Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G0821 Trochodendron aralioides HOM05D004752 ORTHO05D005523 1.8e-66 255.8 129 100.0
TAR628G0740 Trochodendron aralioides HOM05D004752 ORTHO05D005523 5.3e-42 174.5 96 89.6
Atru.chr13.2410 Acer truncatum HOM05D004752 ORTHO05D005523 3.8e-40 168.3 96 85.4
Lalb_Chr03g0036521 Lupinus albus HOM05D004752 ORTHO05D005523 2.1e-38 162.5 96 83.3
Lalb_Chr19g0129031 Lupinus albus HOM05D004752 ORTHO05D005523 2.1e-38 162.5 96 82.3
Dinv41721 Davidia involucrata HOM05D004752 ORTHO05D005523 3.6e-38 161.8 100 82.0
Thecc.08G186100 Theobroma cacao HOM05D004752 ORTHO05D005523 3.0e-37 158.7 100 81.0
Ciclev10002954m.g Citrus clementina HOM05D004752 ORTHO05D005523 6.8e-37 157.5 96 81.2
COL.COLO4_34528 Corchorus olitorius HOM05D004752 ORTHO05D005523 6.8e-37 157.5 100 81.0
Nn5g27610 Nelumbo nucifera HOM05D004752 ORTHO05D005523 1.2e-36 156.8 99 82.8
FvH4_5g38800 Fragaria vesca HOM05D004752 ORTHO05D005523 1.5e-36 156.4 96 78.1
FAN18G0635 Fragaria x ananassa HOM05D004752 ORTHO05D005523 1.5e-36 156.4 96 78.1
FAN04G0063 Fragaria x ananassa HOM05D004752 ORTHO05D005523 2.6e-36 155.6 96 78.1
PGR042G3757 Punica granatum HOM05D004752 ORTHO05D005523 2.6e-36 155.6 100 80.0
CiPaw.05G229600 Carya illinoinensis HOM05D004752 ORTHO05D005523 3.4e-36 155.2 96 80.2
CiPaw.06G024200 Carya illinoinensis HOM05D004752 ORTHO05D005523 5.7e-36 154.5 96 79.2
FAN08G2110 Fragaria x ananassa HOM05D004752 ORTHO05D005523 5.7e-36 154.5 96 77.1
FAN13G0652 Fragaria x ananassa HOM05D004752 ORTHO05D005523 5.7e-36 154.5 96 77.1
RcHm_v2.0_Chr7g0240801 Rosa chinensis HOM05D004752 ORTHO05D005523 5.7e-36 154.5 96 78.1
CSS0011118 Camellia sinensis var. sinensis HOM05D004752 ORTHO05D005523 7.5e-36 154.1 100 80.0
CSS0018537 Camellia sinensis var. sinensis HOM05D004752 ORTHO05D005523 7.5e-36 154.1 100 80.0
Duzib211G0386 Durio zibethinus HOM05D004752 ORTHO05D005523 7.5e-36 154.1 100 80.0
BcaB03g14924 Brassica carinata HOM05D004752 ORTHO05D005523 1.7e-35 152.9 97 78.4
BcaC08g46647 Brassica carinata HOM05D004752 ORTHO05D005523 1.7e-35 152.9 97 78.4
BcaC08g46649 Brassica carinata HOM05D004752 ORTHO05D005523 1.7e-35 152.9 97 78.4
BcaC08g46651 Brassica carinata HOM05D004752 ORTHO05D005523 1.7e-35 152.9 97 78.4
BcaC08g46652 Brassica carinata HOM05D004752 ORTHO05D005523 1.7e-35 152.9 97 78.4
C06p35220 Brassica napus HOM05D004752 ORTHO05D005523 1.7e-35 152.9 97 78.4
Potri.019G081700 Populus trichocarpa HOM05D004752 ORTHO05D005523 1.7e-35 152.9 97 79.4
BolC6t38628H Brassica oleracea HOM05D004752 ORTHO05D005523 2.8e-35 152.1 97 78.4
Phvul.007G240400 Phaseolus vulgaris HOM05D004752 ORTHO05D005523 2.8e-35 152.1 96 77.1
