Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G0671 Trochodendron aralioides HOM05D003511 ORTHO05D004403 2.5e-132 475.3 221 100.0
Thecc.02G110900 Theobroma cacao HOM05D003511 ORTHO05D004403 2.3e-117 425.6 219 86.8
Cfa004603 Carpinus fangiana HOM05D003511 ORTHO05D004403 2.1e-115 419.1 217 87.1
Dinv42203 Davidia involucrata HOM05D003511 ORTHO05D004403 3.1e-114 415.2 214 86.4
Duzib132G0449 Durio zibethinus HOM05D003511 ORTHO05D004403 4.0e-114 414.8 219 85.8
Duzib052G0193 Durio zibethinus HOM05D003511 ORTHO05D004403 6.9e-114 414.1 219 84.9
QL11p032729 Quercus lobata HOM05D003511 ORTHO05D004403 9.9e-113 410.2 214 86.0
Haze_10199 Corylus avellana HOM05D003511 ORTHO05D004403 4.9e-112 407.9 209 87.6
Gorai.008G022200 Gossypium raimondii HOM05D003511 ORTHO05D004403 4.9e-112 407.9 219 83.1
CiPaw.05G013100 Carya illinoinensis HOM05D003511 ORTHO05D004403 8.4e-112 407.1 214 85.5
CANSAT25G1711 Cannabis sativa HOM05D003511 ORTHO05D004403 2.4e-111 405.6 212 84.0
FAN27G0709 Fragaria x ananassa HOM05D003511 ORTHO05D004403 2.4e-111 405.6 214 84.6
FAN15G2851 Fragaria x ananassa HOM05D003511 ORTHO05D004403 4.2e-111 404.8 214 84.6
GSVIVG01037900001 Vitis vinifera HOM05D003511 ORTHO05D004403 5.4e-111 404.4 214 82.7
Sabra09G0072200 Salix brachista HOM05D003511 ORTHO05D004403 7.1e-111 404.1 217 81.1
RcHm_v2.0_Chr6g0254541 Rosa chinensis HOM05D003511 ORTHO05D004403 9.3e-111 403.7 214 84.1
Manes.10G075800 Manihot esculenta HOM05D003511 ORTHO05D004403 1.2e-110 403.3 218 81.7
Hma1.2p1_1518F.1_g288460 Hydrangea macrophylla HOM05D003511 ORTHO05D004403 1.6e-110 402.9 214 83.2
FAN20G1862 Fragaria x ananassa HOM05D003511 ORTHO05D004403 2.1e-110 402.5 214 83.6
Gohir.D12G021900 Gossypium hirsutum HOM05D003511 ORTHO05D004403 2.1e-110 402.5 214 83.6
Lj5C215T12 Lonicera japonica HOM05D003511 ORTHO05D004403 7.9e-110 400.6 214 83.2
Gohir.A12G021400 Gossypium hirsutum HOM05D003511 ORTHO05D004403 1.0e-109 400.2 214 83.2
FvH4_2g04810 Fragaria vesca HOM05D003511 ORTHO05D004403 1.3e-109 399.8 214 83.2
Potri.009G093900 Populus trichocarpa HOM05D003511 ORTHO05D004403 1.3e-109 399.8 217 80.2
TWI79G1106 Tripterygium wilfordii HOM05D003511 ORTHO05D004403 1.3e-109 399.8 214 83.2
FAN24G0829 Fragaria x ananassa HOM05D003511 ORTHO05D004403 3.9e-109 398.3 214 82.7
Prupe.8G137300 Prunus persica HOM05D003511 ORTHO05D004403 1.5e-108 396.4 214 82.2
MD10G1099200 Malus domestica HOM05D003511 ORTHO05D004403 1.9e-108 396.0 211 83.4
Nn5g30453 Nelumbo nucifera HOM05D003511 ORTHO05D004403 2.5e-108 395.6 217 82.0
Hma1.2p1_1518F.1_g288470 Hydrangea macrophylla HOM05D003511 ORTHO05D004403 3.3e-108 395.2 214 81.3
TPR.G19062 Trifolium pratense HOM05D003511 ORTHO05D004403 4.3e-108 394.8 216 80.1
FAN15G0970 Fragaria x ananassa HOM05D003511 ORTHO05D004403 7.4e-108 394.0 214 81.8
CSS0033371 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 9.6e-108 393.7 221 82.4
