Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G0761 Trochodendron aralioides HOM05D005825 ORTHO05D006483 1.9e-78 295.8 157 100.0
TAR625G0074 Trochodendron aralioides HOM05D005825 ORTHO05D006483 1.3e-58 229.9 151 86.1
Nn2g12789 Nelumbo nucifera HOM05D005825 ORTHO05D006483 2.7e-48 195.7 155 66.5
PSO782G3266 Papaver somniferum HOM05D005825 ORTHO05D006483 2.3e-47 192.6 152 70.4
PSO675G5818 Papaver somniferum HOM05D005825 ORTHO05D006483 5.1e-47 191.4 152 66.4
MELO3C004508.2 Cucumis melo HOM05D005825 ORTHO05D006483 1.5e-46 189.9 151 70.2
ClCG11G003030 Citrullus lanatus HOM05D005825 ORTHO05D006483 2.6e-46 189.1 151 68.9
Sed0008025 Sechium edule HOM05D005825 ORTHO05D006483 7.4e-46 187.6 151 62.9
Aqoxy5G01398 Aquilegia oxysepala HOM05D005825 ORTHO05D006483 2.2e-45 186.0 151 70.2
CsaV3_2G002850 Cucumis sativus L. HOM05D005825 ORTHO05D006483 3.7e-45 185.3 151 69.5
CANSAT11G1244 Cannabis sativa HOM05D005825 ORTHO05D006483 8.2e-45 184.1 151 66.9
Dinv36528 Davidia involucrata HOM05D005825 ORTHO05D006483 2.0e-43 179.5 154 67.5
Lalb_Chr13g0301881 Lupinus albus HOM05D005825 ORTHO05D006483 2.2e-42 176.0 152 61.2
Cpa.g.sc75.29 Carica papaya HOM05D005825 ORTHO05D006483 6.5e-42 174.5 151 58.3
arahy.Tifrunner.gnm1.ann1.9UEQ51 Arachis hypogaea HOM05D005825 ORTHO05D006483 4.2e-41 171.8 151 57.6
Phvul.003G164300 Phaseolus vulgaris HOM05D005825 ORTHO05D006483 7.2e-41 171.0 152 63.2
arahy.Tifrunner.gnm1.ann1.1NB5KJ Arachis hypogaea HOM05D005825 ORTHO05D006483 1.6e-40 169.9 151 57.6
CARHR118580 Cardamine hirsuta HOM05D005825 ORTHO05D006483 3.6e-40 168.7 151 59.6
A04p21320 Brassica napus HOM05D005825 ORTHO05D006483 6.1e-40 167.9 154 65.6
BraA04t17698Z Brassica rapa HOM05D005825 ORTHO05D006483 6.1e-40 167.9 154 65.6
Thhalv10002044m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 6.1e-40 167.9 151 58.9
Sp4g09150 Schrenkiella parvula HOM05D005825 ORTHO05D006483 6.1e-40 167.9 149 57.7
BcaB06g28186 Brassica carinata HOM05D005825 ORTHO05D006483 1.0e-39 167.2 152 64.5
Glyma.13G167400 Glycine max HOM05D005825 ORTHO05D006483 1.4e-39 166.8 152 59.2
Hund09127 Selenicereus undatus HOM05D005825 ORTHO05D006483 1.8e-39 166.4 151 56.3
MBI16_g24711_MAGBIO Magnolia biondii HOM05D005825 ORTHO05D006483 2.3e-39 166.0 150 62.0
Medtr4g114160 Medicago truncatula HOM05D005825 ORTHO05D006483 3.9e-39 165.2 153 65.4
Psat4g040200 Pisum sativum HOM05D005825 ORTHO05D006483 3.9e-39 165.2 153 61.4
Ca_21683_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 5.2e-39 164.9 153 58.2
Carub.0004s0696 Capsella rubella HOM05D005825 ORTHO05D006483 6.7e-39 164.5 151 59.6
AUR62011128 Chenopodium quinoa HOM05D005825 ORTHO05D006483 8.8e-39 164.1 152 57.2
QL10p023454 Quercus lobata HOM05D005825 ORTHO05D006483 1.5e-38 163.3 154 57.1
C04p57230 Brassica napus HOM05D005825 ORTHO05D006483 2.0e-38 162.9 153 66.0
AL4G19680 Arabidopsis lyrata HOM05D005825 ORTHO05D006483 2.6e-38 162.5 154 58.4
CSS0017066 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 2.6e-38 162.5 151 62.9
CSS0027185 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 7.4e-38 161.0 151 62.3
vmacro20556 Vaccinium macrocarpon HOM05D005825 ORTHO05D006483 7.4e-38 161.0 150 54.7
Lalb_Chr12g0197941 Lupinus albus HOM05D005825 ORTHO05D006483 9.7e-38 160.6 151 55.6
arahy.Tifrunner.gnm1.ann1.R6UVTB Arachis hypogaea HOM05D005825 ORTHO05D006483 1.3e-37 160.2 151 59.6
