Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G0791 Trochodendron aralioides HOM05D004504 ORTHO05D005324 1.9e-140 502.7 293 100.0
TAR625G1455 Trochodendron aralioides HOM05D004504 ORTHO05D005324 1.3e-88 330.5 307 70.0
Thecc.08G010300 Theobroma cacao HOM05D004504 ORTHO05D005324 1.6e-81 307.0 323 58.8
Cfa018531 Carpinus fangiana HOM05D004504 ORTHO05D005324 1.5e-79 300.4 323 59.1
Haze_17534 Corylus avellana HOM05D004504 ORTHO05D005324 1.5e-79 300.4 321 60.1
Haze_17537 Corylus avellana HOM05D004504 ORTHO05D005324 1.5e-79 300.4 321 60.1
QL02p005285 Quercus lobata HOM05D004504 ORTHO05D005324 4.3e-79 298.9 306 61.1
Duzib093G0589 Durio zibethinus HOM05D004504 ORTHO05D005324 6.2e-78 295.0 325 59.1
Duzib116G0149 Durio zibethinus HOM05D004504 ORTHO05D005324 6.2e-78 295.0 319 57.7
Prupe.1G437500 Prunus persica HOM05D004504 ORTHO05D005324 1.4e-74 283.9 343 57.4
CiPaw.15G061000 Carya illinoinensis HOM05D004504 ORTHO05D005324 3.2e-74 282.7 319 56.4
Potri.002G127100 Populus trichocarpa HOM05D004504 ORTHO05D005324 4.6e-73 278.9 323 59.4
Potri.014G031100 Populus trichocarpa HOM05D004504 ORTHO05D005324 2.3e-72 276.6 328 55.2
MELO3C016744.2 Cucumis melo HOM05D004504 ORTHO05D005324 3.0e-72 276.2 303 57.4
ClCG05G019780 Citrullus lanatus HOM05D004504 ORTHO05D005324 8.6e-72 274.6 301 58.8
Aqoxy5G01252 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 3.3e-71 272.7 309 63.1
COL.COLO4_26483 Corchorus olitorius HOM05D004504 ORTHO05D005324 3.3e-71 272.7 293 60.4
Manes.05G172300 Manihot esculenta HOM05D004504 ORTHO05D005324 4.3e-71 272.3 311 57.6
CsaV3_4G034230 Cucumis sativus L. HOM05D004504 ORTHO05D005324 5.6e-71 271.9 288 57.6
RcHm_v2.0_Chr6g0307761 Rosa chinensis HOM05D004504 ORTHO05D005324 6.2e-70 268.5 325 54.2
TWI36G0121 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 2.3e-69 266.5 264 60.2
Gohir.D05G204900 Gossypium hirsutum HOM05D004504 ORTHO05D005324 8.9e-69 264.6 319 53.9
Hma1.2p1_0982F.1_g243930 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 1.5e-68 263.8 295 62.7
Gohir.A05G201800 Gossypium hirsutum HOM05D004504 ORTHO05D005324 3.4e-68 262.7 319 53.6
Gorai.009G211200 Gossypium raimondii HOM05D004504 ORTHO05D005324 4.4e-68 262.3 319 53.9
Glyma.06G039100 Glycine max HOM05D004504 ORTHO05D005324 1.3e-67 260.8 271 60.1
Phvul.009G064300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 1.7e-67 260.4 280 58.6
Sed0018137 Sechium edule HOM05D004504 ORTHO05D005324 2.2e-67 260.0 299 54.8
CiPaw.16G045400 Carya illinoinensis HOM05D004504 ORTHO05D005324 2.9e-67 259.6 296 55.7
Glyma.04G038100 Glycine max HOM05D004504 ORTHO05D005324 1.1e-66 257.7 271 63.5
TWI36G0477 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 1.1e-66 257.7 313 54.6
FAN20G0303 Fragaria x ananassa HOM05D004504 ORTHO05D005324 1.9e-66 256.9 323 53.9
FvH4_2g34560 Fragaria vesca HOM05D004504 ORTHO05D005324 4.1e-66 255.8 325 53.5
FAN15G1553 Fragaria x ananassa HOM05D004504 ORTHO05D005324 4.1e-66 255.8 322 52.5
