Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G0713 Trochodendron aralioides HOM05D004816 ORTHO05D006043 2.4e-213 745.3 400 100.0
TAR625G0829 Trochodendron aralioides HOM05D004816 ORTHO05D006043 4.1e-173 611.7 381 88.5
GSVIVG01031842001 Vitis vinifera HOM05D004816 ORTHO05D006043 1.7e-147 526.6 389 74.8
MBI16_g31473_MAGBIO Magnolia biondii HOM05D004816 ORTHO05D006043 1.1e-146 523.9 385 74.8
Dinv23600 Davidia involucrata HOM05D004816 ORTHO05D006043 4.0e-144 515.4 366 75.4
Cfa004941 Carpinus fangiana HOM05D004816 ORTHO05D006043 3.7e-142 508.8 362 75.1
Nn6g32127 Nelumbo nucifera HOM05D004816 ORTHO05D006043 1.4e-141 506.9 384 72.9
Aqoxy6G00919 Aquilegia oxysepala HOM05D004816 ORTHO05D006043 1.1e-138 497.3 379 71.8
PSO675G8525 Papaver somniferum HOM05D004816 ORTHO05D006043 1.8e-136 490.0 390 72.8
PSO541G0848 Papaver somniferum HOM05D004816 ORTHO05D006043 4.4e-135 485.3 390 73.1
CSS0036891 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 5.7e-135 485.0 362 73.8
Atru.chr5.2842 Acer truncatum HOM05D004816 ORTHO05D006043 1.3e-134 483.8 374 70.3
Ca_12466_v3 Cicer arietinum L. HOM05D004816 ORTHO05D006043 2.9e-131 472.6 396 66.2
Thecc.02G094000 Theobroma cacao HOM05D004816 ORTHO05D006043 9.5e-130 467.6 363 73.0
QL11p039002 Quercus lobata HOM05D004816 ORTHO05D006043 2.1e-129 466.5 358 71.2
QL11p040287 Quercus lobata HOM05D004816 ORTHO05D006043 2.1e-129 466.5 358 71.2
Actinidia17843 Actinidia chinensis HOM05D004816 ORTHO05D006043 1.0e-128 464.2 347 73.2
Haze_02469 Corylus avellana HOM05D004816 ORTHO05D006043 1.0e-128 464.2 386 67.6
Duzib132G0866 Durio zibethinus HOM05D004816 ORTHO05D006043 2.3e-128 463.0 366 72.1
Duzib248G0025 Durio zibethinus HOM05D004816 ORTHO05D006043 7.5e-127 458.0 367 69.5
Lalb_Chr10g0095411 Lupinus albus HOM05D004816 ORTHO05D006043 6.4e-126 454.9 394 64.2
Glyma.20G009200 Glycine max HOM05D004816 ORTHO05D006043 1.1e-125 454.1 375 65.9
Rhsim05G0079600 Rhododendron simsii HOM05D004816 ORTHO05D006043 7.0e-125 451.4 386 66.8
CiPaw.06G139500 Carya illinoinensis HOM05D004816 ORTHO05D006043 2.0e-124 449.9 376 67.3
COL.COLO4_11733 Corchorus olitorius HOM05D004816 ORTHO05D006043 2.0e-124 449.9 348 73.9
TWI31G1354 Tripterygium wilfordii HOM05D004816 ORTHO05D006043 2.0e-124 449.9 388 67.0
Medtr1g034170 Medicago truncatula HOM05D004816 ORTHO05D006043 4.6e-124 448.7 364 67.6
Potri.009G107800 Populus trichocarpa HOM05D004816 ORTHO05D006043 4.6e-124 448.7 350 72.6
Gohir.A12G026800 Gossypium hirsutum HOM05D004816 ORTHO05D006043 1.7e-123 446.8 368 69.6
Phvul.003G011700 Phaseolus vulgaris HOM05D004816 ORTHO05D006043 1.7e-123 446.8 388 64.4
