Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G0867 Trochodendron aralioides HOM05D005317 ORTHO05D005146 6.5e-81 303.9 144 100.0
TAR376G0587 Trochodendron aralioides HOM05D005317 ORTHO05D005146 3.1e-38 162.2 140 62.1
TAR628G1097 Trochodendron aralioides HOM05D005317 ORTHO05D005146 3.7e-36 155.2 135 60.0
COL.COLO4_28461 Corchorus olitorius HOM05D005317 ORTHO05D005146 2.4e-35 152.5 143 53.8
Thecc.01G076000 Theobroma cacao HOM05D005317 ORTHO05D005146 4.6e-34 148.3 142 56.3
Oeu047228.1 Olea europaea HOM05D005317 ORTHO05D005146 7.8e-34 147.5 141 52.5
Aqoxy6G02455 Aquilegia oxysepala HOM05D005317 ORTHO05D005146 1.5e-32 143.3 141 56.0
Thecc.08G084700 Theobroma cacao HOM05D005317 ORTHO05D005146 3.3e-32 142.1 139 51.1
Oeu053645.1 Olea europaea HOM05D005317 ORTHO05D005146 2.1e-31 139.4 144 49.3
GSVIVG01009301001 Vitis vinifera HOM05D005317 ORTHO05D005146 2.8e-31 139.0 141 51.8
Manes.05G183500 Manihot esculenta HOM05D005317 ORTHO05D005146 3.6e-31 138.7 144 53.5
Potri.007G007000 Populus trichocarpa HOM05D005317 ORTHO05D005146 3.1e-30 135.6 148 52.0
Actinidia29632 Actinidia chinensis HOM05D005317 ORTHO05D005146 4.0e-30 135.2 113 60.2
QL06p038960 Quercus lobata HOM05D005317 ORTHO05D005146 8.9e-30 134.0 150 54.0
Rhsim07G0217500 Rhododendron simsii HOM05D005317 ORTHO05D005146 8.9e-30 134.0 139 51.8
Gohir.A06G025600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.5e-29 133.3 149 52.3
SalBow4G3082 Salvia bowleyana HOM05D005317 ORTHO05D005146 2.6e-29 132.5 141 52.5
Gohir.D06G022700 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.3e-28 130.2 149 51.7
Sabra14G0007800 Salix brachista HOM05D005317 ORTHO05D005146 2.2e-28 129.4 142 48.6
Gorai.010G027300 Gossypium raimondii HOM05D005317 ORTHO05D005146 3.8e-28 128.6 149 51.0
Potri.014G013000 Populus trichocarpa HOM05D005317 ORTHO05D005146 3.8e-28 128.6 143 49.0
Haze_22391 Corylus avellana HOM05D005317 ORTHO05D005146 1.1e-27 127.1 166 43.4
VMungo0251G0145 Vigna mungo HOM05D005317 ORTHO05D005146 1.4e-27 126.7 142 49.3
Phvul.003G233000 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 4.1e-27 125.2 144 50.0
Nn5g30662 Nelumbo nucifera HOM05D005317 ORTHO05D005146 5.4e-27 124.8 142 52.8
Oeu014288.1 Olea europaea HOM05D005317 ORTHO05D005146 1.6e-26 123.2 143 46.9
CiPaw.08G052300 Carya illinoinensis HOM05D005317 ORTHO05D005146 2.7e-26 122.5 138 55.1
Actinidia10221 Actinidia chinensis HOM05D005317 ORTHO05D005146 3.5e-26 122.1 93 65.6
Sabra07G0005300 Salix brachista HOM05D005317 ORTHO05D005146 6.0e-26 121.3 148 50.7
Glyma.05G108400 Glycine max HOM05D005317 ORTHO05D005146 1.0e-25 120.6 146 50.0
Haze_15027 Corylus avellana HOM05D005317 ORTHO05D005146 2.3e-25 119.4 143 51.0
Duzib187G1956 Durio zibethinus HOM05D005317 ORTHO05D005146 2.3e-25 119.4 150 48.7
Medtr4g097480 Medicago truncatula HOM05D005317 ORTHO05D005146 2.3e-25 119.4 143 43.4