C06p46120 Brassica napus HOM05D004752 ORTHO05D005523 3.7e-35 151.8 97 77.3
BolC6t39665H Brassica oleracea HOM05D004752 ORTHO05D005523 3.7e-35 151.8 97 77.3
Sp5g27090 Schrenkiella parvula HOM05D004752 ORTHO05D005523 3.7e-35 151.8 97 77.3
BraA07t31385Z Brassica rapa HOM05D004752 ORTHO05D005523 4.8e-35 151.4 97 77.3
Glyma.20G068500 Glycine max HOM05D004752 ORTHO05D005523 4.8e-35 151.4 97 78.4
Aa31LG4G8590 Aethionema arabicum HOM05D004752 ORTHO05D005523 6.3e-35 151.0 97 78.4
DCAR_011527 Daucus carota HOM05D004752 ORTHO05D005523 6.3e-35 151.0 97 76.3
Duzib177G0553 Durio zibethinus HOM05D004752 ORTHO05D005523 6.3e-35 151.0 100 78.0
Lalb_Chr01g0010501 Lupinus albus HOM05D004752 ORTHO05D005523 6.3e-35 151.0 96 78.1
A07p30460 Brassica napus HOM05D004752 ORTHO05D005523 8.3e-35 150.6 98 77.6
Cc00_g06570 Coffea canephora HOM05D004752 ORTHO05D005523 8.3e-35 150.6 100 77.0
Lj6g0009552 Lotus japonicus HOM05D004752 ORTHO05D005523 8.3e-35 150.6 97 77.3
TPR.G20783 Trifolium pratense HOM05D004752 ORTHO05D005523 8.3e-35 150.6 97 78.4
Glyma.10G117300 Glycine max HOM05D004752 ORTHO05D005523 1.1e-34 150.2 97 77.3
ClCG09G009960 Citrullus lanatus HOM05D004752 ORTHO05D005523 1.4e-34 149.8 98 77.6
PSO170G1458 Papaver somniferum HOM05D004752 ORTHO05D005523 1.4e-34 149.8 98 75.5
PSO782G1292 Papaver somniferum HOM05D004752 ORTHO05D005523 1.4e-34 149.8 98 75.5
Aqoxy5G02666 Aquilegia oxysepala HOM05D004752 ORTHO05D005523 1.8e-34 149.4 102 74.5
A07p38200 Brassica napus HOM05D004752 ORTHO05D005523 1.8e-34 149.4 97 77.3
Carub.0002s1880 Capsella rubella HOM05D004752 ORTHO05D005523 1.8e-34 149.4 97 77.3
BcaC08g45743 Brassica carinata HOM05D004752 ORTHO05D005523 2.4e-34 149.1 97 76.3
Ca_21523_v3 Cicer arietinum L. HOM05D004752 ORTHO05D005523 2.4e-34 149.1 96 75.0
MELO3C008132.2 Cucumis melo HOM05D004752 ORTHO05D005523 2.4e-34 149.1 98 76.5
Manes.02G194400 Manihot esculenta HOM05D004752 ORTHO05D005523 2.4e-34 149.1 96 74.0
BcaC03g15326 Brassica carinata HOM05D004752 ORTHO05D005523 3.1e-34 148.7 97 77.3
A02p17630 Brassica napus HOM05D004752 ORTHO05D005523 3.1e-34 148.7 97 77.3
C02p29310 Brassica napus HOM05D004752 ORTHO05D005523 3.1e-34 148.7 97 77.3
BolC2t08982H Brassica oleracea HOM05D004752 ORTHO05D005523 3.1e-34 148.7 97 77.3
BraA02t06809Z Brassica rapa HOM05D004752 ORTHO05D005523 3.1e-34 148.7 97 77.3
CARHR064830 Cardamine hirsuta HOM05D004752 ORTHO05D005523 3.1e-34 148.7 97 76.3
BcaB05g24700 Brassica carinata HOM05D004752 ORTHO05D005523 4.1e-34 148.3 97 77.3
BraA07t30682Z Brassica rapa HOM05D004752 ORTHO05D005523 4.1e-34 148.3 98 76.5