Sabra02G0099600 Salix brachista HOM05D004504 ORTHO05D005324 5.4e-66 255.4 305 55.7
ClCG08G015770 Citrullus lanatus HOM05D004504 ORTHO05D005324 9.2e-66 254.6 274 57.3
FAN27G0025 Fragaria x ananassa HOM05D004504 ORTHO05D005324 2.1e-65 253.4 318 51.9
Hma1.2p1_0718F.1_g208360 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 2.1e-65 253.4 300 57.0
Manes.18G035600 Manihot esculenta HOM05D004504 ORTHO05D005324 4.6e-65 252.3 286 61.9
CsaV3_2G027990 Cucumis sativus L. HOM05D004504 ORTHO05D005324 1.1e-63 247.7 275 56.4
Ciclev10001740m.g Citrus clementina HOM05D004504 ORTHO05D005324 1.5e-63 247.3 342 51.2
Sabra14G0022100 Salix brachista HOM05D004504 ORTHO05D005324 1.5e-63 247.3 332 50.9
VMungo1309G0174 Vigna mungo HOM05D004504 ORTHO05D005324 3.3e-63 246.1 301 54.8
MSTRG.22265 Avicennia marina HOM05D004504 ORTHO05D005324 7.3e-63 245.0 310 51.9
MD08G1102600 Malus domestica HOM05D004504 ORTHO05D005324 2.1e-62 243.4 255 57.6
MBI06_g24649_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 3.6e-62 242.7 271 55.7
MSTRG.24329 Avicennia marina HOM05D004504 ORTHO05D005324 5.2e-61 238.8 269 56.9
Gorai.002G131700 Gossypium raimondii HOM05D004504 ORTHO05D005324 5.2e-61 238.8 263 55.9
MD15G1084100 Malus domestica HOM05D004504 ORTHO05D005324 6.8e-61 238.4 257 58.8
Gohir.A01G119100 Gossypium hirsutum HOM05D004504 ORTHO05D005324 8.9e-61 238.0 264 58.3
Gohir.D01G107300 Gossypium hirsutum HOM05D004504 ORTHO05D005324 2.0e-60 236.9 263 55.5
Lj1g0007502 Lotus japonicus HOM05D004504 ORTHO05D005324 7.6e-60 235.0 266 57.9
Duzib041G0178 Durio zibethinus HOM05D004504 ORTHO05D005324 1.3e-59 234.2 324 50.9
MBI02_g17324_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 3.8e-59 232.6 291 57.7
MBI02_g02958_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 4.9e-59 232.3 291 57.4
Sed0026223 Sechium edule HOM05D004504 ORTHO05D005324 1.4e-58 230.7 300 53.3
Oeu029881.1 Olea europaea HOM05D004504 ORTHO05D005324 1.6e-57 227.3 268 56.0
Sed0027328 Sechium edule HOM05D004504 ORTHO05D005324 1.6e-57 227.3 277 52.7
Glyma.14G082300 Glycine max HOM05D004504 ORTHO05D005324 4.6e-57 225.7 313 55.9
Glyma.17G243000 Glycine max HOM05D004504 ORTHO05D005324 7.8e-57 224.9 283 60.8
Actinidia23268 Actinidia chinensis HOM05D001164 ORTHO05D001031 7.3e-55 218.4 258 58.5
VMungo0647G0958 Vigna mungo HOM05D004504 ORTHO05D005324 3.6e-54 216.1 288 51.7
Peaxi162Scf00064g00008 Petunia axillaris HOM05D004504 ORTHO05D005324 1.1e-53 214.5 285 50.9
Cpa.g.sc49.5 Carica papaya HOM05D004504 ORTHO05D005324 5.3e-53 212.2 282 55.3
Cc10_g04260 Coffea canephora HOM05D004504 ORTHO05D005324 5.3e-53 212.2 348 48.6
Nitab4.5_0001580g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 6.9e-53 211.8 273 50.5
Phvul.001G021300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 1.5e-52 210.7 283 52.7
Lalb_Chr22g0355171 Lupinus albus HOM05D004504 ORTHO05D005324 3.4e-52 209.5 297 50.5
