Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G0861 Trochodendron aralioides HOM05D006739 ORTHO05D008402 2.1e-110 404.1 287 100.0
TAR628G0153 Trochodendron aralioides HOM05D006739 ORTHO05D008402 2.4e-42 177.9 178 55.6
TAR152G0001 Trochodendron aralioides HOM05D006739 ORTHO05D008402 4.2e-42 177.2 180 56.1
Dinv44882 Davidia involucrata HOM05D006739 ORTHO05D008402 1.3e-32 145.6 180 47.2
MBI16_g36544_MAGBIO Magnolia biondii HOM05D006739 ORTHO05D008402 4.8e-30 137.1 178 46.6
CSS0036090 Camellia sinensis var. sinensis HOM05D006739 ORTHO05D008402 4.5e-28 130.6 182 45.6
CSS0033703 Camellia sinensis var. sinensis HOM05D006739 ORTHO05D008402 9.9e-28 129.4 181 45.9
TWI56G0071 Tripterygium wilfordii HOM05D006739 ORTHO05D008402 1.2e-25 122.5 267 59.6
CiPaw.08G057600 Carya illinoinensis HOM05D006739 ORTHO05D008402 7.9e-25 119.8 185 43.8
Eucgr.F02164 Eucalyptus grandis HOM05D006739 ORTHO05D008402 2.3e-24 118.2 184 43.5
Hma1.2p1_0010F.1_g006410 Hydrangea macrophylla HOM05D006739 ORTHO05D008402 8.7e-24 116.3 183 45.9
MD08G1206600 Malus domestica HOM05D006739 ORTHO05D008402 8.7e-24 116.3 180 45.6
Atru.chr13.953 Acer truncatum HOM05D006739 ORTHO05D008402 4.3e-23 114.0 183 42.1
MD15G1390100 Malus domestica HOM05D006739 ORTHO05D008402 1.6e-22 112.1 180 43.3
Haze_22495 Corylus avellana HOM05D006739 ORTHO05D008402 2.8e-22 111.3 181 43.6
Prupe.1G539000 Prunus persica HOM05D006739 ORTHO05D008402 2.8e-22 111.3 180 41.7
Cfa013823 Carpinus fangiana HOM05D006739 ORTHO05D008402 6.2e-22 110.2 181 43.6
Ciclev10000605m.g Citrus clementina HOM05D006739 ORTHO05D008402 8.1e-22 109.8 187 38.5
Rhsim07G0214200 Rhododendron simsii HOM05D006739 ORTHO05D008402 1.8e-21 108.6 183 45.4
FvH4_5g34030 Fragaria vesca HOM05D006739 ORTHO05D008402 2.4e-21 108.2 178 42.1
FAN18G3137 Fragaria x ananassa HOM05D006739 ORTHO05D008402 2.4e-21 108.2 178 42.1
Manes.05G187600 Manihot esculenta HOM05D006739 ORTHO05D008402 6.9e-21 106.7 180 39.4
RcHm_v2.0_Chr7g0233521 Rosa chinensis HOM05D006739 ORTHO05D008402 1.2e-20 105.9 180 41.1
FAN08G0673 Fragaria x ananassa HOM05D006739 ORTHO05D008402 2.6e-20 104.8 178 41.6
QL12p039876 Quercus lobata HOM05D006739 ORTHO05D008402 5.8e-20 103.6 181 39.2
Migut.N00013 Erythranthe guttata HOM05D006739 ORTHO05D008402 1.3e-19 102.4 181 42.5
Potri.002G109500 Populus trichocarpa HOM05D006739 ORTHO05D008402 1.1e-18 99.4 181 38.1
Nitab4.5_0002667g0060 Nicotiana tabacum HOM05D006739 ORTHO05D008402 2.5e-18 98.2 180 37.8
EL10Ac1g00466 Beta vulgaris HOM05D006739 ORTHO05D008402 4.2e-18 97.4 179 39.7
Sabra02G0086200 Salix brachista HOM05D006739 ORTHO05D008402 7.1e-18 96.7 181 35.9
COL.COLO4_35303 Corchorus olitorius HOM05D006739 ORTHO05D008402 2.1e-17 95.1 172 37.8
THA.LOC104816789 Tarenaya hassleriana HOM05D006739 ORTHO05D008402 2.1e-17 95.1 178 37.1