Medtr1g048960 Medicago truncatula HOM05D004752 ORTHO05D005523 4.1e-34 148.3 97 77.3
Prupe.1G506700 Prunus persica HOM05D004752 ORTHO05D005523 4.1e-34 148.3 96 75.0
THA.LOC104809736 Tarenaya hassleriana HOM05D004752 ORTHO05D005523 4.1e-34 148.3 97 77.3
BcaB03g15640 Brassica carinata HOM05D004752 ORTHO05D005523 5.4e-34 147.9 98 75.5
CsaV3_2G033590 Cucumis sativus L. HOM05D004752 ORTHO05D005523 7.0e-34 147.5 98 75.5
Thhalv10019369m.g Eutrema salsugineum HOM05D004752 ORTHO05D005523 7.0e-34 147.5 97 76.3
Lj5g0024701 Lotus japonicus HOM05D004752 ORTHO05D005523 9.1e-34 147.1 99 77.8
ECA247G0381 Erigeron canadensis HOM05D004752 ORTHO05D005523 1.2e-33 146.7 96 79.2
Potri.013G110600 Populus trichocarpa HOM05D004752 ORTHO05D005523 1.2e-33 146.7 99 75.8
THA.LOC104816385 Tarenaya hassleriana HOM05D004752 ORTHO05D005523 1.2e-33 146.7 98 78.6
vmacro00760 Vaccinium macrocarpon HOM05D004752 ORTHO05D005523 1.2e-33 146.7 100 76.0
Gorai.009G263400 Gossypium raimondii HOM05D004752 ORTHO05D005523 1.6e-33 146.4 98 78.6
PGSC0003DMG400026069 Solanum tuberosum HOM05D004752 ORTHO05D005523 2.0e-33 146.0 97 75.3
Gohir.D05G251900 Gossypium hirsutum HOM05D004752 ORTHO05D005523 2.7e-33 145.6 98 78.6
Gorai.009G263300 Gossypium raimondii HOM05D004752 ORTHO05D005523 2.7e-33 145.6 98 78.6
Actinidia29420 Actinidia chinensis HOM05D004752 ORTHO05D005523 3.5e-33 145.2 100 77.0
Manes.18G103200 Manihot esculenta HOM05D004752 ORTHO05D005523 3.5e-33 145.2 99 74.7
Sed0006132 Sechium edule HOM05D004752 ORTHO05D005523 3.5e-33 145.2 98 73.5
Migut.C01286 Erythranthe guttata HOM05D004752 ORTHO05D005523 4.5e-33 144.8 97 74.2
Gohir.A05G250100 Gossypium hirsutum HOM05D004752 ORTHO05D005523 4.5e-33 144.8 98 77.6
Aa31LG7G6540 Aethionema arabicum HOM05D003880 ORTHO05D004959 5.9e-33 144.4 97 71.1
Gohir.D05G253600 Gossypium hirsutum HOM05D004752 ORTHO05D005523 5.9e-33 144.4 97 78.4
HanXRQChr04g0109661 Helianthus annuus HOM05D004752 ORTHO05D005523 7.7e-33 144.1 98 76.5
AUR62022705 Chenopodium quinoa HOM05D004752 ORTHO05D005523 1.3e-32 143.3 95 75.8
Rhsim06G0089000 Rhododendron simsii HOM05D004752 ORTHO05D005523 1.7e-32 142.9 100 73.0
Rhsim11G0057800 Rhododendron simsii HOM05D004752 ORTHO05D005523 1.7e-32 142.9 100 73.0
Gohir.A05G250200 Gossypium hirsutum HOM05D004752 ORTHO05D005523 2.3e-32 142.5 98 76.5
QL12p035384 Quercus lobata HOM05D004752 ORTHO05D005523 2.3e-32 142.5 96 75.0
Gohir.D09G112701 Gossypium hirsutum HOM05D004752 ORTHO05D005523 2.9e-32 142.1 99 72.7
Gohir.D09G112900 Gossypium hirsutum HOM05D004752 ORTHO05D005523 6.5e-32 141.0 100 72.0
arahy.Tifrunner.gnm1.ann1.0CG85F Arachis hypogaea HOM05D004752 ORTHO05D005523 1.5e-31 139.8 98 72.4