PSO170G6689 Papaver somniferum HOM05D004504 ORTHO05D005324 9.9e-52 208.0 301 49.8
MELO3C010878.2 Cucumis melo HOM05D004504 ORTHO05D005324 2.2e-51 206.8 271 48.7
AUR62022419 Chenopodium quinoa HOM05D004504 ORTHO05D005324 3.8e-51 206.1 341 44.3
DCAR_012769 Daucus carota HOM05D004504 ORTHO05D005324 4.2e-50 202.6 286 47.2
PSO210G2137 Papaver somniferum HOM05D004504 ORTHO05D005324 2.7e-49 199.9 291 51.9
DCAR_019457 Daucus carota HOM05D004504 ORTHO05D005324 1.0e-48 198.0 291 45.7
Eucgr.F00237 Eucalyptus grandis HOM05D004504 ORTHO05D005324 1.0e-48 198.0 246 52.4
HanXRQChr09g0267891 Helianthus annuus HOM05D004504 ORTHO05D005324 1.3e-48 197.6 310 45.5
Lalb_Chr23g0267021 Lupinus albus HOM05D004504 ORTHO05D005324 8.7e-48 194.9 282 50.4
Gohir.A06G017400 Gossypium hirsutum HOM05D004504 ORTHO05D005324 5.6e-47 192.2 263 50.2
Lsat_1_v5_gn_6_114061 Lactuca sativa HOM05D004504 ORTHO05D005324 5.6e-47 192.2 298 43.6
Aa31LG9G12800 Aethionema arabicum HOM05D004504 ORTHO05D005324 7.3e-47 191.8 307 45.0
Aqoxy6G01353 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 3.6e-46 189.5 305 53.8
Sed0004281 Sechium edule HOM05D004504 ORTHO05D005324 3.6e-46 189.5 266 50.0
PGR083G0364 Punica granatum HOM05D004504 ORTHO05D005324 6.2e-46 188.7 312 50.0
AL8G18380 Arabidopsis lyrata HOM05D004504 ORTHO05D005324 1.4e-45 187.6 311 46.6
Solyc04g079110.1 Solanum lycopersicum HOM05D004504 ORTHO05D005324 1.8e-45 187.2 286 50.3
PGSC0003DMG400008020 Solanum tuberosum HOM05D004504 ORTHO05D005324 2.4e-45 186.8 293 45.7
Medtr3g101560 Medicago truncatula HOM05D004504 ORTHO05D005324 3.1e-45 186.4 306 45.1
Sopen04g032720 Solanum pennellii HOM05D004504 ORTHO05D005324 1.2e-44 184.5 292 46.9
AT5G42750 Arabidopsis thaliana HOM05D004504 ORTHO05D005324 1.5e-44 184.1 333 44.7
arahy.Tifrunner.gnm1.ann1.2LG1YU Arachis hypogaea HOM05D004504 ORTHO05D005324 3.4e-44 183.0 291 47.1
Peaxi162Scf00252g00123 Petunia axillaris HOM05D004504 ORTHO05D005324 4.5e-44 182.6 282 48.9
A02p27570 Brassica napus HOM05D004504 ORTHO05D005324 5.8e-44 182.2 307 46.3
BraA02t07790Z Brassica rapa HOM05D004504 ORTHO05D005324 5.8e-44 182.2 307 46.3
Lsat_1_v5_gn_4_125561 Lactuca sativa HOM05D004504 ORTHO05D005324 1.3e-43 181.0 332 43.4
SHI08291 Sapria himalayana HOM05D004504 ORTHO05D005324 1.3e-43 181.0 298 46.6
BcaB07g30603 Brassica carinata HOM05D004504 ORTHO05D005324 1.7e-43 180.6 306 46.7
Lj5g0012770 Lotus japonicus HOM05D004504 ORTHO05D005324 2.9e-43 179.9 322 47.5
Rhsim06G0048600 Rhododendron simsii HOM05D004504 ORTHO05D005324 4.9e-43 179.1 309 52.8
Thhalv10003420m.g Eutrema salsugineum HOM05D004504 ORTHO05D005324 6.4e-43 178.7 312 49.7
SalBow7G1688 Salvia bowleyana HOM05D004504 ORTHO05D005324 1.4e-42 177.6 275 53.5
Nn1g04891 Nelumbo nucifera HOM05D004504 ORTHO05D005324 4.2e-42 176.0 220 57.7
Carub.0008s0620 Capsella rubella HOM05D004504 ORTHO05D005324 7.1e-42 175.3 310 44.5
Dinv39324 Davidia involucrata HOM05D004504 ORTHO05D005324 7.1e-42 175.3 203 60.6