VMungo0647G1960 Vigna mungo HOM05D005317 ORTHO05D005146 6.6e-25 117.9 141 49.6
Thecc.08G084600 Theobroma cacao HOM05D005317 ORTHO05D005146 8.7e-25 117.5 138 48.6
Prupe.1G419300 Prunus persica HOM05D005317 ORTHO05D005146 1.1e-24 117.1 146 48.6
Gohir.A01G123600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.5e-24 116.7 141 46.8
Cfa013739 Carpinus fangiana HOM05D005317 ORTHO05D005146 1.9e-24 116.3 137 48.9
Manes.13G109200 Manihot esculenta HOM05D005317 ORTHO05D005146 1.9e-24 116.3 154 48.1
Lj4g0026806 Lotus japonicus HOM05D005317 ORTHO05D005146 2.5e-24 115.9 148 45.9
Dinv23042 Davidia involucrata HOM05D005317 ORTHO05D005146 3.3e-24 115.5 130 50.0
Ciclev10026641m.g Citrus clementina HOM05D005317 ORTHO05D005146 4.3e-24 115.2 154 47.4
COL.COLO4_28460 Corchorus olitorius HOM05D005317 ORTHO05D005146 7.3e-24 114.4 143 46.2
Phvul.001G030800 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 7.3e-24 114.4 142 49.3
Psat6g017280 Pisum sativum HOM05D005317 ORTHO05D005146 7.3e-24 114.4 141 47.5
Migut.C00473 Erythranthe guttata HOM05D005317 ORTHO05D005146 9.6e-24 114.0 141 44.0
TPR.G13020 Trifolium pratense HOM05D005317 ORTHO05D005146 9.6e-24 114.0 146 43.8
Medtr1g017500 Medicago truncatula HOM05D005317 ORTHO05D005146 1.2e-23 113.6 145 46.2
CSS0048752 Camellia sinensis var. sinensis HOM05D005317 ORTHO05D005146 1.6e-23 113.2 147 48.3
Hma1.2p1_1139F.1_g260880 Hydrangea macrophylla HOM05D005317 ORTHO05D005146 1.6e-23 113.2 142 44.4
Aqoxy6G02509 Aquilegia oxysepala HOM05D005317 ORTHO05D005146 2.1e-23 112.8 112 58.0
Gohir.D12G076800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.1e-23 112.8 146 48.6
Gorai.002G136200 Gossypium raimondii HOM05D005317 ORTHO05D005146 2.1e-23 112.8 140 46.4
Gorai.008G085600 Gossypium raimondii HOM05D005317 ORTHO05D005146 2.1e-23 112.8 146 48.6
MBI16_g41241_MAGBIO Magnolia biondii HOM05D005317 ORTHO05D005146 2.8e-23 112.5 140 49.3
Eucgr.F00095 Eucalyptus grandis HOM05D005317 ORTHO05D005146 4.7e-23 111.7 153 46.4
Glyma.17G158600 Glycine max HOM05D005317 ORTHO05D005146 4.7e-23 111.7 145 47.6
Cfa004386 Carpinus fangiana HOM05D005317 ORTHO05D005146 6.2e-23 111.3 138 48.6
Prupe.6G217200 Prunus persica HOM05D005317 ORTHO05D005146 8.1e-23 110.9 154 47.4
Actinidia16411 Actinidia chinensis HOM05D005317 ORTHO05D005146 1.4e-22 110.2 136 50.0
TPR.G3735 Trifolium pratense HOM05D005317 ORTHO05D005146 1.4e-22 110.2 148 41.9
Atru.chr3.1057 Acer truncatum HOM05D005317 ORTHO05D005146 1.8e-22 109.8 158 44.3
DCAR_020064 Daucus carota HOM05D005317 ORTHO05D005146 1.8e-22 109.8 141 46.8
Dinv26957 Davidia involucrata HOM05D005317 ORTHO05D005146 2.4e-22 109.4 117 51.3
Glyma.06G048700 Glycine max HOM05D005317 ORTHO05D005146 2.4e-22 109.4 144 47.9
Psat0ss26165g0240 Pisum sativum HOM05D005317 ORTHO05D005146 3.1e-22 109.0 147 43.5