arahy.Tifrunner.gnm1.ann1.S21HCY Arachis hypogaea HOM05D004752 ORTHO05D005523 1.5e-31 139.8 98 72.4
MD00G1104100 Malus domestica HOM05D004752 ORTHO05D005523 1.9e-31 139.4 94 72.3
PGR102G0675 Punica granatum HOM05D004752 ORTHO05D005523 1.9e-31 139.4 102 71.6
Nitab4.5_0000303g0280 Nicotiana tabacum HOM05D004752 ORTHO05D005523 3.2e-31 138.7 98 71.4
Nitab4.5_0001082g0040 Nicotiana tabacum HOM05D004752 ORTHO05D005523 3.2e-31 138.7 98 71.4
AL2G31650 Arabidopsis lyrata HOM05D004752 ORTHO05D005523 4.2e-31 138.3 98 73.5
Eucgr.F02586 Eucalyptus grandis HOM05D004752 ORTHO05D005523 4.2e-31 138.3 104 72.1
Peaxi162Scf00268g00615 Petunia axillaris HOM05D004752 ORTHO05D005523 5.5e-31 137.9 98 73.5
EL10Ac1g00098 Beta vulgaris HOM05D004752 ORTHO05D005523 7.2e-31 137.5 97 71.1
Gorai.006G130300 Gossypium raimondii HOM05D004752 ORTHO05D005523 7.2e-31 137.5 101 72.3
Lj4E474T0 Lonicera japonica HOM05D004752 ORTHO05D005523 2.1e-30 136.0 90 80.0
PGSC0003DMG400009277 Solanum tuberosum HOM05D004752 ORTHO05D005523 3.6e-30 135.2 85 76.5
AT1G72020 Arabidopsis thaliana HOM05D004752 ORTHO05D005523 4.7e-30 134.8 98 70.4
AUR62004632 Chenopodium quinoa HOM05D004752 ORTHO05D005523 4.7e-30 134.8 107 66.4
FAN02G3062 Fragaria x ananassa HOM05D004752 ORTHO05D005523 4.7e-30 134.8 81 77.8
Sopen06g023680 Solanum pennellii HOM05D004752 ORTHO05D005523 6.1e-30 134.4 96 69.8
MSTRG.1541 Avicennia marina HOM05D004752 ORTHO05D005523 8.0e-30 134.0 100 70.0
Solyc06g065180.3 Solanum lycopersicum HOM05D004752 ORTHO05D005523 8.0e-30 134.0 96 69.8
TWI14G1278 Tripterygium wilfordii HOM05D004752 ORTHO05D005523 8.0e-30 134.0 98 68.4
TWI59G0745 Tripterygium wilfordii HOM05D004752 ORTHO05D005523 8.0e-30 134.0 98 68.4
Peaxi162Scf00391g00436 Petunia axillaris HOM05D004752 ORTHO05D005523 1.0e-29 133.7 96 67.7
Sc23g0001310 Simmondsia chinensis HOM05D004752 ORTHO05D005523 1.0e-29 133.7 98 69.4
VMungo0720G2181 Vigna mungo HOM05D004752 ORTHO05D005523 1.0e-29 133.7 121 60.3
Actinidia03509 Actinidia chinensis HOM05D004752 ORTHO05D005523 1.8e-29 132.9 96 72.9
Lsat_1_v5_gn_1_12481 Lactuca sativa HOM05D004752 ORTHO05D005523 2.3e-29 132.5 98 71.4
Nitab4.5_0003010g0020 Nicotiana tabacum HOM05D004752 ORTHO05D005523 2.3e-29 132.5 96 68.8
Os04g0432600 Oryza sativa ssp. japonica HOM05D004752 ORTHO05D005523 2.3e-29 132.5 95 68.4
Hund27095 Selenicereus undatus HOM05D004752 ORTHO05D005523 2.3e-29 132.5 98 68.4
MSTRG.25459 Avicennia marina HOM05D004752 ORTHO05D005523 3.0e-29 132.1 99 69.7
Duzib177G0197 Durio zibethinus HOM05D004752 ORTHO05D005523 3.0e-29 132.1 100 71.0
