Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G0701 Trochodendron aralioides HOM05D005114 ORTHO05D006301 5.6e-89 330.9 161 100.0
TAR628G1615 Trochodendron aralioides HOM05D005114 ORTHO05D006301 2.4e-71 272.3 161 79.5
TAR376G1108 Trochodendron aralioides HOM05D005114 ORTHO05D006301 2.4e-68 262.3 161 78.3
CiPaw.05G093800 Carya illinoinensis HOM05D005114 ORTHO05D006301 2.0e-62 242.7 159 69.2
Haze_01976 Corylus avellana HOM05D005114 ORTHO05D006301 2.5e-57 225.7 157 66.9
QL11p056532 Quercus lobata HOM05D005114 ORTHO05D006301 2.1e-56 222.6 162 65.4
Duzib248G1587 Durio zibethinus HOM05D005114 ORTHO05D006301 4.8e-56 221.5 163 65.6
Cfa005386 Carpinus fangiana HOM05D005114 ORTHO05D006301 6.2e-56 221.1 157 66.9
COL.COLO4_34318 Corchorus olitorius HOM05D005114 ORTHO05D006301 1.4e-55 219.9 162 64.2
Thecc.02G147000 Theobroma cacao HOM05D005114 ORTHO05D006301 4.5e-54 214.9 163 63.8
Gohir.A03G170500 Gossypium hirsutum HOM05D005114 ORTHO05D006301 2.2e-53 212.6 164 61.6
Gorai.005G216400 Gossypium raimondii HOM05D005114 ORTHO05D006301 3.8e-53 211.8 164 61.6
Aqoxy6G01552 Aquilegia oxysepala HOM05D005114 ORTHO05D006301 7.1e-52 207.6 155 63.2
GSVIVG01023865001 Vitis vinifera HOM05D007297 ORTHO05D009352 7.1e-52 207.6 133 75.2
Gohir.D02G193600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 1.2e-51 206.8 164 60.4
Duzib052G0751 Durio zibethinus HOM05D005114 ORTHO05D006301 3.0e-50 202.2 159 61.6
Manes.15G113200 Manihot esculenta HOM05D005114 ORTHO05D006301 2.5e-49 199.1 160 60.6
Cpa.g.sc232.10 Carica papaya HOM05D005114 ORTHO05D006301 9.6e-49 197.2 155 63.9
ClCG02G003320 Citrullus lanatus HOM05D005114 ORTHO05D006301 9.6e-49 197.2 152 62.5
Oeu061898.1 Olea europaea HOM05D005114 ORTHO05D006301 2.8e-48 195.7 138 65.9
Atru.chr5.3568 Acer truncatum HOM05D005114 ORTHO05D006301 1.1e-47 193.7 154 59.7
Sabra04G0139700 Salix brachista HOM05D005114 ORTHO05D006301 1.1e-47 193.7 158 60.8
Oeu025012.1 Olea europaea HOM05D005114 ORTHO05D006301 1.8e-47 193.0 148 65.5
SalBow5G2991 Salvia bowleyana HOM05D005114 ORTHO05D006301 2.4e-47 192.6 146 61.0
SalBow5G4655 Salvia bowleyana HOM05D005114 ORTHO05D006301 2.4e-47 192.6 146 61.0
Gohir.D12G013600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 4.0e-47 191.8 167 59.3
Ciclev10029408m.g Citrus clementina HOM05D005114 ORTHO05D006301 9.0e-47 190.7 159 57.9
CDE06G2378 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 1.2e-46 190.3 162 54.9
Gorai.008G013600 Gossypium raimondii HOM05D005114 ORTHO05D006301 4.5e-46 188.3 167 58.7
CDE07G1352 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 9.9e-46 187.2 164 56.7
Migut.N01364 Erythranthe guttata HOM05D005114 ORTHO05D006301 9.9e-46 187.2 148 64.2
Potri.004G207500 Populus trichocarpa HOM05D005114 ORTHO05D006301 2.9e-45 185.7 160 60.0
ClCG02G010460 Citrullus lanatus HOM05D005114 ORTHO05D006301 4.9e-45 184.9 154 61.0
Sed0004058 Sechium edule HOM05D005114 ORTHO05D006301 4.2e-44 181.8 153 58.8
Sed0025941 Sechium edule HOM05D005114 ORTHO05D006301 7.1e-44 181.0 152 58.6