Medtr1g019750 Medicago truncatula HOM05D004504 ORTHO05D005324 7.1e-42 175.3 296 50.7
MSTRG.1340 Avicennia marina HOM05D004504 ORTHO05D005324 1.2e-41 174.5 312 50.3
Dinv35969 Davidia involucrata HOM05D004504 ORTHO05D005324 1.2e-41 174.5 261 51.3
BolC2t10378H Brassica oleracea HOM05D004504 ORTHO05D005324 2.1e-41 173.7 307 46.3
HPP92_016728 Vanilla planifolia HOM05D004504 ORTHO05D005324 2.1e-41 173.7 309 41.1
CAN.G1422.9 Capsicum annuum HOM05D000541 ORTHO05D000137 6.0e-41 172.2 364 37.9
EL10Ac1g01723 Beta vulgaris HOM05D004504 ORTHO05D005324 7.9e-41 171.8 347 43.8
PGSC0003DMG400015442 Solanum tuberosum HOM05D004504 ORTHO05D005324 1.0e-40 171.4 273 47.3
TPR.G28115 Trifolium pratense HOM05D004504 ORTHO05D005324 1.0e-40 171.4 241 50.2
CARHR181660 Cardamine hirsuta HOM05D004504 ORTHO05D005324 2.3e-40 170.2 314 45.5
Lalb_Chr24g0399251 Lupinus albus HOM05D004504 ORTHO05D005324 3.0e-40 169.9 316 41.8
PSO675G2195 Papaver somniferum HOM05D004504 ORTHO05D005324 3.0e-40 169.9 264 45.8
CDE02G0300 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 5.1e-40 169.1 305 45.9
Gohir.D06G015500 Gossypium hirsutum HOM05D004504 ORTHO05D005324 6.7e-40 168.7 264 46.6
PSO541G3526 Papaver somniferum HOM05D004504 ORTHO05D005324 6.7e-40 168.7 266 46.6
AUR62042173 Chenopodium quinoa HOM05D004504 ORTHO05D005324 8.7e-40 168.3 308 42.2
BcaC03g16510 Brassica carinata HOM05D004504 ORTHO05D005324 1.1e-39 167.9 307 45.9
C02p43260 Brassica napus HOM05D004504 ORTHO05D005324 1.1e-39 167.9 307 45.9
Actinidia22620 Actinidia chinensis HOM05D001164 ORTHO05D001031 6.2e-38 162.2 205 55.6
Atru.chr13.656 Acer truncatum HOM05D004504 ORTHO05D005324 8.1e-38 161.8 254 51.6
HanXRQChr16g0507531 Helianthus annuus HOM05D004504 ORTHO05D005324 8.1e-38 161.8 271 45.0
Sopen12g030760 Solanum pennellii HOM05D004504 ORTHO05D005324 8.1e-38 161.8 272 46.0
TPR.G17544 Trifolium pratense HOM05D004504 ORTHO05D005324 1.4e-37 161.0 294 50.0
CDE06G1443 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 1.8e-37 160.6 274 46.0
THA.LOC104804561 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 5.3e-37 159.1 282 44.0
SGA_v2.0_scaffold14G07036 Striga asiatica HOM05D004504 ORTHO05D005324 6.9e-37 158.7 220 48.6
RcHm_v2.0_Chr6g0307601 Rosa chinensis HOM05D004504 ORTHO05D005324 1.5e-36 157.5 264 45.1
Migut.N02706 Erythranthe guttata HOM05D004504 ORTHO05D005324 2.6e-36 156.8 270 50.7
Sp2g07370 Schrenkiella parvula HOM05D004504 ORTHO05D005324 2.6e-36 156.8 309 43.7
Gorai.010G018300 Gossypium raimondii HOM05D004504 ORTHO05D005324 2.9e-35 153.3 264 53.0
GSVIVG01009517001 Vitis vinifera HOM05D004504 ORTHO05D005324 8.4e-35 151.8 123 74.0
Oeu057287.1 Olea europaea HOM05D004504 ORTHO05D005324 1.1e-34 151.4 191 51.8
THA.LOC104806943 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 2.5e-34 150.2 310 42.9
CAN.G371.30 Capsicum annuum HOM05D004504 ORTHO05D005324 1.0e-32 144.8 307 41.4
Lj4P774T14 Lonicera japonica HOM05D004504 ORTHO05D005324 1.3e-32 144.4 209 47.8