Cc10_g07630 Coffea canephora HOM05D005317 ORTHO05D005146 4.0e-22 108.6 155 45.8
Sopen04g031150 Solanum pennellii HOM05D005317 ORTHO05D005146 5.2e-22 108.2 140 47.9
Lj5g0002019 Lotus japonicus HOM05D005317 ORTHO05D005146 9.0e-22 107.5 139 46.8
COL.COLO4_11612 Corchorus olitorius HOM05D005317 ORTHO05D005146 1.5e-21 106.7 154 48.1
FAN26G0581 Fragaria x ananassa HOM05D005317 ORTHO05D005146 1.5e-21 106.7 168 40.5
Gohir.D01G111432 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.0e-21 106.3 141 45.4
FvH4_1g18210 Fragaria vesca HOM05D005317 ORTHO05D005146 4.4e-21 105.1 169 41.4
FAN23G2069 Fragaria x ananassa HOM05D005317 ORTHO05D005146 4.4e-21 105.1 168 40.5
FAN28G2997 Fragaria x ananassa HOM05D005317 ORTHO05D005146 7.6e-21 104.4 168 40.5
RcHm_v2.0_Chr2g0108721 Rosa chinensis HOM05D005317 ORTHO05D005146 7.6e-21 104.4 167 40.7
FAN19G1325 Fragaria x ananassa HOM05D005317 ORTHO05D005146 9.9e-21 104.0 169 40.8
Gohir.A12G080100 Gossypium hirsutum HOM05D005317 ORTHO05D005146 9.9e-21 104.0 156 46.2
Gohir.D05G215300 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.3e-20 103.6 136 44.1
Lalb_Chr24g0399511 Lupinus albus HOM05D005317 ORTHO05D005146 6.4e-20 101.3 135 46.7
MSTRG.23654 Avicennia marina HOM05D005317 ORTHO05D005146 8.4e-20 100.9 145 42.1
SGA_v2.0_scaffold15G07499 Striga asiatica HOM05D005317 ORTHO05D005146 1.1e-19 100.5 139 41.0
CiPaw.01G002200 Carya illinoinensis HOM05D005317 ORTHO05D005146 1.4e-19 100.1 156 47.4
Ciclev10029376m.g Citrus clementina HOM05D005317 ORTHO05D005146 1.4e-19 100.1 171 38.0
Gohir.A02G149800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 4.2e-19 98.6 149 47.0
Lalb_Chr09g0335521 Lupinus albus HOM05D005317 ORTHO05D005146 5.4e-19 98.2 146 41.1
Manes.05G183600 Manihot esculenta HOM05D005317 ORTHO05D005146 5.4e-19 98.2 144 43.1
Cpa.g.c31093.6 Carica papaya HOM05D005317 ORTHO05D005146 7.1e-19 97.8 150 40.0
Lj4C75G10 Lonicera japonica HOM05D002048 ORTHO05D002146 7.1e-19 97.8 93 53.8
Gohir.D06G022800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 9.3e-19 97.4 139 41.7
MSTRG.25022 Avicennia marina HOM05D005317 ORTHO05D005146 3.5e-18 95.5 142 41.5
Gorai.010G027400 Gossypium raimondii HOM05D005317 ORTHO05D005146 4.6e-18 95.1 139 41.7
Oeu021452.1 Olea europaea HOM05D005317 ORTHO05D005146 6.0e-18 94.7 147 46.3
Gohir.D03G030600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 7.8e-18 94.4 146 45.2
Gorai.009G222000 Gossypium raimondii HOM05D005317 ORTHO05D005146 1.3e-17 93.6 136 40.4
Gohir.A06G025700 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.3e-17 92.8 137 42.3
Eucgr.H02331 Eucalyptus grandis HOM05D005317 ORTHO05D005146 3.0e-17 92.4 154 40.3
Gohir.A05G212000 Gossypium hirsutum HOM05D005317 ORTHO05D005146 3.0e-17 92.4 137 43.1
Gorai.003G032200 Gossypium raimondii HOM05D005317 ORTHO05D005146 5.1e-17 91.7 146 44.5