CANSAT25G0809 Cannabis sativa HOM05D005114 ORTHO05D006301 1.2e-43 180.3 162 56.8
Nn6g31654 Nelumbo nucifera HOM05D005114 ORTHO05D006301 1.2e-43 180.3 146 64.4
CsaV3_6G010060 Cucumis sativus L. HOM05D005114 ORTHO05D006301 2.1e-43 179.5 161 58.4
Sabra09G0131100 Salix brachista HOM05D005114 ORTHO05D006301 2.7e-43 179.1 161 58.4
Nitab4.5_0000783g0020 Nicotiana tabacum HOM05D005114 ORTHO05D006301 3.5e-43 178.7 177 54.8
Potri.009G168800 Populus trichocarpa HOM05D005114 ORTHO05D006301 3.5e-43 178.7 162 57.4
MELO3C013487.2 Cucumis melo HOM05D005114 ORTHO05D006301 4.6e-43 178.3 161 57.8
MD11G1242200 Malus domestica HOM05D005114 ORTHO05D006301 4.6e-43 178.3 141 61.7
Eucgr.I01537 Eucalyptus grandis HOM05D005114 ORTHO05D006301 1.3e-42 176.8 162 56.8
Prupe.8G180900 Prunus persica HOM05D007297 ORTHO05D009352 1.8e-42 176.4 139 61.2
Rhsim05G0044800 Rhododendron simsii HOM05D005114 ORTHO05D006301 1.8e-42 176.4 167 53.9
RcHm_v2.0_Chr6g0281051 Rosa chinensis HOM05D005114 ORTHO05D006301 3.9e-42 175.3 161 55.9
MD05G1140900 Malus domestica HOM05D005114 ORTHO05D006301 5.1e-42 174.9 141 60.3
MSTRG.27609 Avicennia marina HOM05D005114 ORTHO05D006301 1.1e-41 173.7 141 61.0
Duzib132G0223 Durio zibethinus HOM05D005114 ORTHO05D006301 2.5e-41 172.6 129 65.9
Lsat_1_v5_gn_4_127800 Lactuca sativa HOM05D005114 ORTHO05D006301 5.6e-41 171.4 147 57.8
Lsat_1_v5_gn_8_120760 Lactuca sativa HOM05D005114 ORTHO05D006301 1.1e-39 167.2 145 55.9
PGR142G2291 Punica granatum HOM05D005114 ORTHO05D006301 1.1e-39 167.2 150 54.7
FvH4_2g16910 Fragaria vesca HOM05D005114 ORTHO05D006301 2.4e-39 166.0 156 55.8
FAN24G2001 Fragaria x ananassa HOM05D008916 ORTHO05D029537 2.4e-39 166.0 156 55.8
Dinv41866 Davidia involucrata HOM05D005114 ORTHO05D006301 4.0e-39 165.2 167 58.7
MELO3C015705.2 Cucumis melo HOM05D005114 ORTHO05D006301 3.4e-38 162.2 159 55.3
FAN27G0013 Fragaria x ananassa HOM05D005114 ORTHO05D006301 4.5e-38 161.8 140 57.9
Solyc01g112260.4 Solanum lycopersicum HOM05D005114 ORTHO05D006301 5.8e-38 161.4 171 51.5
Sopen01g054350 Solanum pennellii HOM05D005114 ORTHO05D006301 7.6e-38 161.0 171 51.5
PSO210G3276 Papaver somniferum HOM05D005114 ORTHO05D006301 1.0e-37 160.6 156 55.8
PSO761G0527 Papaver somniferum HOM05D005114 ORTHO05D006301 1.0e-37 160.6 156 55.8
EL10Ac9g21545 Beta vulgaris HOM05D005114 ORTHO05D006301 2.2e-37 159.5 157 51.6
Ah.01g009940 Amaranthus hybridus HOM05D005114 ORTHO05D006301 4.9e-37 158.3 160 49.4
FAN15G0896 Fragaria x ananassa HOM05D005114 ORTHO05D006301 4.9e-37 158.3 156 54.5
Eucgr.H04995 Eucalyptus grandis HOM05D005114 ORTHO05D006301 1.1e-36 157.1 162 54.9
CSS0034975 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 6.0e-35 151.4 150 54.7
Ah.01g017650 Amaranthus hybridus HOM05D005114 ORTHO05D006301 7.9e-35 151.0 159 47.2
Lj5P171T50 Lonicera japonica HOM05D005114 ORTHO05D006301 7.9e-35 151.0 91 69.2
TWI31G1388 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 1.8e-34 149.8 157 54.8
CiPaw.06G114800 Carya illinoinensis HOM05D005114 ORTHO05D006301 2.3e-34 149.4 98 70.4
Phvul.008G292700 Phaseolus vulgaris HOM05D005114 ORTHO05D006301 2.3e-34 149.4 139 56.1