Lj5A205G67 Lonicera japonica HOM05D004816 ORTHO05D006043 1.5e-122 443.7 372 66.4
Sopen01g051090 Solanum pennellii HOM05D004816 ORTHO05D006043 1.5e-122 443.7 380 63.2
Solyc01g108890.3 Solanum lycopersicum HOM05D004816 ORTHO05D006043 7.3e-122 441.4 380 62.6
PGSC0003DMG402025925 Solanum tuberosum HOM05D004816 ORTHO05D006043 1.2e-121 440.7 377 62.9
arahy.Tifrunner.gnm1.ann1.WD2X18 Arachis hypogaea HOM05D004816 ORTHO05D006043 2.8e-121 439.5 416 60.3
MD10G1088000 Malus domestica HOM05D004816 ORTHO05D006043 4.7e-121 438.7 384 67.7
arahy.Tifrunner.gnm1.ann1.D5RGK8 Arachis hypogaea HOM05D004816 ORTHO05D006043 1.0e-120 437.6 416 60.1
Manes.17G095600 Manihot esculenta HOM05D004816 ORTHO05D006043 4.0e-120 435.6 408 63.5
Gorai.008G026600 Gossypium raimondii HOM05D004816 ORTHO05D006043 2.0e-119 433.3 366 68.0
Gohir.D12G026300 Gossypium hirsutum HOM05D004816 ORTHO05D006043 5.8e-119 431.8 366 67.8
Sabra09G0082300 Salix brachista HOM05D004816 ORTHO05D006043 6.4e-118 428.3 395 63.5
CANSAT25G1860 Cannabis sativa HOM05D004816 ORTHO05D006043 2.4e-117 426.4 382 65.4
CsaV3_7G010070 Cucumis sativus L. HOM05D004816 ORTHO05D006043 2.4e-117 426.4 347 68.0
MELO3C018421.2 Cucumis melo HOM05D004816 ORTHO05D006043 9.2e-117 424.5 348 68.1
Cpa.g.sc62.70 Carica papaya HOM05D004816 ORTHO05D006043 1.2e-116 424.1 366 65.8
Psat6g096400 Pisum sativum HOM05D004816 ORTHO05D006043 3.5e-116 422.5 396 61.6
Sed0008645 Sechium edule HOM05D004816 ORTHO05D006043 6.6e-115 418.3 348 67.0
ATR0733G051 Amborella trichopoda HOM05D004816 ORTHO05D006043 1.5e-114 417.2 288 74.0
Eucgr.I01207 Eucalyptus grandis HOM05D004816 ORTHO05D006043 1.5e-114 417.2 355 64.8
Actinidia27933 Actinidia chinensis HOM05D004816 ORTHO05D006043 3.3e-114 416.0 345 67.0
Ciclev10028431m.g Citrus clementina HOM05D004816 ORTHO05D006043 3.3e-114 416.0 332 71.4
ClCG02G005580 Citrullus lanatus HOM05D004816 ORTHO05D006043 3.6e-113 412.5 385 64.2
MSTRG.20129 Avicennia marina HOM05D004816 ORTHO05D006043 4.7e-113 412.1 363 61.4
Peaxi162Scf00003g02043 Petunia axillaris HOM05D004816 ORTHO05D006043 1.1e-112 411.0 381 58.8
MD05G1073700 Malus domestica HOM05D004816 ORTHO05D006043 1.4e-112 410.6 376 64.4
Nitab4.5_0009440g0020 Nicotiana tabacum HOM05D004816 ORTHO05D006043 1.4e-112 410.6 380 61.3
TPR.G18619 Trifolium pratense HOM05D004816 ORTHO05D006043 1.4e-112 410.6 349 67.3
PGSC0003DMG400006219 Solanum tuberosum HOM05D004816 ORTHO05D006043 1.8e-112 410.2 358 61.5
BcaC01g03051 Brassica carinata HOM05D004816 ORTHO05D006043 2.0e-111 406.8 378 62.4