FAN18G0607 Fragaria x ananassa HOM05D004752 ORTHO05D005523 4.0e-29 131.7 73 83.6
FAN18G1874 Fragaria x ananassa HOM05D004752 ORTHO05D005523 4.0e-29 131.7 73 83.6
FAN18G2073 Fragaria x ananassa HOM05D004752 ORTHO05D005523 4.0e-29 131.7 73 83.6
Nitab4.5_0000365g0250 Nicotiana tabacum HOM05D004752 ORTHO05D005523 4.0e-29 131.7 97 70.1
MD15G1358900 Malus domestica HOM05D004752 ORTHO05D005523 6.8e-29 131.0 96 67.7
SalBow6G5456 Salvia bowleyana HOM05D004752 ORTHO05D005523 8.8e-29 130.6 97 69.1
SalBow6G7070 Salvia bowleyana HOM05D004752 ORTHO05D005523 8.8e-29 130.6 97 69.1
Zm00001eb082670 Zea mays HOM05D004752 ORTHO05D005523 2.6e-28 129.0 95 66.3
MBI17_g21481_MAGBIO Magnolia biondii HOM05D004752 ORTHO05D005523 4.4e-28 128.3 69 89.9
SalBow6G5891 Salvia bowleyana HOM05D004752 ORTHO05D005523 4.4e-28 128.3 98 69.4
CDE07G1886 Ceratophyllum demersum HOM05D004752 ORTHO05D005523 7.5e-28 127.5 97 68.0
CDE04G0573 Ceratophyllum demersum HOM05D004752 ORTHO05D005523 9.8e-28 127.1 97 68.0
Zm00001eb243470 Zea mays HOM05D004752 ORTHO05D005523 1.3e-27 126.7 95 63.2
CANSAT80G1056 Cannabis sativa HOM05D004752 ORTHO05D005523 3.7e-27 125.2 102 68.6
Rhsim11G0056800 Rhododendron simsii HOM05D004752 ORTHO05D005523 6.3e-27 124.4 124 57.3
SalBow6G0286 Salvia bowleyana HOM05D004752 ORTHO05D005523 6.3e-27 124.4 74 79.7
GSVIVG01012767001 Vitis vinifera HOM05D004752 ORTHO05D005523 1.8e-26 122.9 107 61.7
Sc01g0001860 Simmondsia chinensis HOM05D004752 ORTHO05D005523 3.1e-26 122.1 97 66.0
SGA_v2.0_scaffold118G32535 Striga asiatica HOM05D003880 ORTHO05D004959 5.4e-26 121.3 77 77.9
unitig_0.g2130 Utricularia gibba HOM05D004752 ORTHO05D005523 9.2e-26 120.6 85 72.9
Sabra19G0093300 Salix brachista HOM05D004752 ORTHO05D005523 2.7e-25 119.0 156 46.8
ATR0071G025 Amborella trichopoda HOM05D004752 ORTHO05D005523 6.6e-24 114.4 74 78.4
HPP92_000079 Vanilla planifolia HOM05D004752 ORTHO05D005523 4.7e-22 108.2 59 83.1
SEGI_26065 Sequoiadendron giganteum HOM05D004752 ORTHO05D005523 1.8e-21 106.3 85 61.2
Gohir.A09G115700 Gossypium hirsutum HOM05D004752 ORTHO05D005523 3.0e-21 105.5 63 82.5
unitig_747.g21474 Utricularia gibba HOM05D004752 ORTHO05D005523 4.0e-21 105.1 62 83.9
SHI09031 Sapria himalayana HOM05D004752 ORTHO05D005523 2.7e-17 92.4 61 67.2
AagrBONN_evm.TU.Sc2ySwM_117.1418 Anthoceros agrestis HOM05D004752 ORTHO05D005523 6.4e-11 71.2 93 39.8
Pp3c19_1780 Physcomitrium patens HOM05D004752 ORTHO05D005523 1.4e-10 70.1 80 46.2
CBR_g3658 Chara braunii HOM05D004752 ORTHO05D005523 5.4e-10 68.2 67 53.7
Psat2g095760 Pisum sativum HOM05D000552 ORTHO05D005523 5.0e-08 61.6 65 47.7


User provided reference genes

Program Settings