Cpa.g.sc106.113 Carica papaya HOM05D003511 ORTHO05D004403 9.6e-108 393.7 214 83.2
FvH4_2g04870 Fragaria vesca HOM05D003511 ORTHO05D004403 1.3e-107 393.3 214 81.8
FAN24G2294 Fragaria x ananassa HOM05D003511 ORTHO05D004403 2.8e-107 392.1 215 81.9
Actinidia34394 Actinidia chinensis HOM05D003511 ORTHO05D004403 3.6e-107 391.7 215 81.9
vmacro01992 Vaccinium macrocarpon HOM05D003511 ORTHO05D004403 3.6e-107 391.7 215 82.3
Aqoxy6G02835 Aquilegia oxysepala HOM05D003511 ORTHO05D004403 6.2e-107 391.0 219 79.9
Ciclev10027816m.g Citrus clementina HOM05D003511 ORTHO05D004403 1.1e-106 390.2 214 80.8
Eucgr.I01093 Eucalyptus grandis HOM05D003511 ORTHO05D004403 1.1e-106 390.2 214 79.9
CiPaw.05G013200 Carya illinoinensis HOM05D003511 ORTHO05D004403 1.4e-106 389.8 214 82.7
Rhsim11G0156500 Rhododendron simsii HOM05D003511 ORTHO05D004403 1.4e-106 389.8 214 82.7
Lj5A215G58 Lonicera japonica HOM05D003511 ORTHO05D004403 1.8e-106 389.4 219 80.4
Rhsim11G0158000 Rhododendron simsii HOM05D003511 ORTHO05D004403 1.8e-106 389.4 214 82.2
Lj5g0008514 Lotus japonicus HOM05D003511 ORTHO05D004403 2.4e-106 389.0 214 79.4
Cfa004604 Carpinus fangiana HOM05D003511 ORTHO05D004403 5.3e-106 387.9 214 82.2
Potri.001G299000 Populus trichocarpa HOM05D003511 ORTHO05D004403 5.3e-106 387.9 218 79.8
DCAR_001655 Daucus carota HOM05D003511 ORTHO05D004403 1.2e-105 386.7 210 82.9
TWI75G1477 Tripterygium wilfordii HOM05D003511 ORTHO05D004403 2.0e-105 386.0 219 79.0
Manes.10G075700 Manihot esculenta HOM05D003511 ORTHO05D004403 9.9e-105 383.6 214 79.9
Medtr1g107135 Medicago truncatula HOM05D003511 ORTHO05D004403 1.7e-104 382.9 216 77.3
Ca_11061_v3 Cicer arietinum L. HOM05D003511 ORTHO05D004403 3.8e-104 381.7 216 77.3
Nitab4.5_0001480g0130 Nicotiana tabacum HOM05D003511 ORTHO05D004403 3.8e-104 381.7 214 79.0
Oeu029532.2 Olea europaea HOM05D003511 ORTHO05D004403 6.4e-104 380.9 214 79.0
arahy.Tifrunner.gnm1.ann1.VN0KJM Arachis hypogaea HOM05D003511 ORTHO05D004403 1.1e-103 380.2 214 78.0
Glyma.10G260900 Glycine max HOM05D003511 ORTHO05D004403 1.4e-103 379.8 216 78.2
Glyma.20G130366 Glycine max HOM05D003511 ORTHO05D004403 1.9e-103 379.4 216 78.7
Nitab4.5_0003699g0020 Nicotiana tabacum HOM05D003511 ORTHO05D004403 2.4e-103 379.0 214 78.0
MBI16_g09476_MAGBIO Magnolia biondii HOM05D003511 ORTHO05D004403 3.2e-103 378.6 211 80.6
PSO541G1166 Papaver somniferum HOM05D003511 ORTHO05D004403 3.2e-103 378.6 214 79.0
Atru.chr5.2454 Acer truncatum HOM05D003511 ORTHO05D004403 4.2e-103 378.3 203 83.3
HanXRQChr09g0251071 Helianthus annuus HOM05D003511 ORTHO05D004403 9.3e-103 377.1 223 75.8
COL.COLO4_32574 Corchorus olitorius HOM05D003511 ORTHO05D004403 1.2e-102 376.7 214 78.5
Phvul.007G041400 Phaseolus vulgaris HOM05D003511 ORTHO05D004403 2.1e-102 375.9 214 78.0
Migut.B00398 Erythranthe guttata HOM05D003511 ORTHO05D004403 2.7e-102 375.6 216 76.4
TPR.G19061 Trifolium pratense HOM05D003511 ORTHO05D004403 3.5e-102 375.2 217 77.0