C03p56660 Brassica napus HOM05D004816 ORTHO05D006043 2.0e-111 406.8 378 62.4
AL3G47650 Arabidopsis lyrata HOM05D004816 ORTHO05D006043 9.8e-111 404.4 395 61.8
vmacro19471 Vaccinium macrocarpon HOM05D004816 ORTHO05D006043 1.7e-110 403.7 397 61.2
SGA_v2.0_scaffold58G20600 Striga asiatica HOM05D004816 ORTHO05D006043 8.3e-110 401.4 400 58.5
THA.LOC104807346 Tarenaya hassleriana HOM05D004816 ORTHO05D006043 1.4e-109 400.6 382 62.3
AT2G15860 Arabidopsis thaliana HOM05D004816 ORTHO05D006043 1.9e-109 400.2 368 63.9
Sp3g29160 Schrenkiella parvula HOM05D004816 ORTHO05D006043 7.1e-109 398.3 380 61.3
THA.LOC104819592 Tarenaya hassleriana HOM05D004816 ORTHO05D006043 1.2e-108 397.5 357 65.0
Glyma.07G180000 Glycine max HOM05D004816 ORTHO05D006043 3.5e-108 396.0 373 61.1
HPP92_019907 Vanilla planifolia HOM05D004816 ORTHO05D006043 4.6e-108 395.6 391 56.8
BolC3t17950H Brassica oleracea HOM05D004816 ORTHO05D006043 7.8e-108 394.8 398 59.3
PGR142G0866 Punica granatum HOM05D004816 ORTHO05D006043 1.7e-107 393.7 307 68.4
FvH4_2g07090 Fragaria vesca HOM05D004816 ORTHO05D006043 3.0e-107 392.9 293 72.0
BcaC06g36093 Brassica carinata HOM05D004816 ORTHO05D006043 6.6e-107 391.7 374 59.6
VMungo1215G1045 Vigna mungo HOM05D004816 ORTHO05D006043 8.6e-107 391.3 392 59.4
Carub.0003s2975 Capsella rubella HOM05D004816 ORTHO05D006043 3.3e-106 389.4 368 63.6
Os03g0737900 Oryza sativa ssp. japonica HOM05D004816 ORTHO05D006043 1.6e-105 387.1 360 61.1
BcaB03g16336 Brassica carinata HOM05D004816 ORTHO05D006043 3.6e-105 386.0 382 58.9
C07p07890 Brassica napus HOM05D004816 ORTHO05D006043 1.8e-104 383.6 384 58.1
BolC7t41207H Brassica oleracea HOM05D004816 ORTHO05D006043 1.8e-104 383.6 384 58.1
BcaB08g34612 Brassica carinata HOM05D004816 ORTHO05D006043 2.3e-104 383.3 384 60.7
Aa31LG8G13390 Aethionema arabicum HOM05D004816 ORTHO05D006043 4.0e-104 382.5 383 59.8
MSTRG.16772 Avicennia marina HOM05D004816 ORTHO05D006043 6.8e-104 381.7 372 58.9
Nitab4.5_0013034g0040 Nicotiana tabacum HOM05D004816 ORTHO05D006043 3.4e-103 379.4 397 55.2
A03p45610 Brassica napus HOM05D004816 ORTHO05D006043 5.8e-103 378.6 380 60.3
BraA07t28285Z Brassica rapa HOM05D004816 ORTHO05D006043 7.6e-103 378.3 384 58.3
BraA03t13693Z Brassica rapa HOM05D004816 ORTHO05D006043 1.7e-102 377.1 384 60.2
Nitab4.5_0001401g0100 Nicotiana tabacum HOM05D004816 ORTHO05D006043 2.2e-102 376.7 289 68.2
AUR62011413 Chenopodium quinoa HOM05D004816 ORTHO05D006043 2.4e-101 373.2 354 58.8
DCAR_022069 Daucus carota HOM05D004816 ORTHO05D006043 2.4e-101 373.2 330 66.1
Migut.B00299 Erythranthe guttata HOM05D004816 ORTHO05D006043 2.4e-101 373.2 382 57.1