Nitab4.5_0002667g0050 Nicotiana tabacum HOM05D006739 ORTHO05D008402 6.0e-17 93.6 178 37.6
AT1G09900 Arabidopsis thaliana HOM05D006739 ORTHO05D008402 1.1e-15 89.4 179 36.3
Glyma.06G092600 Glycine max HOM05D006739 ORTHO05D008402 1.9e-15 88.6 184 38.6
MSTRG.24837 Avicennia marina HOM05D006739 ORTHO05D008402 3.3e-15 87.8 92 54.3
ClCG08G011830 Citrullus lanatus HOM05D006739 ORTHO05D008402 4.3e-15 87.4 168 37.5
Glyma.04G090900 Glycine max HOM05D006739 ORTHO05D008402 4.3e-15 87.4 107 48.6
Aqoxy5G01872 Aquilegia oxysepala HOM05D006739 ORTHO05D008402 5.7e-15 87.0 181 37.0
vmacro04630 Vaccinium macrocarpon HOM05D006739 ORTHO05D008402 5.7e-15 87.0 184 41.3
Carub.0001s0928 Capsella rubella HOM05D006739 ORTHO05D008402 1.3e-14 85.9 180 35.6
Lsat_1_v5_gn_1_781 Lactuca sativa HOM05D006739 ORTHO05D008402 1.3e-14 85.9 178 36.5
AL1G20500 Arabidopsis lyrata HOM05D006739 ORTHO05D008402 1.6e-14 85.5 99 47.5
Thecc.08G075400 Theobroma cacao HOM05D006739 ORTHO05D008402 3.7e-14 84.3 174 35.1
DCAR_019326 Daucus carota HOM05D006739 ORTHO05D008402 4.8e-14 84.0 181 33.7
VMungo1309G0048 Vigna mungo HOM05D006739 ORTHO05D008402 4.8e-14 84.0 184 37.0
Ah.05g171720 Amaranthus hybridus HOM05D006739 ORTHO05D008402 1.8e-13 82.0 175 35.4
CARHR009960 Cardamine hirsuta HOM05D006739 ORTHO05D008402 2.4e-13 81.6 178 35.4
Aa31LG1G4990 Aethionema arabicum HOM05D006739 ORTHO05D008402 3.1e-13 81.3 114 43.0
Sp1g08530 Schrenkiella parvula HOM05D006739 ORTHO05D008402 3.1e-13 81.3 179 34.1
CDE07G2071 Ceratophyllum demersum HOM05D006739 ORTHO05D008402 4.1e-13 80.9 180 33.3
ECA247G1663 Erigeron canadensis HOM05D006739 ORTHO05D008402 4.1e-13 80.9 178 35.4
Sopen06g003030 Solanum pennellii HOM05D006739 ORTHO05D008402 4.1e-13 80.9 185 32.4
PGSC0003DMG400014713 Solanum tuberosum HOM05D006739 ORTHO05D008402 4.1e-13 80.9 188 34.6
PGSC0003DMG400027357 Solanum tuberosum HOM05D006739 ORTHO05D008402 4.1e-13 80.9 188 34.6
Phvul.009G145100 Phaseolus vulgaris HOM05D006739 ORTHO05D008402 5.3e-13 80.5 109 45.9
Sc15g0003370 Simmondsia chinensis HOM05D006739 ORTHO05D008402 5.3e-13 80.5 190 36.3
Actinidia19611 Actinidia chinensis HOM05D006739 ORTHO05D008402 9.0e-13 79.7 168 38.1
CsaV3_2G030450 Cucumis sativus L. HOM05D006739 ORTHO05D008402 9.0e-13 79.7 181 38.1
Duzib093G0111 Durio zibethinus HOM05D006739 ORTHO05D008402 1.2e-12 79.3 180 34.4
Peaxi162Scf01212g00003 Petunia axillaris HOM05D006739 ORTHO05D008402 1.2e-12 79.3 177 32.2
PSO761G0270 Papaver somniferum HOM05D006739 ORTHO05D008402 1.5e-12 79.0 115 43.5
Sed0004950 Sechium edule HOM05D006739 ORTHO05D008402 2.0e-12 78.6 92 51.1
PSO700G0042 Papaver somniferum HOM05D006739 ORTHO05D008402 3.4e-12 77.8 118 42.4
A06p06610 Brassica napus HOM05D006739 ORTHO05D008402 4.5e-12 77.4 181 35.4
C05p08020 Brassica napus HOM05D006739 ORTHO05D008402 1.3e-11 75.9 178 35.4