BolC4t27250H Brassica oleracea HOM05D005825 ORTHO05D006483 1.3e-37 160.2 159 62.3
Haze_25579 Corylus avellana HOM05D005825 ORTHO05D006483 1.3e-37 160.2 153 58.8
PGR142G1018 Punica granatum HOM05D005825 ORTHO05D006483 1.3e-37 160.2 156 53.2
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 1.7e-37 159.8 153 56.9
EL10Ac8g18654 Beta vulgaris HOM05D005825 ORTHO05D006483 1.7e-37 159.8 151 55.6
BcaC02g08209 Brassica carinata HOM05D005825 ORTHO05D006483 1.7e-37 159.8 160 61.9
AT2G26680 Arabidopsis thaliana HOM05D005825 ORTHO05D006483 2.2e-37 159.5 154 57.1
CiPaw.03G244100 Carya illinoinensis HOM05D005825 ORTHO05D006483 2.8e-37 159.1 153 57.5
Rhsim01G0070600 Rhododendron simsii HOM05D005825 ORTHO05D006483 2.8e-37 159.1 153 62.1
arahy.Tifrunner.gnm1.ann1.85XGXJ Arachis hypogaea HOM05D005825 ORTHO05D006483 3.7e-37 158.7 151 58.9
THA.LOC104815280 Tarenaya hassleriana HOM05D005825 ORTHO05D006483 8.2e-37 157.5 152 53.9
Atru.chr7.1162 Acer truncatum HOM05D005825 ORTHO05D006483 1.1e-36 157.1 157 59.2
Cfa003372 Carpinus fangiana HOM05D005825 ORTHO05D006483 1.1e-36 157.1 153 56.9
DCAR_009187 Daucus carota HOM05D005825 ORTHO05D006483 1.4e-36 156.8 151 53.6
Rhsim01G0071200 Rhododendron simsii HOM05D005825 ORTHO05D006483 1.8e-36 156.4 156 61.5
DCAR_017816 Daucus carota HOM05D005825 ORTHO05D006483 4.1e-36 155.2 152 53.9
VMungo1215G3451 Vigna mungo HOM05D005825 ORTHO05D006483 4.1e-36 155.2 153 53.6
Ciclev10008932m.g Citrus clementina HOM05D005825 ORTHO05D006483 5.3e-36 154.8 153 57.5
Lsat_1_v5_gn_8_58680 Lactuca sativa HOM05D005825 ORTHO05D006483 5.3e-36 154.8 154 52.6
Sc08g0006620 Simmondsia chinensis HOM05D005825 ORTHO05D006483 5.3e-36 154.8 156 59.0
Thhalv10023596m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 1.2e-35 153.7 151 54.3
FAN23G1198 Fragaria x ananassa HOM05D005825 ORTHO05D006483 3.5e-35 152.1 157 59.9
Lj4g0013357 Lotus japonicus HOM05D005825 ORTHO05D006483 3.5e-35 152.1 155 60.6
MD02G1032800 Malus domestica HOM05D005825 ORTHO05D006483 4.5e-35 151.8 156 55.8
Actinidia40470 Actinidia chinensis HOM05D005825 ORTHO05D006483 5.9e-35 151.4 151 60.9
Ca_13270_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 5.9e-35 151.4 153 57.5
RcHm_v2.0_Chr2g0088431 Rosa chinensis HOM05D005825 ORTHO05D006483 7.7e-35 151.0 156 59.0
FAN26G2420 Fragaria x ananassa HOM05D005825 ORTHO05D006483 1.3e-34 150.2 157 59.2
Ah.09g226210 Amaranthus hybridus HOM05D005825 ORTHO05D006483 2.2e-34 149.4 156 57.7
CAN.G1591.11 Capsicum annuum HOM05D005825 ORTHO05D006483 5.0e-34 148.3 150 50.0
FvH4_1g03280 Fragaria vesca HOM05D005825 ORTHO05D006483 5.0e-34 148.3 158 58.2
FAN19G0135 Fragaria x ananassa HOM05D005825 ORTHO05D006483 5.0e-34 148.3 158 58.2
Solyc12g009430.2 Solanum lycopersicum HOM05D005825 ORTHO05D006483 5.0e-34 148.3 151 53.0
Sopen12g004430 Solanum pennellii HOM05D005825 ORTHO05D006483 5.0e-34 148.3 154 52.6
PGSC0003DMG400002918 Solanum tuberosum HOM05D005825 ORTHO05D006483 5.0e-34 148.3 151 53.0
Lj2C942T8 Lonicera japonica HOM05D005825 ORTHO05D006483 6.5e-34 147.9 152 54.6
Ca_14592_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 8.5e-34 147.5 153 60.1
Eucgr.C01173 Eucalyptus grandis HOM05D005825 ORTHO05D006483 8.5e-34 147.5 155 55.5
FAN28G2006 Fragaria x ananassa HOM05D005825 ORTHO05D006483 8.5e-34 147.5 157 61.1