CARHR106200 Cardamine hirsuta HOM05D004816 ORTHO05D006043 3.2e-101 372.9 371 60.6
Thhalv10022638m.g Eutrema salsugineum HOM05D004816 ORTHO05D006043 5.4e-101 372.1 408 56.6
SalBow6G5269 Salvia bowleyana HOM05D004816 ORTHO05D006043 4.6e-100 369.0 379 57.5
AUR62016646 Chenopodium quinoa HOM05D004816 ORTHO05D006043 3.0e-99 366.3 382 57.1
Lj2g0017153 Lotus japonicus HOM05D004816 ORTHO05D001172 6.6e-99 365.2 289 68.5
Cc02_g18320 Coffea canephora HOM05D004816 ORTHO05D006043 1.9e-98 363.6 267 71.9
Hund06195 Selenicereus undatus HOM05D004816 ORTHO05D006043 3.3e-98 362.8 291 67.0
CDE04G3783 Ceratophyllum demersum HOM05D004816 ORTHO05D006043 3.6e-97 359.4 258 70.5
Zm00001eb056520 Zea mays HOM05D004816 ORTHO05D006043 3.6e-97 359.4 285 64.2
FAN15G1865 Fragaria x ananassa HOM05D004816 ORTHO05D006043 1.8e-96 357.1 289 67.8
FAN27G2465 Fragaria x ananassa HOM05D004816 ORTHO05D006043 4.0e-96 355.9 289 67.5
QL06p000730 Quercus lobata HOM05D004816 ORTHO05D006043 4.0e-96 355.9 347 60.5
CDE06G1012 Ceratophyllum demersum HOM05D004816 ORTHO05D006043 1.5e-95 354.0 258 70.5
Haze_02467 Corylus avellana HOM05D004816 ORTHO05D006043 1.3e-94 350.9 238 76.1
CSS0007305 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 4.9e-94 349.0 370 58.9
HanXRQChr10g0303411 Helianthus annuus HOM05D004816 ORTHO05D006043 2.3e-91 340.1 354 57.3
EL10Ac9g21805 Beta vulgaris HOM05D004816 ORTHO05D006043 7.3e-90 335.1 397 53.4
CAN.G322.72 Capsicum annuum HOM05D004816 ORTHO05D006043 3.6e-89 332.8 267 65.5
RcHm_v2.0_Chr6g0259581 Rosa chinensis HOM05D004816 ORTHO05D006043 4.4e-87 325.9 272 68.8
ECA234G4099 Erigeron canadensis HOM05D004816 ORTHO05D006043 5.4e-85 318.9 283 60.4
Lsat_1_v5_gn_5_117600 Lactuca sativa HOM05D004816 ORTHO05D006043 7.1e-85 318.5 396 49.0
FAN24G2332 Fragaria x ananassa HOM05D004816 ORTHO05D006043 1.2e-84 317.8 289 62.3
Mapoly0087s0083 Marchantia polymorpha HOM05D004816 ORTHO05D006043 4.6e-84 315.8 379 50.4
Nitab4.5_0005466g0040 Nicotiana tabacum HOM05D004816 ORTHO05D006043 7.9e-84 315.1 316 58.5
Pp3c4_2830 Physcomitrium patens HOM05D004816 ORTHO05D006043 1.0e-83 314.7 402 47.8
A07p04930 Brassica napus HOM05D004816 ORTHO05D006043 2.3e-83 313.5 269 62.8
unitig_21.g20758 Utricularia gibba HOM05D004816 ORTHO05D006043 3.0e-83 313.2 380 50.3
Prupe.8G114000 Prunus persica HOM05D004816 ORTHO05D006043 5.6e-82 308.9 355 56.9
SEGI_09196 Sequoiadendron giganteum HOM05D004816 ORTHO05D006043 2.8e-81 306.6 237 65.4
AagrBONN_evm.TU.Sc2ySwM_228.2260 Anthoceros agrestis HOM05D004816 ORTHO05D006043 3.6e-81 306.2 383 49.3
