8
FAN18G3209 Fragaria x ananassa HOM05D004272 ORTHO05D005020 7.8e-88 328.2 293 61.4
FvH4_5g14850 Fragaria vesca HOM05D004272 ORTHO05D005020 1.7e-87 327.0 293 61.1
RcHm_v2.0_Chr3g0456471 Rosa chinensis HOM05D004272 ORTHO05D005020 5.0e-87 325.5 308 58.1
FAN08G2250 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.5e-86 323.9 293 60.1
SGA_v2.0_scaffold149G36610 Striga asiatica HOM05D004272 ORTHO05D005020 2.5e-86 323.2 379 49.1
FAN13G2363 Fragaria x ananassa HOM05D004272 ORTHO05D005020 8.0e-85 318.2 295 59.7
Ah.05g177840 Amaranthus hybridus HOM05D004272 ORTHO05D005020 8.9e-84 314.7 284 57.4
Hund16808 Selenicereus undatus HOM05D004272 ORTHO05D005020 9.8e-83 311.2 298 55.7
ECA248G3752 Erigeron canadensis HOM05D004272 ORTHO05D005020 5.4e-81 305.4 300 57.0
MD09G1287400 Malus domestica HOM05D004272 ORTHO05D005020 4.6e-80 302.4 311 56.3
Prupe.1G402600 Prunus persica HOM05D004272 ORTHO05D005020 1.2e-77 294.3 298 56.4
Nitab4.5_0029014g0010 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.9e-73 280.4 263 58.2
ECA248G0749 Erigeron canadensis HOM05D004272 ORTHO05D005020 2.7e-72 276.6 245 58.0
SHI09047 Sapria himalayana HOM05D004272 ORTHO05D005020 4.1e-65 252.7 301 47.2
Pp3c13_6130 Physcomitrium patens HOM05D004272 ORTHO05D005020 1.3e-63 247.7 287 46.0
Potri.019G086001 Populus trichocarpa HOM05D004272 ORTHO05D005020 4.4e-59 232.6 138 76.1
Os12g0174800 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 7.6e-59 231.9 283 45.2
Pp3c3_2290 Physcomitrium patens HOM05D004272 ORTHO05D005020 7.6e-59 231.9 287 44.3
SMO347G0125 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 5.4e-57 225.7 287 42.9
Mapoly0167s0026 Marchantia polymorpha HOM05D004272 ORTHO05D005020 9.6e-54 214.9 286 43.4
Dinv41680 Davidia involucrata HOM05D004272 ORTHO05D005020 8.1e-53 211.8 112 87.5
PGSC0003DMG400024543 Solanum tuberosum HOM05D004272 ORTHO05D005020 6.9e-52 208.8 153 68.6
CDE12G0366 Ceratophyllum demersum HOM05D004272 ORTHO05D005020 1.9e-49 200.7 245 44.9
SGA_v2.0_scaffold483G52343 Striga asiatica HOM05D004272 ORTHO05D005020 1.9e-49 200.7 139 70.5
Os11g0180200 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 5.4e-49 199.1 221 51.1
Zm00001eb091350 Zea mays HOM05D004272 ORTHO05D005020 1.3e-42 177.9 283 41.3
SEGI_33079 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 4.9e-42 176.0 137 61.3
AagrBONN_evm.TU.Sc2ySwM_228.1486 Anthoceros agrestis HOM05D004272 ORTHO05D005020 5.4e-41 172.6 239 40.6
CBR_g17924 Chara braunii HOM05D004272 ORTHO05D005020 9.3e-41 171.8 190 43.2
Zm00001eb138930 Zea mays HOM05D004272 ORTHO05D005020 1.0e-39 168.3 235 42.6
Cre12.g524450 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 2.4e-36 157.1 297 34.3
TPR.G15698 Trifolium pratense HOM05D004272 ORTHO05D005020 5.8e-35 152.5 102 65.7
CBR_g49956 Chara braunii HOM05D004272 ORTHO05D005020 1.9e-30 137.5 220 39.5
Haze_26549 Corylus avellana HOM05D004272 ORTHO05D005020 5.3e-28 129.4 245 34.7
Haze_26606 Corylus avellana HOM05D004272 ORTHO05D005020 9.0e-28 128.6 264 34.5
SEGI_21150 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 1.9e-25 120.9 84 70.2
PSO170G3665 Papaver somniferum HOM05D004272 ORTHO05D005020 6.7e-23 112.5 211 37.0
SMO119G0089 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.4e-20 104.8 218 31.7
SMO166G0076 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 2.4e-20 104.0 237 28.7
PRCOL_00003935 Prasinoderma coloniale HOM05D004272 ORTHO05D005020 3.1e-20 103.6 287 31.4
Cre09.g389949 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 9.0e-20 102.1 378 27.5
Cfa026335 Carpinus fangiana HOM05D003314 ORTHO05D004164 1.7e-18 97.8 249 29.7
CBR_g53619 Chara braunii HOM05D004272 ORTHO05D005020 1.0e-15 88.6 100 42.0
CBR_g53623 Chara braunii HOM05D004272 ORTHO05D005020 2.3e-15 87.4 109 36.7
SMO351G0156 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 5.1e-15 86.3 152 36.8
SMO115G0188 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 2.5e-14 84.0 240 27.5
SGA_v2.0_scaffold1053G53812 Striga asiatica HOM05D004272 ORTHO05D005020 9.7e-14 82.0 60 68.3
SGA_v2.0_scaffold322G48619 Striga asiatica HOM05D004272 ORTHO05D005020 9.7e-14 82.0 60 68.3
Cfa022797 Carpinus fangiana HOM05D004272 ORTHO05D005020 2.2e-13 80.9 307 24.4
SGA_v2.0_scaffold386G50488 Striga asiatica HOM05D004272 ORTHO05D005020 2.2e-13 80.9 60 66.7
Psat6g014560 Pisum sativum HOM05D004272 ORTHO05D005020 1.3e-10 71.6 50 68.0
Glyma.20G173900 Glycine max HOM05D004272 ORTHO05D005020 1.7e-10 71.2 47 68.1
Glyma.20G173800 Glycine max HOM05D004272 ORTHO05D005020 5.0e-10 69.7 95 47.4
CARHR290880 Cardamine hirsuta HOM05D004272 ORTHO05D005020 9.4e-09 65.5 67 49.3


User provided reference genes

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