Migut.B01717 Erythranthe guttata HOM05D005825 ORTHO05D006483 1.1e-33 147.1 152 48.7
Peaxi162Scf00157g01524 Petunia axillaris HOM05D005825 ORTHO05D006483 1.1e-33 147.1 151 53.0
Nitab4.5_0002658g0050 Nicotiana tabacum HOM05D005825 ORTHO05D006483 1.9e-33 146.4 152 51.3
Hma1.2p1_0018F.1_g012420 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 3.2e-33 145.6 149 58.4
Hma1.2p1_2368F.1_g320700 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 3.2e-33 145.6 149 58.4
Nitab4.5_0014105g0010 Nicotiana tabacum HOM05D005825 ORTHO05D006483 5.5e-33 144.8 152 50.7
Oeu007499.1 Olea europaea HOM05D005825 ORTHO05D006483 9.4e-33 144.1 159 49.7
Prupe.7G242700 Prunus persica HOM05D005825 ORTHO05D006483 1.2e-32 143.7 152 53.3
SalBow3G4290 Salvia bowleyana HOM05D005825 ORTHO05D006483 1.2e-32 143.7 151 47.0
MSTRG.19597 Avicennia marina HOM05D005825 ORTHO05D006483 1.6e-32 143.3 151 47.7
unitig_748.g8100 Utricularia gibba HOM05D005825 ORTHO05D006483 1.6e-32 143.3 154 48.1
SGA_v2.0_scaffold299G47720 Striga asiatica HOM05D005825 ORTHO05D006483 3.6e-32 142.1 151 48.3
Lj2A929T15 Lonicera japonica HOM05D005825 ORTHO05D006483 6.1e-32 141.4 156 53.2
AUR62013360 Chenopodium quinoa HOM05D005825 ORTHO05D006483 1.8e-31 139.8 116 62.1
Sabra02G0094300 Salix brachista HOM05D005825 ORTHO05D006483 3.0e-31 139.0 151 53.0
TWI34G0282 Tripterygium wilfordii HOM05D005825 ORTHO05D006483 3.0e-31 139.0 163 51.5
Sabra14G0011800 Salix brachista HOM05D005825 ORTHO05D006483 6.7e-31 137.9 151 53.6
Duzib168G1077 Durio zibethinus HOM05D005825 ORTHO05D006483 1.5e-30 136.7 153 48.4
Thecc.09G126400 Theobroma cacao HOM05D005825 ORTHO05D006483 2.0e-30 136.3 153 48.4
Potri.014G017900 Populus trichocarpa HOM05D005825 ORTHO05D006483 5.7e-30 134.8 151 55.0
Manes.06G058801 Manihot esculenta HOM05D005825 ORTHO05D006483 1.3e-29 133.7 160 53.1
Gohir.D06G054601 Gossypium hirsutum HOM05D005825 ORTHO05D006483 3.7e-29 132.1 153 47.1
Gorai.010G064100 Gossypium raimondii HOM05D005825 ORTHO05D006483 3.7e-29 132.1 153 47.1
Gohir.A06G056101 Gossypium hirsutum HOM05D005825 ORTHO05D006483 4.8e-29 131.7 156 53.8
CDE04G1080 Ceratophyllum demersum HOM05D005825 ORTHO05D006483 8.2e-29 131.0 153 49.7
SHI03392 Sapria himalayana HOM05D005825 ORTHO05D006483 1.1e-28 130.6 154 48.7
HanXRQChr06g0180341 Helianthus annuus HOM05D005825 ORTHO05D006483 5.3e-28 128.3 151 45.7
HanXRQChr17g0537711 Helianthus annuus HOM05D005825 ORTHO05D006483 7.0e-28 127.9 151 53.0
HanXRQChr17g0537731 Helianthus annuus HOM05D005825 ORTHO05D006483 5.0e-26 121.7 151 45.0
HPP92_017605 Vanilla planifolia HOM05D005825 ORTHO05D006483 5.0e-26 121.7 86 69.8
VMungo0647G0470 Vigna mungo HOM05D005825 ORTHO05D006483 6.1e-24 114.8 86 61.6
ATR0225G021 Amborella trichopoda HOM05D005825 ORTHO05D006483 1.4e-23 113.6 86 69.8
Zm00001eb043030 Zea mays HOM05D005825 ORTHO05D006483 1.5e-22 110.2 88 62.5
Os03g0566600 Oryza sativa ssp. japonica HOM05D005825 ORTHO05D006483 1.7e-21 106.7 86 61.6
SMO147G0115 Selaginella moellendorffii HOM05D005825 ORTHO05D006483 4.7e-16 88.6 86 53.5
AagrBONN_evm.TU.Sc2ySwM_344.1792 Anthoceros agrestis HOM05D005825 ORTHO05D006483 2.6e-14 82.8 91 50.5
SalBow6G2945 Salvia bowleyana HOM05D000060 ORTHO05D000082 7.8e-11 71.2 131 37.4


User provided reference genes

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