SMO347G0163 Selaginella moellendorffii HOM05D004816 ORTHO05D006043 1.4e-77 294.3 362 48.6
Oeu021929.4 Olea europaea HOM05D004816 ORTHO05D006043 2.5e-74 283.5 305 54.8
QL08p015136 Quercus lobata HOM05D004816 ORTHO05D000106 1.3e-70 271.2 231 64.1
QL08p015067 Quercus lobata HOM05D004816 ORTHO05D000106 1.7e-70 270.8 231 64.1
CSS0019035 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 2.0e-63 247.3 322 54.3
SHI18146 Sapria himalayana HOM05D004816 ORTHO05D006043 7.6e-63 245.4 453 39.7
Manes.15G144501 Manihot esculenta HOM05D004816 ORTHO05D006043 1.7e-54 217.6 188 70.7
Sc08g0000220 Simmondsia chinensis HOM05D004816 ORTHO05D006043 1.4e-45 188.0 163 63.2
Dinv42115 Davidia involucrata HOM05D004816 ORTHO05D000337 1.0e-38 165.2 141 67.4
Oeu057669.2 Olea europaea HOM05D004816 ORTHO05D006043 5.2e-35 152.9 176 58.5
Sc08g0000210 Simmondsia chinensis HOM05D004816 ORTHO05D006043 5.7e-34 149.4 108 70.4
Lsat_1_v5_gn_4_68061 Lactuca sativa HOM05D004816 ORTHO05D006043 1.4e-27 128.3 198 48.5
SEGI_20581 Sequoiadendron giganteum HOM05D004816 ORTHO05D006043 8.8e-27 125.6 136 58.1
Lsat_1_v5_gn_4_111080 Lactuca sativa HOM05D004816 ORTHO05D006043 6.8e-19 99.4 205 38.0
arahy.Tifrunner.gnm1.ann1.JF64TB Arachis hypogaea HOM05D004816 ORTHO05D006043 2.8e-17 94.0 111 55.9
arahy.Tifrunner.gnm1.ann1.MV8GC5 Arachis hypogaea HOM05D004816 ORTHO05D006043 4.1e-16 90.1 119 50.4
RcHm_v2.0_Chr6g0259571 Rosa chinensis HOM05D004816 ORTHO05D006043 3.5e-15 87.0 53 79.2
DCAR_015855 Daucus carota HOM05D004816 ORTHO05D006043 4.5e-15 86.7 108 52.8
CSS0032400 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 1.6e-12 78.2 154 40.3
Sabra01G0122300 Salix brachista HOM05D000001 ORTHO05D004986 3.6e-12 77.0 99 54.5
Atru.chr8.2606 Acer truncatum HOM05D004816 ORTHO05D006043 6.1e-12 76.3 63 57.1
Nitab4.5_0000876g0230 Nicotiana tabacum HOM05D000224 ORTHO05D000337 2.0e-10 71.2 45 73.3
Cre06.g302850 Chlamydomonas reinhardtii HOM05D004816 ORTHO05D006043 3.7e-09 67.0 191 29.8
CSS0045496 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 3.5e-07 60.5 153 35.9
CSS0009254 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 4.6e-07 60.1 148 35.1
CAN.G322.73 Capsicum annuum HOM05D004816 ORTHO05D006043 1.3e-06 58.5 64 57.8
CSS0012251 Camellia sinensis var. sinensis HOM05D000224 ORTHO05D006043 3.9e-06 57.0 129 38.0
CSS0049387 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 8.6e-06 55.8 46 69.6
Gohir.A01G005533 Gossypium hirsutum HOM05D004816 ORTHO05D006043 8.6e-06 55.8 38 71.1


User provided reference genes

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