MBI04_g33967_MAGBIO Magnolia biondii HOM05D005114 ORTHO05D006301 5.1e-34 148.3 136 55.1
Lsat_1_v5_gn_3_48420 Lactuca sativa HOM05D005114 ORTHO05D006301 1.3e-32 143.7 152 48.7
SGA_v2.0_scaffold98G29308 Striga asiatica HOM05D005114 ORTHO05D006301 1.6e-32 143.3 151 53.0
Glyma.02G311900 Glycine max HOM05D005114 ORTHO05D006301 2.2e-32 142.9 139 54.0
VMungo0647G0598 Vigna mungo HOM05D005114 ORTHO05D006301 6.3e-32 141.4 141 54.6
PGR042G3856 Punica granatum HOM05D005114 ORTHO05D006301 1.4e-31 140.2 152 49.3
Os02g0715300 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 4.1e-31 138.7 153 45.8
unitig_0.g2368 Utricularia gibba HOM05D005114 ORTHO05D006301 4.1e-31 138.7 140 54.3
CsaV3_7G002020 Cucumis sativus L. HOM05D005114 ORTHO05D006301 5.3e-31 138.3 140 53.6
PSO675G3082 Papaver somniferum HOM05D005114 ORTHO05D006301 5.3e-31 138.3 151 52.3
HanXRQChr15g0479801 Helianthus annuus HOM05D005114 ORTHO05D006301 9.0e-31 137.5 127 53.5
LjContig00081g0003123 Lotus japonicus HOM05D005114 ORTHO05D006301 4.5e-30 135.2 135 54.1
PSO541G2758 Papaver somniferum HOM05D005114 ORTHO05D006301 4.5e-30 135.2 152 50.7
Zm00001eb252690 Zea mays HOM05D005114 ORTHO05D006301 2.2e-29 132.9 159 45.9
TWI75G1159 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 3.8e-29 132.1 150 54.7
Os08g0511400 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 1.1e-28 130.6 145 44.8
HanXRQChr14g0449881 Helianthus annuus HOM05D005114 ORTHO05D006301 1.4e-28 130.2 148 50.0
HanXRQChr16g0528291 Helianthus annuus HOM05D005114 ORTHO05D006301 3.2e-28 129.0 127 51.2
CSS0049408 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 1.2e-27 127.1 165 47.9
THA.LOC104819696 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 1.6e-27 126.7 144 50.7
Carub.0007s0497 Capsella rubella HOM05D005114 ORTHO05D006301 2.7e-27 125.9 146 47.3
Sp7g33120 Schrenkiella parvula HOM05D005114 ORTHO05D006301 2.7e-27 125.9 145 49.0
DCAR_006992 Daucus carota HOM05D005114 ORTHO05D006301 3.6e-27 125.6 160 46.9
Cc09_g10870 Coffea canephora HOM05D007297 ORTHO05D009352 6.1e-27 124.8 87 67.8
AL7G15830 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 7.9e-27 124.4 147 47.6
AT4G35320 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 1.3e-26 123.6 147 47.6
BraA01t00308Z Brassica rapa HOM05D005114 ORTHO05D006301 1.3e-26 123.6 141 49.6
CARHR243650 Cardamine hirsuta HOM05D005114 ORTHO05D006301 1.3e-26 123.6 135 47.4
Thhalv10026488m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 1.8e-26 123.2 134 47.8
BcaNung00605 Brassica carinata HOM05D005114 ORTHO05D006301 2.3e-26 122.9 142 47.9
C01p03580 Brassica napus HOM05D005114 ORTHO05D006301 2.3e-26 122.9 142 47.9
BolC1t00348H Brassica oleracea HOM05D005114 ORTHO05D006301 3.9e-26 122.1 141 48.2
ATR0605G119 Amborella trichopoda HOM05D005114 ORTHO05D006301 5.1e-26 121.7 151 47.7
A01p03230 Brassica napus HOM05D005114 ORTHO05D006301 5.1e-26 121.7 141 48.9
THA.LOC104807409 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 1.1e-25 120.6 151 47.0