Glyma.14G089084 Glycine max HOM05D005317 ORTHO05D005146 8.7e-17 90.9 142 40.8
Gorai.002G136100 Gossypium raimondii HOM05D005317 ORTHO05D005146 8.7e-17 90.9 133 42.9
VMungo1309G2313 Vigna mungo HOM05D005317 ORTHO05D005146 1.1e-16 90.5 140 42.9
ATR0739G163 Amborella trichopoda HOM05D005317 ORTHO05D005146 1.5e-16 90.1 168 38.7
MBI16_g06081_MAGBIO Magnolia biondii HOM05D005317 ORTHO05D005146 1.5e-16 90.1 94 53.2
CiPaw.07G172100 Carya illinoinensis HOM05D005317 ORTHO05D005146 1.9e-16 89.7 134 43.3
Prupe.1G419200 Prunus persica HOM05D005317 ORTHO05D005146 1.9e-16 89.7 152 35.5
Ciclev10027255m.g Citrus clementina HOM05D005317 ORTHO05D005146 4.3e-16 88.6 138 44.2
Gohir.A01G123550 Gossypium hirsutum HOM05D005317 ORTHO05D005146 4.3e-16 88.6 133 42.9
SalBow3G0220 Salvia bowleyana HOM05D005317 ORTHO05D005146 5.6e-16 88.2 139 41.7
Atru.chr13.870 Acer truncatum HOM05D005317 ORTHO05D005146 7.3e-16 87.8 144 43.8
Gohir.A11G212400 Gossypium hirsutum HOM05D005317 ORTHO05D005146 8.1e-15 84.3 151 43.0
Cfa013738 Carpinus fangiana HOM05D005317 ORTHO05D005146 1.1e-14 84.0 137 40.9
DCAR_009867 Daucus carota HOM05D005317 ORTHO05D005146 1.4e-14 83.6 153 37.3
Glyma.17G232900 Glycine max HOM05D005317 ORTHO05D005146 1.4e-14 83.6 146 41.1
Sc24g0002340 Simmondsia chinensis HOM05D005317 ORTHO05D005146 4.0e-14 82.0 135 38.5
PGSC0003DMG400004968 Solanum tuberosum HOM05D005317 ORTHO05D005146 4.0e-14 82.0 143 40.6
Phvul.009G074100 Phaseolus vulgaris HOM05D014755 ORTHO05D012905 1.2e-13 80.5 137 38.7
CDE07G0499 Ceratophyllum demersum HOM05D000271 ORTHO05D009467 1.5e-13 80.1 138 37.0
Potri.014G012900 Populus trichocarpa HOM05D005317 ORTHO05D005146 9.9e-13 77.4 155 41.9
CiPaw.07G172000 Carya illinoinensis HOM05D005317 ORTHO05D005146 1.3e-12 77.0 136 41.2
Gohir.D05G215433 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.3e-12 77.0 129 41.1
FAN27G2237 Fragaria x ananassa HOM05D030376 ORTHO05D005146 2.2e-12 76.3 166 36.7
EL10Ac6g13373 Beta vulgaris HOM05D005317 ORTHO05D005146 3.8e-12 75.5 93 47.3
ClCG01G017790 Citrullus lanatus HOM05D005317 ORTHO05D005146 8.4e-12 74.3 141 38.3
Actinidia11964 Actinidia chinensis HOM05D031334 ORTHO05D026410 1.1e-11 73.9 101 43.6
FAN20G0770 Fragaria x ananassa HOM05D030376 ORTHO05D005146 1.1e-11 73.9 168 35.7
Gorai.007G226200 Gossypium raimondii HOM05D005317 ORTHO05D005146 1.1e-11 73.9 145 42.8
SGA_v2.0_scaffold238G43910 Striga asiatica HOM05D005317 ORTHO05D005146 3.2e-11 72.4 144 36.8
Gohir.A05G212200 Gossypium hirsutum HOM05D005317 ORTHO05D005146 4.2e-11 72.0 141 38.3
Gohir.D01G111366 Gossypium hirsutum HOM05D005317 ORTHO05D005146 5.4e-11 71.6 75 50.7
arahy.Tifrunner.gnm1.ann1.K9IMQL Arachis hypogaea HOM05D005317 ORTHO05D005146 7.1e-11 71.2 178 35.4
FAN15G0380 Fragaria x ananassa HOM05D030376 ORTHO05D005146 7.1e-11 71.2 169 34.9
Atru.chr13.869 Acer truncatum HOM05D011270 ORTHO05D012905 9.3e-11 70.9 153 38.6