CDE02G3707 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 1.6e-30 137.5 266 43.2
PGR031G2315 Punica granatum HOM05D004504 ORTHO05D005324 4.8e-30 136.0 302 38.4
Sc15g0006190 Simmondsia chinensis HOM05D004504 ORTHO05D005324 6.5e-27 125.6 242 38.8
Sc15g0006270 Simmondsia chinensis HOM05D004504 ORTHO05D005324 6.5e-27 125.6 242 38.8
unitig_899.g15623 Utricularia gibba HOM05D004504 ORTHO05D005324 6.5e-27 125.6 269 39.0
Lj4P54T34 Lonicera japonica HOM05D004504 ORTHO05D005324 6.1e-25 119.0 80 75.0
Nitab4.5_0007986g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 6.1e-25 119.0 212 40.1
Oeu044838.1 Olea europaea HOM05D004504 ORTHO05D005324 6.1e-25 119.0 158 53.2
Psat6g012120 Pisum sativum HOM05D004504 ORTHO05D005324 2.5e-23 113.6 275 37.1
CDE09G0998 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 1.2e-20 104.8 264 36.0
Eucgr.F02356 Eucalyptus grandis HOM05D004504 ORTHO05D005324 2.0e-20 104.0 259 37.5
ATR0100G018 Amborella trichopoda HOM05D004504 ORTHO05D005324 1.4e-16 91.3 145 43.4
unitig_26.g10024 Utricularia gibba HOM05D004504 ORTHO05D005324 2.3e-16 90.5 257 35.4
SGA_v2.0_scaffold208G41968 Striga asiatica HOM05D004504 ORTHO05D005324 1.5e-12 77.8 302 35.8
unitig_749.g13680 Utricularia gibba HOM05D004504 ORTHO05D005324 2.6e-12 77.0 254 31.9
Oeu011558.1 Olea europaea HOM05D004504 ORTHO05D005324 4.5e-12 76.3 106 55.7
SalBow2G2132 Salvia bowleyana HOM05D004504 ORTHO05D005324 4.5e-12 76.3 57 75.4
Zm00001eb315000 Zea mays HOM05D004504 ORTHO05D005324 3.8e-11 73.2 152 40.1
CDE09G1057 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 8.5e-11 72.0 262 30.2
THA.LOC109116829 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 4.7e-09 66.2 112 42.0
Dinv44508 Davidia involucrata HOM05D006303 ORTHO05D008007 7.9e-09 65.5 282 27.7
Sc13g0004270 Simmondsia chinensis HOM05D006303 ORTHO05D008007 1.8e-08 64.3 282 30.1
Manes.03G181100 Manihot esculenta HOM05D006303 ORTHO05D008007 1.1e-07 61.6 345 24.1
Os09g0459500 Oryza sativa ssp. japonica HOM05D004504 ORTHO05D005324 1.5e-07 61.2 64 56.2
unitig_744.g24589 Utricularia gibba HOM05D004504 ORTHO05D005324 2.0e-07 60.8 253 30.8
SEGI_38862 Sequoiadendron giganteum HOM05D006303 ORTHO05D008007 3.3e-07 60.1 84 48.8
Lsat_1_v5_gn_5_148441 Lactuca sativa HOM05D006303 ORTHO05D008007 5.7e-07 59.3 321 28.0
ECA234G3153 Erigeron canadensis HOM05D006303 ORTHO05D008007 9.7e-07 58.5 326 27.0
HanXRQChr15g0466041 Helianthus annuus HOM05D006303 ORTHO05D008007 9.7e-07 58.5 325 27.4
CiPaw.01G163800 Carya illinoinensis HOM05D006303 ORTHO05D008007 2.8e-06 57.0 334 25.7
Os08g0474500 Oryza sativa ssp. japonica HOM05D004504 ORTHO05D005324 4.8e-06 56.2 47 68.1
BcaC04g23610 Brassica carinata HOM05D006303 ORTHO05D008007 6.3e-06 55.8 298 26.2
Nn4g26265 Nelumbo nucifera HOM05D006303 ORTHO05D008007 6.3e-06 55.8 324 25.0


User provided reference genes

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