Aa31LG2G14950 Aethionema arabicum HOM05D005114 ORTHO05D006301 1.5e-25 120.2 150 44.0
HPP92_018957 Vanilla planifolia HOM05D005114 ORTHO05D006301 5.7e-25 118.2 159 43.4
Sc08g0002110 Simmondsia chinensis HOM05D005114 ORTHO05D006301 7.4e-25 117.9 146 45.2
unitig_26.g9983 Utricularia gibba HOM05D005114 ORTHO05D006301 7.4e-25 117.9 126 49.2
HPP92_019672 Vanilla planifolia HOM05D005114 ORTHO05D006301 6.3e-24 114.8 164 40.2
unitig_749.g13979 Utricularia gibba HOM05D005114 ORTHO05D006301 8.2e-24 114.4 114 50.9
CAN.G1645.5 Capsicum annuum HOM05D005114 ORTHO05D006301 1.8e-23 113.2 112 53.6
AUR62013183 Chenopodium quinoa HOM05D005114 ORTHO05D006301 2.4e-23 112.8 84 56.0
Glyma.14G000700 Glycine max HOM05D005114 ORTHO05D006301 3.1e-23 112.5 124 51.6
Zm00001eb188970 Zea mays HOM05D005114 ORTHO05D006301 6.1e-19 98.2 145 42.1
Lalb_Chr10g0107691 Lupinus albus HOM05D005114 ORTHO05D006301 1.5e-17 93.6 126 46.0
Medtr5g099250 Medicago truncatula HOM05D005114 ORTHO05D006301 2.0e-17 93.2 119 44.5
AT2G17300 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 9.7e-17 90.9 124 43.5
Carub.0003s3126 Capsella rubella HOM05D005114 ORTHO05D006301 9.7e-17 90.9 133 40.6
TPR.G18628 Trifolium pratense HOM05D005114 ORTHO05D006301 9.7e-17 90.9 96 52.1
SEGI_06952 Sequoiadendron giganteum HOM05D005114 ORTHO05D006301 4.8e-16 88.6 142 36.6
HPP92_017809 Vanilla planifolia HOM05D005114 ORTHO05D006301 1.4e-15 87.0 143 41.3
Thhalv10023149m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 2.4e-15 86.3 129 41.1
Zm00001eb035190 Zea mays HOM05D005114 ORTHO05D006301 2.4e-15 86.3 154 36.4
Ca_06504_v3 Cicer arietinum L. HOM05D005114 ORTHO05D006301 3.1e-15 85.9 147 39.5
AL3G50180 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 2.0e-14 83.2 124 42.7
BraA07t28162Z Brassica rapa HOM05D005114 ORTHO05D006301 4.5e-14 82.0 115 42.6
Gohir.A12G012850 Gossypium hirsutum HOM05D005114 ORTHO05D006301 7.7e-14 81.3 48 72.9
Lju1609C0T0 Lonicera japonica HOM05D005114 ORTHO05D006301 1.3e-13 80.5 53 60.4
A07p03740 Brassica napus HOM05D005114 ORTHO05D006301 1.7e-13 80.1 115 41.7
BcaC06g36254 Brassica carinata HOM05D005114 ORTHO05D006301 5.0e-13 78.6 115 40.9
C07p05980 Brassica napus HOM05D005114 ORTHO05D006301 5.0e-13 78.6 115 40.9
BolC7t41007H Brassica oleracea HOM05D005114 ORTHO05D006301 5.0e-13 78.6 115 40.9
BcaB03g16485 Brassica carinata HOM05D005114 ORTHO05D006301 1.1e-12 77.4 113 39.8
Dinv11287 Davidia involucrata HOM05D005114 ORTHO05D006301 1.4e-12 77.0 60 65.0
Dinv13785 Davidia involucrata HOM05D005114 ORTHO05D006301 1.4e-12 77.0 60 63.3
RcHm_v2.0_Chr4g0418711 Rosa chinensis HOM05D005114 ORTHO05D006301 2.5e-12 76.3 83 50.6
CARHR107410 Cardamine hirsuta HOM05D005114 ORTHO05D006301 5.5e-12 75.1 123 42.3
Sp3g30650 Schrenkiella parvula HOM05D005114 ORTHO05D006301 6.7e-10 68.2 131 33.6
Zm00001eb199930 Zea mays HOM05D005114 ORTHO05D006301 2.0e-09 66.6 151 29.8
SEGI_39678 Sequoiadendron giganteum HOM05D005114 ORTHO05D006301 1.7e-08 63.5 84 39.3


User provided reference genes

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