Sed0021979 Sechium edule HOM05D005317 ORTHO05D005146 9.3e-11 70.9 142 35.9
arahy.Tifrunner.gnm1.ann1.G8H34X Arachis hypogaea HOM05D005317 ORTHO05D005146 1.2e-10 70.5 106 46.2
ECA246G5098 Erigeron canadensis HOM05D005317 ORTHO05D005146 4.6e-10 68.6 133 36.1
Haze_22390 Corylus avellana HOM05D000071 ORTHO05D000029 6.0e-10 68.2 141 36.2
Glyma.14G089087 Glycine max HOM05D014755 ORTHO05D005146 7.9e-10 67.8 131 39.7
CDE04G2604 Ceratophyllum demersum HOM05D000375 ORTHO05D000240 1.3e-09 67.0 138 35.5
Phvul.001G030900 Phaseolus vulgaris HOM05D014755 ORTHO05D012905 3.9e-09 65.5 121 37.2
Ah.02g129000 Amaranthus hybridus HOM05D005317 ORTHO05D005146 6.7e-09 64.7 88 44.3
Lsat_1_v5_gn_3_86260 Lactuca sativa HOM05D005317 ORTHO05D005146 1.5e-08 63.5 132 35.6
Sc03g0002520 Simmondsia chinensis HOM05D005317 ORTHO05D005146 2.5e-08 62.8 102 41.2
Migut.H00325 Erythranthe guttata HOM05D005317 ORTHO05D005146 3.3e-08 62.4 152 32.9
Glyma.06G048800 Glycine max HOM05D014755 ORTHO05D005146 3.3e-08 62.4 135 38.5
HPP92_026659 Vanilla planifolia HOM05D066124 ORTHO05D051582 3.3e-08 62.4 138 34.8
TPR.G13134 Trifolium pratense HOM05D014755 ORTHO05D005146 5.6e-08 61.6 128 35.2
CARHR010290 Cardamine hirsuta HOM05D011270 ORTHO05D012905 7.4e-08 61.2 154 31.2
VMungo0647G0350 Vigna mungo HOM05D014755 ORTHO05D005146 7.4e-08 61.2 124 37.9
BcaC05g24800 Brassica carinata HOM05D011270 ORTHO05D012905 1.3e-07 60.5 93 38.7
FAN24G2816 Fragaria x ananassa HOM05D030376 ORTHO05D005146 1.3e-07 60.5 143 36.4
Glyma.17G232800 Glycine max HOM05D014755 ORTHO05D005146 1.3e-07 60.5 140 35.7
AUR62037856 Chenopodium quinoa HOM05D051035 ORTHO05D005146 2.1e-07 59.7 142 38.0
AUR62041096 Chenopodium quinoa HOM05D051035 ORTHO05D005146 2.1e-07 59.7 142 38.0
Lsat_1_v5_gn_4_159841 Lactuca sativa HOM05D005317 ORTHO05D005146 2.1e-07 59.7 145 34.5
Lj5g0011909 Lotus japonicus HOM05D014755 ORTHO05D005146 2.1e-07 59.7 123 35.8
ClCG05G026550 Citrullus lanatus HOM05D029900 ORTHO05D005146 2.8e-07 59.3 139 32.4
PGSC0003DMG400021404 Solanum tuberosum HOM05D061607 ORTHO05D005146 4.8e-07 58.5 150 33.3
Phvul.009G074000 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 6.2e-07 58.2 134 31.3
C05p08330 Brassica napus HOM05D011270 ORTHO05D012905 8.1e-07 57.8 94 36.2
BolC5t29583H Brassica oleracea HOM05D011270 ORTHO05D012905 8.1e-07 57.8 94 36.2
A06p06850 Brassica napus HOM05D011270 ORTHO05D012905 1.1e-06 57.4 94 37.2
BraA06t23899Z Brassica rapa HOM05D011270 ORTHO05D012905 1.1e-06 57.4 94 37.2
RcHm_v2.0_Chr6g0310031 Rosa chinensis HOM05D025097 ORTHO05D025563 2.4e-06 56.2 182 30.2
Zm00001eb052050 Zea mays HOM05D029595 ORTHO05D442535 2.4e-06 56.2 157 31.2
Rhsim08G0090500 Rhododendron simsii HOM05D005317 ORTHO05D005146 4.0e-06 55.5 155 32.3


User provided reference genes

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