BraA06t23875Z Brassica rapa HOM05D006739 ORTHO05D008402 1.7e-11 75.5 181 34.8
BcaC05g24834 Brassica carinata HOM05D006739 ORTHO05D008402 2.2e-11 75.1 83 47.0
ATR0800G015 Amborella trichopoda HOM05D006739 ORTHO05D008402 2.9e-11 74.7 112 42.9
BolC5t29554H Brassica oleracea HOM05D006739 ORTHO05D008402 8.4e-11 73.2 79 49.4
MELO3C011106.2 Cucumis melo HOM05D006739 ORTHO05D008402 8.4e-11 73.2 178 36.5
Oeu020282.1 Olea europaea HOM05D006739 ORTHO05D008402 1.1e-10 72.8 75 53.3
Hund26833 Selenicereus undatus HOM05D006739 ORTHO05D008402 4.2e-10 70.9 171 35.1
AUR62019126 Chenopodium quinoa HOM05D006739 ORTHO05D008402 5.5e-10 70.5 79 45.6
HanXRQChr11g0324241 Helianthus annuus HOM05D006739 ORTHO05D008402 7.2e-10 70.1 58 55.2
Hund26854 Selenicereus undatus HOM05D006739 ORTHO05D008402 9.3e-10 69.7 177 33.9
arahy.Tifrunner.gnm1.ann1.CH37P4 Arachis hypogaea HOM05D006739 ORTHO05D008402 1.6e-09 68.9 188 30.3
DCAR_012846 Daucus carota HOM05D006739 ORTHO05D008402 1.6e-09 68.9 182 35.7
VMungo0647G1229 Vigna mungo HOM05D006739 ORTHO05D008402 1.6e-09 68.9 108 40.7
CAN.G941.26 Capsicum annuum HOM05D006739 ORTHO05D008402 2.1e-09 68.6 42 73.8
Cpa.g.sc177.11 Carica papaya HOM05D006739 ORTHO05D008402 2.1e-09 68.6 160 36.2
Glyma.14G184200 Glycine max HOM05D006739 ORTHO05D008402 2.7e-09 68.2 107 38.3
SalBow5G4649 Salvia bowleyana HOM05D006739 ORTHO05D008402 4.6e-09 67.4 60 55.0
AUR62014385 Chenopodium quinoa HOM05D006739 ORTHO05D008402 6.1e-09 67.0 118 39.0
Actinidia10267 Actinidia chinensis HOM05D006739 ORTHO05D008402 1.0e-08 66.2 90 45.6
Phvul.008G184000 Phaseolus vulgaris HOM05D006739 ORTHO05D008402 1.3e-08 65.9 108 38.9
Phvul.008G183900 Phaseolus vulgaris HOM05D006739 ORTHO05D008402 2.3e-08 65.1 93 43.0
PGR042G0142 Punica granatum HOM05D006739 ORTHO05D008402 2.3e-08 65.1 70 50.0
arahy.Tifrunner.gnm1.ann1.M3C1JT Arachis hypogaea HOM05D006739 ORTHO05D008402 3.0e-08 64.7 188 29.8
Gohir.D06G029600 Gossypium hirsutum HOM05D006739 ORTHO05D008402 3.9e-08 64.3 99 42.4
Gohir.A06G030375 Gossypium hirsutum HOM05D006739 ORTHO05D008402 5.1e-08 63.9 117 38.5
Gorai.010G032500 Gossypium raimondii HOM05D006739 ORTHO05D008402 5.1e-08 63.9 117 38.5
CDE04G0064 Ceratophyllum demersum HOM05D006739 ORTHO05D008402 8.7e-08 63.2 89 40.4
Lj1g0027306 Lotus japonicus HOM05D006739 ORTHO05D008402 1.1e-07 62.8 107 39.3
Hund26853 Selenicereus undatus HOM05D006739 ORTHO05D008402 7.4e-07 60.1 171 32.7
CDE06G1140 Ceratophyllum demersum HOM05D002753 ORTHO05D003097 9.7e-07 59.7 89 39.3
CANSAT25G1844 Cannabis sativa HOM05D006739 ORTHO05D008402 1.3e-06 59.3 174 31.6
Glyma.02G216900 Glycine max HOM05D006739 ORTHO05D008402 2.2e-06 58.5 107 36.4
VMungo0647G0534 Vigna mungo HOM05D006739 ORTHO05D008402 8.2e-06 56.6 108 34.3


User provided reference genes

Program Settings