Oeu013759.1 Olea europaea HOM05D003511 ORTHO05D004403 4.6e-102 374.8 214 78.5
Rhsim10G0162400 Rhododendron simsii HOM05D003511 ORTHO05D004403 7.9e-102 374.0 219 77.6
Potri.009G093500 Populus trichocarpa HOM05D003511 ORTHO05D004403 1.0e-101 373.6 215 77.7
PGR142G1515 Punica granatum HOM05D003511 ORTHO05D004403 1.8e-101 372.9 216 75.9
MSTRG.20193 Avicennia marina HOM05D003511 ORTHO05D004403 3.9e-101 371.7 214 79.0
Lsat_1_v5_gn_9_111920 Lactuca sativa HOM05D003511 ORTHO05D004403 3.9e-101 371.7 223 74.9
Glyma.20G130432 Glycine max HOM05D003511 ORTHO05D004403 6.7e-101 370.9 216 76.4
Thecc.02G111000 Theobroma cacao HOM05D003511 ORTHO05D004403 1.5e-100 369.8 216 77.3
ECA240G1815 Erigeron canadensis HOM05D003511 ORTHO05D004403 2.5e-100 369.0 223 74.9
Lj5C215G13 Lonicera japonica HOM05D003511 ORTHO05D004403 3.3e-100 368.6 218 75.7
Lalb_Chr06g0165351 Lupinus albus HOM05D003511 ORTHO05D004403 4.3e-100 368.2 216 74.5
AUR62010329 Chenopodium quinoa HOM05D003511 ORTHO05D004403 5.6e-100 367.9 215 74.9
QL11p032687 Quercus lobata HOM05D003511 ORTHO05D004403 1.3e-99 366.7 214 78.0
AUR62039057 Chenopodium quinoa HOM05D003511 ORTHO05D004403 2.1e-99 365.9 215 74.9
CsaV3_3G018140 Cucumis sativus L. HOM05D003511 ORTHO05D004403 2.1e-99 365.9 214 76.6
EL10Ac9g22257 Beta vulgaris HOM05D003511 ORTHO05D004403 1.1e-98 363.6 215 74.9
Cc02_g19400 Coffea canephora HOM05D003511 ORTHO05D004403 1.1e-98 363.6 214 74.8
Ciclev10027838m.g Citrus clementina HOM05D003511 ORTHO05D004403 1.4e-98 363.2 216 75.9
Manes.07G068400 Manihot esculenta HOM05D003511 ORTHO05D004403 1.4e-98 363.2 214 75.7
Atru.chr5.2453 Acer truncatum HOM05D003511 ORTHO05D004403 9.0e-98 360.5 211 77.7
Peaxi162Scf00152g00326 Petunia axillaris HOM05D003511 ORTHO05D004403 2.6e-97 359.0 212 75.0
Hund00157 Selenicereus undatus HOM05D003511 ORTHO05D004403 3.4e-97 358.6 215 73.0
ClCG05G010350 Citrullus lanatus HOM05D003511 ORTHO05D004403 4.5e-97 358.2 214 74.8
Gorai.008G022000 Gossypium raimondii HOM05D003511 ORTHO05D004403 5.8e-97 357.8 217 74.2
SalBow6G6056 Salvia bowleyana HOM05D003511 ORTHO05D004403 5.8e-97 357.8 216 72.2
Gohir.D12G021700 Gossypium hirsutum HOM05D003511 ORTHO05D004403 1.3e-96 356.7 217 74.2
Aa31LG2G16810 Aethionema arabicum HOM05D003511 ORTHO05D004403 2.2e-96 355.9 214 75.2
AUR62010328 Chenopodium quinoa HOM05D003511 ORTHO05D004403 2.2e-96 355.9 209 74.2
ATR0661G369 Amborella trichopoda HOM05D003511 ORTHO05D004403 2.9e-96 355.5 217 73.7
AUR62039058 Chenopodium quinoa HOM05D003511 ORTHO05D004403 3.8e-96 355.1 209 74.2
Sabra09G0072100 Salix brachista HOM05D003511 ORTHO05D004403 3.8e-96 355.1 212 73.6
ATR0205G005 Amborella trichopoda HOM05D003511 ORTHO05D004403 4.9e-96 354.8 217 74.7
Hund06308 Selenicereus undatus HOM05D003511 ORTHO05D004403 2.5e-95 352.4 214 72.4
Rhsim10G0162100 Rhododendron simsii HOM05D003511 ORTHO05D004403 3.2e-95 352.1 219 74.9
Eucgr.I01091 Eucalyptus grandis HOM05D003511 ORTHO05D004403 1.6e-94 349.7 214 72.4
DCAR_001656 Daucus carota HOM05D003511 ORTHO05D004403 2.1e-94 349.4 216 73.6
Eucgr.I01092 Eucalyptus grandis HOM05D003511 ORTHO05D004403 2.1e-94 349.4 214 75.2
Gohir.A12G021350 Gossypium hirsutum HOM05D003511 ORTHO05D004403 2.7e-94 349.0 217 72.8
Sc08g0001330 Simmondsia chinensis HOM05D003511 ORTHO05D004403 6.0e-94 347.8 214 72.9
Peaxi162Scf00016g02427 Petunia axillaris HOM05D003511 ORTHO05D004403 3.9e-93 345.1 214 73.8
HPP92_006064 Vanilla planifolia HOM05D003511 ORTHO05D004403 8.7e-93 344.0 210 71.9
Sabra16G0187500 Salix brachista HOM05D003511 ORTHO05D004403 1.5e-92 343.2 222 69.8
Duzib248G0534 Durio zibethinus HOM05D003511 ORTHO05D004403 1.9e-92 342.8 185 82.2
Atru.chr5.2456 Acer truncatum HOM05D003511 ORTHO05D004403 3.3e-92 342.0 190 82.1
Sed0017826 Sechium edule HOM05D003511 ORTHO05D004403 3.3e-92 342.0 214 71.5
Thhalv10024398m.g Eutrema salsugineum HOM05D003511 ORTHO05D004403 3.7e-91 338.6 214 71.5
Os10g0339600 Oryza sativa ssp. japonica HOM05D003511 ORTHO05D004403 4.8e-91 338.2 215 70.2
HanXRQChr10g0296941 Helianthus annuus HOM05D003511 ORTHO05D004403 1.4e-90 336.7 217 69.6
THA.LOC104819550 Tarenaya hassleriana HOM05D003511 ORTHO05D004403 1.8e-90 336.3 214 69.6
AL7G17030 Arabidopsis lyrata HOM05D003511 ORTHO05D004403 2.4e-90 335.9 214 70.6
Carub.0007s0611 Capsella rubella HOM05D003511 ORTHO05D004403 2.4e-90 335.9 214 70.1
VMungo0720G0159 Vigna mungo HOM05D003511 ORTHO05D004403 4.1e-90 335.1 187 78.6
Lsat_1_v5_gn_5_116360 Lactuca sativa HOM05D003511 ORTHO05D004403 5.3e-90 334.7 220 67.3
Sp7g32040 Schrenkiella parvula HOM05D003511 ORTHO05D004403 6.9e-90 334.3 214 70.1
AT4G34260 Arabidopsis thaliana HOM05D003511 ORTHO05D004403 9.0e-90 334.0 213 70.9
SEGI_38974 Sequoiadendron giganteum HOM05D003511 ORTHO05D004403 1.2e-89 333.6 215 68.8
BcaNung04164 Brassica carinata HOM05D003511 ORTHO05D004403 3.4e-89 332.0 214 69.2
Glyma.01G243600 Glycine max HOM05D003511 ORTHO05D004403 1.0e-88 330.5 219 68.5
arahy.Tifrunner.gnm1.ann1.LFSR1E Arachis hypogaea HOM05D003511 ORTHO05D004403 1.3e-88 330.1 208 73.6
DCAR_029092 Daucus carota HOM05D003511 ORTHO05D004403 1.7e-88 329.7 211 70.6
COL.COLO4_32573 Corchorus olitorius HOM05D003511 ORTHO05D004403 2.9e-88 328.9 172 86.6
BraA01t00406Z Brassica rapa HOM05D003511 ORTHO05D004403 3.8e-88 328.6 214 69.2
CARHR242530 Cardamine hirsuta HOM05D003511 ORTHO05D004403 5.0e-88 328.2 214 69.6
A01p04170 Brassica napus HOM05D003511 ORTHO05D004403 8.4e-88 327.4 214 68.7
PGR142G0041 Punica granatum HOM05D003511 ORTHO05D004403 8.4e-88 327.4 214 69.2
C01p04540 Brassica napus HOM05D003511 ORTHO05D004403 1.1e-87 327.0 214 69.2
BolC1t00439H Brassica oleracea HOM05D003511 ORTHO05D004403 1.1e-87 327.0 214 69.2
Phvul.002G053000 Phaseolus vulgaris HOM05D003511 ORTHO05D004403 1.4e-87 326.6 221 66.5
BcaNung04986 Brassica carinata HOM05D003511 ORTHO05D004403 1.9e-87 326.2 214 69.2
VMungo1215G0806 Vigna mungo HOM05D003511 ORTHO05D004403 6.1e-86 321.2 221 66.1
Os10g0339290 Oryza sativa ssp. japonica HOM05D003511 ORTHO05D004403 4.3e-84 315.1 214 67.3
CDE06G2550 Ceratophyllum demersum HOM05D003511 ORTHO05D004403 7.7e-81 304.3 213 65.3
ECA234G0109 Erigeron canadensis HOM05D003511 ORTHO05D004403 9.1e-74 280.8 158 78.5
Atru.chr5.2448 Acer truncatum HOM05D003511 ORTHO05D004403 1.6e-70 270.0 172 73.3
Mapoly0115s0027 Marchantia polymorpha HOM05D003511 ORTHO05D004403 2.2e-64 249.6 211 55.5
Pp3c19_10350 Physcomitrium patens HOM05D003511 ORTHO05D004403 1.5e-63 246.9 219 53.9
MD10G1099600 Malus domestica HOM05D003511 ORTHO05D022111 2.1e-62 243.0 136 81.6
SMO116G0225 Selaginella moellendorffii HOM05D003511 ORTHO05D004403 4.8e-59 231.9 189 55.0
CSS0003612 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 1.0e-56 224.2 121 84.3
CSS0042293 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 1.0e-56 224.2 121 84.3
Sabra16G0187700 Salix brachista HOM05D003511 ORTHO05D004403 1.9e-55 219.9 123 79.7
CSS0035504 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 3.6e-54 215.7 121 82.6
vmacro02524 Vaccinium macrocarpon HOM05D003511 ORTHO05D004403 3.0e-53 212.6 114 82.5
Potri.001G298900 Populus trichocarpa HOM05D003511 ORTHO05D004403 2.7e-49 199.5 115 75.7
SEGI_24031 Sequoiadendron giganteum HOM05D003511 ORTHO05D004403 6.3e-43 178.3 101 76.2
Medtr4g127370 Medicago truncatula HOM05D003511 ORTHO05D004403 4.5e-41 172.2 100 73.0
CSS0020018 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D022111 1.9e-39 166.8 100 76.0
CSS0007308 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D022111 7.3e-39 164.9 100 75.0
CSS0026771 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D022111 9.5e-39 164.5 100 76.0
vmacro02525 Vaccinium macrocarpon HOM05D003511 ORTHO05D022111 2.8e-38 162.9 106 68.9
AagrBONN_evm.TU.Sc2ySwM_344.4246 Anthoceros agrestis HOM05D003511 ORTHO05D004403 6.8e-37 158.3 171 48.0
FAN24G3426 Fragaria x ananassa HOM05D003511 ORTHO05D022111 1.6e-25 120.6 116 56.9
Lsat_1_v5_gn_5_116340 Lactuca sativa HOM05D003511 ORTHO05D004403 1.7e-24 117.1 107 48.6
Dinv15773 Davidia involucrata HOM05D003511 ORTHO05D004403 1.8e-21 107.1 49 91.8
TAR365G0577 Trochodendron aralioides HOM05D003511 ORTHO05D416054 4.4e-20 102.4 54 83.3
MD10G1099400 Malus domestica HOM05D003511 ORTHO05D004403 4.9e-19 99.0 49 83.7
Psat6g217200 Pisum sativum HOM05D003511 ORTHO05D004403 5.4e-18 95.5 49 77.6
Zm00001eb027590 Zea mays HOM05D003511 ORTHO05D004403 9.2e-18 94.7 49 71.4
Glyma.10G260750 Glycine max HOM05D003511 ORTHO05D004403 1.2e-09 67.8 100 38.0
Lj5g0016794 Lotus japonicus HOM05D003511 ORTHO05D236221 2.5e-07 60.1 39 64.1
Rhsim02G0025200 Rhododendron simsii HOM05D004138 ORTHO05D004898 5.6e-07 58.9 46 65.2


User provided reference genes

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